Wall clock time and date at job start Sun Mar 29 2020 23:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.46878 * 2 1 4 4 N 1.46499 * 109.47080 * 239.99265 * 2 1 3 5 5 C 1.34775 * 119.99299 * 85.00358 * 4 2 1 6 6 O 1.21276 * 120.00699 * 359.97438 * 5 4 2 7 7 C 1.50709 * 119.99599 * 179.97438 * 5 4 2 8 8 C 1.55238 * 110.58096 * 294.87565 * 7 5 4 9 9 C 1.54894 * 102.58338 * 203.33573 * 8 7 5 10 10 C 1.54266 * 104.31305 * 37.93170 * 9 8 7 11 11 C 1.53869 * 106.60031 * 336.32486 * 10 9 8 12 12 C 1.50705 * 109.46744 * 119.99575 * 2 1 3 13 13 O 1.21296 * 119.99775 * 120.00656 * 12 2 1 14 14 N 1.34773 * 120.00202 * 299.99745 * 12 2 1 15 15 C 1.37095 * 120.00238 * 180.02562 * 14 12 2 16 16 H 1.07998 * 119.99760 * 359.97438 * 15 14 12 17 17 C 1.38953 * 120.00174 * 180.02562 * 15 14 12 18 18 N 1.31409 * 120.00130 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99985 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47033 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47221 * 119.99460 * 19 17 15 22 22 H 1.48503 * 109.47195 * 239.99786 * 19 17 15 23 23 H 1.08993 * 109.47204 * 60.00734 * 1 2 3 24 24 H 1.09006 * 109.47290 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47261 * 300.00416 * 1 2 3 26 26 H 0.96998 * 120.00025 * 264.99975 * 4 2 1 27 27 H 1.09006 * 110.43428 * 57.45967 * 7 5 4 28 28 H 1.08996 * 110.89448 * 85.05138 * 8 7 5 29 29 H 1.08993 * 110.76342 * 321.56803 * 8 7 5 30 30 H 1.09002 * 110.48891 * 279.18596 * 9 8 7 31 31 H 1.08998 * 110.48494 * 156.67683 * 9 8 7 32 32 H 1.09001 * 110.03084 * 95.60669 * 10 9 8 33 33 H 1.08996 * 110.03108 * 216.98559 * 10 9 8 34 34 H 1.08999 * 110.04012 * 119.28327 * 11 10 9 35 35 H 1.09006 * 110.02998 * 240.67078 * 11 10 9 36 36 H 0.97008 * 120.00056 * 0.02562 * 14 12 2 37 37 H 0.96999 * 120.00067 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6908 -1.1961 5 6 2.1470 -0.0184 -2.3570 6 8 1.8582 1.1582 -2.4117 7 6 2.6499 -0.7288 -3.5874 8 6 4.1205 -1.1856 -3.3910 9 6 4.6330 -1.3088 -4.8475 10 6 3.9719 -0.1265 -5.5856 11 6 2.7111 0.2423 -4.7844 12 6 2.0323 -0.7104 1.2306 13 8 2.7297 -1.6965 1.1194 14 7 1.7067 -0.2498 2.4546 15 6 2.1640 -0.8957 3.5741 16 1 2.7849 -1.7738 3.4751 17 6 1.8279 -0.4212 4.8361 18 7 1.0721 0.6470 4.9566 19 14 2.4505 -1.3017 6.3614 20 1 3.2754 -2.4685 5.9573 21 1 3.2751 -0.3682 7.1699 22 1 1.2954 -1.7688 7.1694 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 2.2490 -1.6319 -1.1524 27 1 2.0135 -1.5825 -3.8208 28 1 4.1637 -2.1493 -2.8835 29 1 4.6889 -0.4337 -2.8437 30 1 4.3169 -2.2561 -5.2843 31 1 5.7188 -1.2189 -4.8787 32 1 4.6551 0.7223 -5.6183 33 1 3.6983 -0.4243 -6.5978 34 1 2.7822 1.2700 -4.4282 35 1 1.8247 0.1239 -5.4078 36 1 1.1487 0.5387 2.5436 37 1 0.8377 0.9785 5.8376 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299722698.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:36:27 Heat of formation + Delta-G solvation = -100.541080 kcal Electronic energy + Delta-G solvation = -18857.966114 eV Core-core repulsion = 15827.014354 eV Total energy + Delta-G solvation = -3030.951760 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.03870 -38.43756 -37.00523 -34.62548 -33.88700 -31.62326 -30.51109 -28.81913 -28.55415 -25.33163 -23.69969 -21.67291 -20.52718 -19.60718 -19.19583 -18.13292 -17.39685 -15.94131 -15.70693 -15.44768 -14.86449 -14.58884 -14.23360 -13.88780 -13.66058 -13.43635 -13.25450 -12.70803 -12.08494 -11.93434 -11.78543 -11.63229 -11.34648 -11.21728 -11.20984 -11.16235 -11.01753 -10.82932 -10.50531 -10.39791 -10.31148 -9.62936 -9.51682 -8.88538 -8.42574 -8.08097 -6.50417 -3.92120 2.87038 3.10870 3.22580 3.28720 3.42617 3.76579 4.11990 4.43142 4.52500 4.71653 4.84207 5.16128 5.18527 5.27874 5.38880 5.42353 5.49863 5.56154 5.60819 5.68885 5.79245 5.83120 5.89573 5.98887 6.10446 6.13674 6.21371 6.25843 6.30585 6.52246 6.79658 7.47203 7.86442 7.94402 8.46247 8.52307 9.06366 9.41646 9.89906 10.66640 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.041990 B = 0.004241 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.667810 B = 6600.241485 C = 7037.291365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.130 3.870 3 H 0.098 0.902 4 N -0.701 5.701 5 C 0.519 3.481 6 O -0.550 6.550 7 C -0.113 4.113 8 C -0.114 4.114 9 C -0.123 4.123 10 C -0.124 4.124 11 C -0.112 4.112 12 C 0.433 3.567 13 O -0.596 6.596 14 N -0.549 5.549 15 C -0.304 4.304 16 H 0.105 0.895 17 C 0.025 3.975 18 N -0.895 5.895 19 Si 0.932 3.068 20 H -0.267 1.267 21 H -0.280 1.280 22 H -0.280 1.280 23 H 0.061 0.939 24 H 0.059 0.941 25 H 0.072 0.928 26 H 0.408 0.592 27 H 0.098 0.902 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.064 0.936 36 H 0.395 0.605 37 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.682 -2.007 -15.629 15.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.022 3.978 3 H 0.116 0.884 4 N -0.353 5.353 5 C 0.305 3.695 6 O -0.428 6.428 7 C -0.134 4.134 8 C -0.152 4.152 9 C -0.161 4.161 10 C -0.162 4.162 11 C -0.150 4.150 12 C 0.218 3.782 13 O -0.482 6.482 14 N -0.184 5.184 15 C -0.434 4.434 16 H 0.123 0.877 17 C -0.177 4.177 18 N -0.536 5.536 19 Si 0.758 3.242 20 H -0.192 1.192 21 H -0.206 1.206 22 H -0.206 1.206 23 H 0.080 0.920 24 H 0.078 0.922 25 H 0.091 0.909 26 H 0.245 0.755 27 H 0.116 0.884 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.103 0.897 35 H 0.083 0.917 36 H 0.229 0.771 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.865 -1.721 -15.526 15.732 hybrid contribution -0.036 -0.342 0.999 1.056 sum 1.829 -2.063 -14.528 14.787 Atomic orbital electron populations 1.22093 0.94030 1.02496 1.02712 1.20664 0.94765 0.97573 0.84817 0.88378 1.45759 1.66179 1.14829 1.08546 1.20495 0.77283 0.87211 0.84526 1.90651 1.50854 1.16137 1.85141 1.22206 0.98301 0.99428 0.93495 1.22554 0.93426 1.01965 0.97290 1.22353 1.00173 0.98515 0.95042 1.22148 0.96988 0.98270 0.98799 1.22062 0.97729 1.00488 0.94675 1.19783 0.86305 0.87661 0.84441 1.90498 1.42808 1.28711 1.86170 1.41824 1.45021 1.27432 1.04137 1.19782 1.29545 1.11044 0.82979 0.87681 1.25312 0.96632 0.96382 0.99405 1.69620 1.36100 1.22619 1.25238 0.85771 0.78535 0.79262 0.80600 1.19152 1.20625 1.20634 0.92020 0.92229 0.90912 0.75523 0.88366 0.90524 0.90821 0.91478 0.91488 0.91780 0.91902 0.89743 0.91675 0.77107 0.91679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 9.38 37.16 0.35 -2.22 16 2 C 0.13 2.46 2.98 -69.08 -0.21 2.25 16 3 H 0.10 1.91 7.58 -51.93 -0.39 1.52 16 4 N -0.70 -11.73 4.94 -54.93 -0.27 -12.00 16 5 C 0.52 8.22 7.10 -10.98 -0.08 8.14 16 6 O -0.55 -10.36 15.09 5.56 0.08 -10.28 16 7 C -0.11 -1.34 3.25 -89.92 -0.29 -1.63 16 8 C -0.11 -1.26 6.34 -24.55 -0.16 -1.41 16 9 C -0.12 -1.10 6.82 -25.07 -0.17 -1.27 16 10 C -0.12 -1.13 6.80 -25.62 -0.17 -1.31 16 11 C -0.11 -1.24 6.18 -25.62 -0.16 -1.40 16 12 C 0.43 10.05 7.17 -10.98 -0.08 9.97 16 13 O -0.60 -15.40 15.41 5.54 0.09 -15.31 16 14 N -0.55 -13.71 5.18 -10.96 -0.06 -13.76 16 15 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 16 H 0.11 3.00 7.16 -52.49 -0.38 2.62 16 17 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 18 N -0.90 -23.94 13.05 55.50 0.72 -23.22 16 19 Si 0.93 20.58 29.55 -169.99 -5.02 15.56 16 20 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 21 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 22 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 23 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 25 H 0.07 1.20 7.56 -51.93 -0.39 0.80 16 26 H 0.41 6.59 7.79 -40.82 -0.32 6.27 16 27 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.92 8.06 -51.93 -0.42 0.50 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.08 1.12 6.85 -51.93 -0.36 0.77 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.39 9.51 7.32 -40.82 -0.30 9.21 16 37 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 309.67 15.07 4.67 4.67 Total: -1.00 -30.56 309.67 -6.49 -37.05 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: -5.49 Total: 14.05 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: -1.21 Total: 3.25 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: 0.40 Total: -48.98 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: 0.17 Total: -25.59 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.56 -6.49 -37.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299722698.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.494 kcal (2) G-P(sol) polarization free energy of solvation -30.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds