Wall clock time and date at job start Sun Mar 29 2020 23:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.69592 * 2 1 4 4 C 1.53337 * 109.67385 * 239.48312 * 2 1 3 5 5 C 1.52916 * 108.67361 * 172.73485 * 4 2 1 6 6 N 1.45755 * 110.49186 * 50.75078 * 5 4 2 7 7 C 1.33356 * 124.10311 * 341.21270 * 6 5 4 8 8 O 1.21278 * 118.24707 * 181.94166 * 7 6 5 9 9 C 1.50165 * 123.51899 * 1.65368 * 7 6 5 10 10 H 1.08999 * 109.54019 * 222.65674 * 9 7 6 11 11 N 1.46501 * 109.12452 * 102.90655 * 9 7 6 12 12 C 1.34783 * 119.99788 * 84.66984 * 11 9 7 13 13 O 1.21279 * 120.00081 * 359.97438 * 12 11 9 14 14 C 1.50696 * 119.99719 * 179.97438 * 12 11 9 15 15 C 1.52999 * 109.47294 * 179.97438 * 14 12 11 16 16 C 1.50699 * 109.47658 * 179.97438 * 15 14 12 17 17 H 1.07999 * 119.99568 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00251 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99769 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99920 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47448 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47074 * 120.00256 * 20 18 16 23 23 H 1.48504 * 109.46988 * 239.99816 * 20 18 16 24 24 H 1.09003 * 109.46619 * 180.52038 * 1 2 3 25 25 H 1.09001 * 109.46718 * 300.51532 * 1 2 3 26 26 H 1.08992 * 109.47071 * 60.51809 * 1 2 3 27 27 H 1.09006 * 109.60302 * 52.97850 * 4 2 1 28 28 H 1.09000 * 109.60365 * 292.49216 * 4 2 1 29 29 H 1.09000 * 109.30245 * 290.43987 * 5 4 2 30 30 H 1.09009 * 109.30096 * 171.06590 * 5 4 2 31 31 H 0.97001 * 117.94686 * 160.92028 * 6 5 4 32 32 H 0.96998 * 120.00233 * 264.65919 * 11 9 7 33 33 H 1.09006 * 109.47168 * 299.99619 * 14 12 11 34 34 H 1.09001 * 109.47341 * 59.99600 * 14 12 11 35 35 H 1.09006 * 109.46765 * 299.99943 * 15 14 12 36 36 H 1.09001 * 109.47190 * 59.99585 * 15 14 12 37 37 H 0.97001 * 119.99795 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0463 -0.7332 -1.2439 5 6 3.5643 -0.5638 -1.3173 6 7 4.1795 -0.9196 -0.0447 7 6 3.5199 -0.9844 1.1125 8 8 4.1454 -1.2571 2.1151 9 6 2.0454 -0.7318 1.2417 10 1 1.8559 -0.1228 2.1257 11 7 1.3487 -2.0136 1.3753 12 6 1.2346 -2.5956 2.5856 13 8 1.7090 -2.0584 3.5640 14 6 0.5174 -3.9139 2.7231 15 6 0.5305 -4.3511 4.1892 16 6 -0.1872 -5.6691 4.3269 17 1 -0.6107 -6.1468 3.4558 18 6 -0.3031 -6.2649 5.5648 19 7 0.2122 -5.6829 6.6256 20 14 -1.1921 -7.8990 5.7352 21 1 -1.6770 -8.3401 4.4028 22 1 -0.2589 -8.9153 6.2844 23 1 -2.3477 -7.7403 6.6543 24 1 -0.3633 -1.0277 0.0093 25 1 -0.3633 0.5218 0.8854 26 1 -0.3633 0.5057 -0.8945 27 1 1.5872 -0.3074 -2.1362 28 1 1.7995 -1.7925 -1.1727 29 1 3.8000 0.4738 -1.5537 30 1 3.9612 -1.2080 -2.1020 31 1 5.1273 -1.1262 -0.0400 32 1 0.9694 -2.4434 0.5928 33 1 -0.5132 -3.8038 2.3857 34 1 1.0203 -4.6662 2.1154 35 1 1.5613 -4.4614 4.5263 36 1 0.0279 -3.5989 4.7972 37 1 0.1304 -6.1019 7.4966 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291532510.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:11:11 Heat of formation + Delta-G solvation = -120.757042 kcal Electronic energy + Delta-G solvation = -19141.934598 eV Core-core repulsion = 16110.106209 eV Total energy + Delta-G solvation = -3031.828390 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.95338 -40.14264 -38.09072 -36.01730 -35.54476 -33.74360 -32.86476 -30.22120 -28.81251 -27.39218 -24.63752 -23.71041 -22.46306 -21.46495 -19.98838 -18.92428 -18.25321 -17.61602 -17.52058 -17.13031 -16.47756 -16.22093 -16.01879 -15.39604 -14.90295 -14.77434 -14.27194 -14.14865 -14.10675 -13.77479 -13.33894 -13.24302 -12.84816 -12.76450 -12.44357 -12.20408 -11.94502 -11.83244 -11.66868 -11.61252 -11.29219 -11.28905 -10.75972 -10.58721 -10.07766 -10.03596 -8.18074 -6.33065 1.30606 1.41926 1.44130 1.57403 1.69650 2.24617 2.39313 2.49481 3.14895 3.46151 3.61011 3.74124 3.86595 4.03608 4.41597 4.45074 4.51635 4.52332 4.55559 4.58488 4.86673 4.98858 5.02298 5.05491 5.13402 5.29029 5.36365 5.45056 5.49449 5.60767 5.83217 5.84523 6.16130 6.26003 6.53030 6.85852 7.17792 7.33524 7.37736 8.95239 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.035744 B = 0.004441 C = 0.004261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.156286 B = 6303.314023 C = 6569.948042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 H 0.105 0.895 4 C -0.132 4.132 5 C 0.101 3.899 6 N -0.708 5.708 7 C 0.496 3.504 8 O -0.599 6.599 9 C 0.138 3.862 10 H 0.081 0.919 11 N -0.702 5.702 12 C 0.506 3.494 13 O -0.573 6.573 14 C -0.115 4.115 15 C 0.041 3.959 16 C -0.541 4.541 17 H 0.079 0.921 18 C -0.010 4.010 19 N -0.940 5.940 20 Si 0.978 3.022 21 H -0.250 1.250 22 H -0.282 1.282 23 H -0.279 1.279 24 H 0.060 0.940 25 H 0.043 0.957 26 H 0.090 0.910 27 H 0.127 0.873 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.104 0.896 31 H 0.401 0.599 32 H 0.419 0.581 33 H 0.113 0.887 34 H 0.101 0.899 35 H -0.026 1.026 36 H -0.017 1.017 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.000 11.837 -25.974 28.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.123 0.877 4 C -0.169 4.169 5 C -0.021 4.021 6 N -0.359 5.359 7 C 0.280 3.720 8 O -0.478 6.478 9 C 0.030 3.970 10 H 0.100 0.900 11 N -0.359 5.359 12 C 0.295 3.705 13 O -0.450 6.450 14 C -0.155 4.155 15 C 0.003 3.997 16 C -0.579 4.579 17 H 0.098 0.902 18 C -0.207 4.207 19 N -0.580 5.580 20 Si 0.801 3.199 21 H -0.173 1.173 22 H -0.208 1.208 23 H -0.205 1.205 24 H 0.079 0.921 25 H 0.062 0.938 26 H 0.109 0.891 27 H 0.146 0.854 28 H 0.090 0.910 29 H 0.108 0.892 30 H 0.122 0.878 31 H 0.236 0.764 32 H 0.259 0.741 33 H 0.131 0.869 34 H 0.120 0.880 35 H -0.008 1.008 36 H 0.001 0.999 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.430 12.130 -24.623 27.486 hybrid contribution 0.320 -0.886 0.861 1.276 sum 1.750 11.244 -23.762 26.346 Atomic orbital electron populations 1.21802 0.92608 1.02871 1.02931 1.21629 0.97971 1.00121 0.91362 0.87685 1.22078 0.94295 1.01697 0.98853 1.21802 0.93981 1.02883 0.83463 1.45596 1.13472 1.68873 1.07996 1.21046 0.91431 0.76384 0.83103 1.90820 1.69219 1.49707 1.38077 1.20943 0.86859 0.86984 1.02245 0.90050 1.45732 1.57969 1.22491 1.09729 1.21540 0.78723 0.87507 0.82777 1.90714 1.48674 1.65749 1.39871 1.21626 1.01676 0.92208 0.99964 1.18698 0.94600 0.95185 0.91184 1.21738 1.35737 1.05878 0.94548 0.90247 1.26205 0.96570 1.02389 0.95514 1.70214 1.46835 1.41194 0.99793 0.85215 0.77774 0.77854 0.79018 1.17276 1.20796 1.20505 0.92084 0.93778 0.89084 0.85443 0.90979 0.89163 0.87761 0.76408 0.74110 0.86880 0.88049 1.00753 0.99867 0.92888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 8.93 71.98 0.64 -1.05 16 2 C -0.09 -1.19 2.58 -10.66 -0.03 -1.21 16 3 H 0.11 1.11 8.13 -2.39 -0.02 1.09 16 4 C -0.13 -0.87 5.28 30.68 0.16 -0.71 16 5 C 0.10 0.73 7.17 86.49 0.62 1.35 16 6 N -0.71 -13.07 5.45 -467.32 -2.55 -15.62 16 7 C 0.50 15.01 7.22 87.71 0.63 15.64 16 8 O -0.60 -26.73 17.34 -2.99 -0.05 -26.78 16 9 C 0.14 3.65 2.29 44.10 0.10 3.75 16 10 H 0.08 2.74 7.58 -2.39 -0.02 2.72 16 11 N -0.70 -19.78 4.18 -446.79 -1.87 -21.65 16 12 C 0.51 21.22 7.77 87.65 0.68 21.90 16 13 O -0.57 -31.33 15.20 -2.99 -0.05 -31.37 16 14 C -0.12 -4.83 5.64 29.85 0.17 -4.66 16 15 C 0.04 2.40 4.26 29.85 0.13 2.53 16 16 C -0.54 -31.68 9.11 25.60 0.23 -31.44 16 17 H 0.08 4.18 7.74 -2.91 -0.02 4.16 16 18 C -0.01 -0.58 5.46 84.65 0.46 -0.12 16 19 N -0.94 -61.77 13.29 21.45 0.28 -61.48 16 20 Si 0.98 45.24 29.54 68.60 2.03 47.26 16 21 H -0.25 -10.51 7.11 99.48 0.71 -9.80 16 22 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 23 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 24 H 0.06 0.74 6.76 -2.39 -0.02 0.72 16 25 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.13 0.02 8.14 -2.38 -0.02 0.00 16 28 H 0.07 0.56 6.95 -2.39 -0.02 0.54 16 29 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.10 0.30 8.14 -2.38 -0.02 0.28 16 31 H 0.40 7.09 8.80 -92.71 -0.82 6.27 16 32 H 0.42 8.09 6.56 -92.71 -0.61 7.48 16 33 H 0.11 3.98 8.14 -2.38 -0.02 3.96 16 34 H 0.10 3.78 8.14 -2.39 -0.02 3.76 16 35 H -0.03 -1.76 8.10 -2.38 -0.02 -1.78 16 36 H -0.02 -1.13 8.10 -2.39 -0.02 -1.14 16 37 H 0.26 16.07 8.31 -92.71 -0.77 15.30 16 Total: -1.00 -93.89 306.04 1.26 -92.63 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -0.34 Total: 11.03 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: 3.80 Total: 5.99 kcal Atomic # 7 Polarization: -94.62 SS G_CDS: -4.13 Total: -98.75 kcal Atomic # 8 Polarization: -58.06 SS G_CDS: -0.10 Total: -58.16 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Total: -93.89 1.26 -92.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291532510.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.131 kcal (2) G-P(sol) polarization free energy of solvation -93.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds