Wall clock time and date at job start Sun Mar 29 2020 23:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.46878 * 2 1 4 4 N 1.46499 * 109.47080 * 239.99265 * 2 1 3 5 5 C 1.34775 * 119.99299 * 85.00358 * 4 2 1 6 6 O 1.21276 * 120.00699 * 359.97438 * 5 4 2 7 7 C 1.50709 * 119.99599 * 179.97438 * 5 4 2 8 8 C 1.55238 * 110.58096 * 294.87565 * 7 5 4 9 9 C 1.54894 * 102.58338 * 203.33573 * 8 7 5 10 10 C 1.54266 * 104.31305 * 37.93170 * 9 8 7 11 11 C 1.53869 * 106.60031 * 336.32486 * 10 9 8 12 12 C 1.50705 * 109.46744 * 119.99575 * 2 1 3 13 13 O 1.21296 * 119.99775 * 120.00656 * 12 2 1 14 14 N 1.34773 * 120.00202 * 299.99745 * 12 2 1 15 15 C 1.37095 * 120.00238 * 180.02562 * 14 12 2 16 16 H 1.07998 * 119.99760 * 359.97438 * 15 14 12 17 17 C 1.38953 * 120.00174 * 180.02562 * 15 14 12 18 18 N 1.31409 * 120.00130 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99985 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47033 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47221 * 119.99460 * 19 17 15 22 22 H 1.48503 * 109.47195 * 239.99786 * 19 17 15 23 23 H 1.08993 * 109.47204 * 60.00734 * 1 2 3 24 24 H 1.09006 * 109.47290 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47261 * 300.00416 * 1 2 3 26 26 H 0.96998 * 120.00025 * 264.99975 * 4 2 1 27 27 H 1.09006 * 110.43428 * 57.45967 * 7 5 4 28 28 H 1.08996 * 110.89448 * 85.05138 * 8 7 5 29 29 H 1.08993 * 110.76342 * 321.56803 * 8 7 5 30 30 H 1.09002 * 110.48891 * 279.18596 * 9 8 7 31 31 H 1.08998 * 110.48494 * 156.67683 * 9 8 7 32 32 H 1.09001 * 110.03084 * 95.60669 * 10 9 8 33 33 H 1.08996 * 110.03108 * 216.98559 * 10 9 8 34 34 H 1.08999 * 110.04012 * 119.28327 * 11 10 9 35 35 H 1.09006 * 110.02998 * 240.67078 * 11 10 9 36 36 H 0.97008 * 120.00056 * 0.02562 * 14 12 2 37 37 H 0.96999 * 120.00067 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6908 -1.1961 5 6 2.1470 -0.0184 -2.3570 6 8 1.8582 1.1582 -2.4117 7 6 2.6499 -0.7288 -3.5874 8 6 4.1205 -1.1856 -3.3910 9 6 4.6330 -1.3088 -4.8475 10 6 3.9719 -0.1265 -5.5856 11 6 2.7111 0.2423 -4.7844 12 6 2.0323 -0.7104 1.2306 13 8 2.7297 -1.6965 1.1194 14 7 1.7067 -0.2498 2.4546 15 6 2.1640 -0.8957 3.5741 16 1 2.7849 -1.7738 3.4751 17 6 1.8279 -0.4212 4.8361 18 7 1.0721 0.6470 4.9566 19 14 2.4505 -1.3017 6.3614 20 1 3.2754 -2.4685 5.9573 21 1 3.2751 -0.3682 7.1699 22 1 1.2954 -1.7688 7.1694 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 2.2490 -1.6319 -1.1524 27 1 2.0135 -1.5825 -3.8208 28 1 4.1637 -2.1493 -2.8835 29 1 4.6889 -0.4337 -2.8437 30 1 4.3169 -2.2561 -5.2843 31 1 5.7188 -1.2189 -4.8787 32 1 4.6551 0.7223 -5.6183 33 1 3.6983 -0.4243 -6.5978 34 1 2.7822 1.2700 -4.4282 35 1 1.8247 0.1239 -5.4078 36 1 1.1487 0.5387 2.5436 37 1 0.8377 0.9785 5.8376 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299722698.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:36:27 Heat of formation + Delta-G solvation = -121.353835 kcal Electronic energy + Delta-G solvation = -18858.868622 eV Core-core repulsion = 15827.014354 eV Total energy + Delta-G solvation = -3031.854269 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.38581 -40.13104 -38.06507 -36.31356 -35.71044 -33.50784 -31.95187 -29.75967 -29.48373 -27.25012 -25.23310 -22.91262 -21.37277 -21.08222 -20.61984 -20.05291 -18.72325 -17.33262 -17.26986 -16.70752 -16.47208 -15.97209 -15.84131 -15.45530 -15.18612 -14.50813 -14.39102 -14.26741 -13.58323 -13.54071 -13.28916 -12.95600 -12.90047 -12.58225 -12.43884 -12.16990 -12.11352 -12.04268 -11.96662 -11.68955 -11.57793 -11.26730 -10.81227 -10.54145 -10.12679 -10.07615 -8.51419 -6.01549 1.34548 1.42302 1.56032 1.60099 1.90850 2.06533 2.31638 3.07725 3.15655 3.53065 3.64202 3.81949 4.04426 4.13950 4.23287 4.28344 4.48868 4.53811 4.60364 4.61794 4.67963 4.79928 4.81770 4.97816 5.12144 5.12246 5.22326 5.28795 5.32846 5.37958 5.44546 5.50875 5.91893 6.46746 6.55933 7.03433 7.20065 7.44480 7.94776 8.65703 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.041990 B = 0.004241 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.667810 B = 6600.241485 C = 7037.291365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.140 3.860 3 H 0.092 0.908 4 N -0.701 5.701 5 C 0.517 3.483 6 O -0.582 6.582 7 C -0.108 4.108 8 C -0.117 4.117 9 C -0.117 4.117 10 C -0.121 4.121 11 C -0.112 4.112 12 C 0.435 3.565 13 O -0.623 6.623 14 N -0.558 5.558 15 C -0.337 4.337 16 H 0.085 0.915 17 C -0.010 4.010 18 N -0.916 5.916 19 Si 0.996 3.004 20 H -0.270 1.270 21 H -0.272 1.272 22 H -0.270 1.270 23 H 0.073 0.927 24 H 0.064 0.936 25 H 0.072 0.928 26 H 0.412 0.588 27 H 0.124 0.876 28 H 0.082 0.918 29 H 0.051 0.949 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.397 0.603 37 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.683 -2.857 -16.527 16.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.031 3.969 3 H 0.109 0.891 4 N -0.353 5.353 5 C 0.305 3.695 6 O -0.462 6.462 7 C -0.129 4.129 8 C -0.155 4.155 9 C -0.154 4.154 10 C -0.158 4.158 11 C -0.150 4.150 12 C 0.221 3.779 13 O -0.511 6.511 14 N -0.193 5.193 15 C -0.467 4.467 16 H 0.103 0.897 17 C -0.210 4.210 18 N -0.556 5.556 19 Si 0.820 3.180 20 H -0.195 1.195 21 H -0.197 1.197 22 H -0.195 1.195 23 H 0.092 0.908 24 H 0.083 0.917 25 H 0.091 0.909 26 H 0.249 0.751 27 H 0.142 0.858 28 H 0.101 0.899 29 H 0.070 0.930 30 H 0.104 0.896 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.232 0.768 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.859 -2.565 -16.444 16.746 hybrid contribution -0.029 -0.047 1.242 1.243 sum 1.829 -2.613 -15.202 15.533 Atomic orbital electron populations 1.22013 0.92013 1.03000 1.03303 1.20477 0.96198 0.96588 0.83659 0.89050 1.45793 1.66382 1.14937 1.08181 1.21245 0.76216 0.86916 0.85096 1.90637 1.52201 1.17689 1.85672 1.22310 0.99096 0.99999 0.91498 1.22575 0.92540 1.01475 0.98861 1.22350 1.00628 0.99259 0.93178 1.22143 0.95839 0.98362 0.99495 1.22071 0.99516 0.98692 0.94718 1.20496 0.85084 0.87096 0.85177 1.90469 1.43793 1.30020 1.86803 1.41865 1.45459 1.27592 1.04373 1.19779 1.30903 1.11499 0.84474 0.89669 1.26116 0.96337 0.96896 1.01695 1.69682 1.36331 1.23287 1.26316 0.84820 0.78233 0.78072 0.76904 1.19461 1.19716 1.19490 0.90779 0.91739 0.90914 0.75061 0.85782 0.89934 0.92977 0.89639 0.90724 0.92024 0.89858 0.92469 0.90422 0.76833 0.91067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.72 9.38 71.98 0.68 -4.04 16 2 C 0.14 5.29 2.98 44.25 0.13 5.42 16 3 H 0.09 3.61 7.58 -2.39 -0.02 3.59 16 4 N -0.70 -23.21 4.94 -446.10 -2.20 -25.41 16 5 C 0.52 16.13 7.10 87.66 0.62 16.75 16 6 O -0.58 -21.98 15.09 -3.02 -0.05 -22.03 16 7 C -0.11 -2.40 3.25 -10.34 -0.03 -2.43 16 8 C -0.12 -2.39 6.34 32.01 0.20 -2.19 16 9 C -0.12 -1.77 6.82 31.67 0.22 -1.55 16 10 C -0.12 -1.91 6.80 31.32 0.21 -1.70 16 11 C -0.11 -2.33 6.18 31.32 0.19 -2.13 16 12 C 0.43 20.51 7.17 87.66 0.63 21.13 16 13 O -0.62 -32.73 15.41 -3.08 -0.05 -32.78 16 14 N -0.56 -28.36 5.18 -306.98 -1.59 -29.95 16 15 C -0.34 -18.73 9.68 84.04 0.81 -17.91 16 16 H 0.09 4.99 7.16 -2.91 -0.02 4.97 16 17 C -0.01 -0.51 5.50 84.93 0.47 -0.05 16 18 N -0.92 -48.77 13.05 21.66 0.28 -48.49 16 19 Si 1.00 41.88 29.55 68.60 2.03 43.90 16 20 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 21 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 22 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 23 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 24 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 25 H 0.07 2.36 7.56 -2.39 -0.02 2.35 16 26 H 0.41 13.09 7.79 -92.71 -0.72 12.37 16 27 H 0.12 2.15 8.14 -2.38 -0.02 2.13 16 28 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.05 1.28 8.06 -2.39 -0.02 1.27 16 30 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.06 1.51 6.85 -2.39 -0.02 1.50 16 35 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 36 H 0.40 19.50 7.32 -92.70 -0.68 18.82 16 37 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 Total: -1.00 -65.50 309.67 2.24 -63.26 By element: Atomic # 1 Polarization: 40.50 SS G_CDS: -0.32 Total: 40.18 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: 4.13 Total: 11.30 kcal Atomic # 7 Polarization: -100.33 SS G_CDS: -3.51 Total: -103.85 kcal Atomic # 8 Polarization: -54.71 SS G_CDS: -0.09 Total: -54.81 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.90 kcal Total: -65.50 2.24 -63.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299722698.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.089 kcal (2) G-P(sol) polarization free energy of solvation -65.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds