Wall clock time and date at job start Sun Mar 29 2020 23:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47079 * 2 1 4 4 C 1.52992 * 109.47321 * 119.99972 * 2 1 3 5 5 N 1.46499 * 109.47267 * 175.00102 * 4 2 1 6 6 C 1.34784 * 119.99971 * 180.02562 * 5 4 2 7 7 O 1.21686 * 119.99841 * 359.72674 * 6 5 4 8 8 C 1.46368 * 119.99821 * 180.02562 * 6 5 4 9 9 H 1.07999 * 120.00129 * 359.97438 * 8 6 5 10 10 C 1.40045 * 119.99878 * 180.02562 * 8 6 5 11 11 N 1.30668 * 120.00214 * 0.02562 * 10 8 6 12 12 Si 1.86808 * 120.00091 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.46665 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.46869 * 119.99907 * 12 10 8 15 15 H 1.48493 * 109.47305 * 239.99962 * 12 10 8 16 16 N 1.46498 * 109.46876 * 240.00089 * 2 1 3 17 17 C 1.45761 * 117.94568 * 119.73706 * 16 2 1 18 18 C 1.53097 * 110.38448 * 160.74086 * 17 16 2 19 19 C 1.53346 * 108.52914 * 51.11839 * 18 17 16 20 20 C 1.53071 * 108.42195 * 292.30452 * 19 18 17 21 21 C 1.33347 * 117.94887 * 299.99903 * 16 2 1 22 22 O 1.21279 * 118.24875 * 2.24412 * 21 16 2 23 23 H 1.08998 * 109.47100 * 59.99858 * 1 2 3 24 24 H 1.08998 * 109.47079 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46939 * 300.00107 * 1 2 3 26 26 H 1.09004 * 109.47330 * 55.00006 * 4 2 1 27 27 H 1.09005 * 109.47124 * 295.00210 * 4 2 1 28 28 H 0.96999 * 119.99984 * 359.97438 * 5 4 2 29 29 H 0.97000 * 120.00448 * 180.02562 * 11 10 8 30 30 H 1.08997 * 109.29988 * 281.23848 * 17 16 2 31 31 H 1.09003 * 109.29654 * 40.60985 * 17 16 2 32 32 H 1.09004 * 109.80921 * 291.32605 * 18 17 16 33 33 H 1.09008 * 109.54306 * 170.75122 * 18 17 16 34 34 H 1.09004 * 109.67225 * 172.57406 * 19 18 17 35 35 H 1.08998 * 109.67487 * 52.04031 * 19 18 17 36 36 H 1.08998 * 109.40008 * 288.77155 * 20 19 18 37 37 H 1.08997 * 109.32846 * 168.98528 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5001 -0.8263 1.1905 6 6 4.1731 -1.4291 2.1907 7 8 3.5683 -1.8816 3.1447 8 6 5.6319 -1.5336 2.1323 9 1 6.1690 -1.1281 1.2876 10 6 6.3311 -2.1604 3.1712 11 7 5.6812 -2.6525 4.1925 12 14 8.1929 -2.2945 3.0964 13 1 8.6846 -1.6638 1.8451 14 1 8.7865 -1.5996 4.2669 15 1 8.5874 -3.7259 3.1181 16 7 2.0183 -0.6906 -1.1962 17 6 2.8482 0.0621 -2.1286 18 6 3.6412 -0.8914 -3.0262 19 6 2.6684 -1.9061 -3.6390 20 6 2.1402 -2.8067 -2.5197 21 6 1.6713 -1.9668 -1.3664 22 8 0.9377 -2.4765 -0.5462 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.6055 -1.7198 1.2951 27 1 1.7517 -0.1583 2.1369 28 1 3.9824 -0.4627 0.4315 29 1 6.1655 -3.0863 4.9123 30 1 2.2121 0.6975 -2.7449 31 1 3.5427 0.6881 -1.5683 32 1 4.3925 -1.4157 -2.4355 33 1 4.1273 -0.3249 -3.8206 34 1 3.1887 -2.5107 -4.3819 35 1 1.8378 -1.3801 -4.1097 36 1 2.9361 -3.4713 -2.1837 37 1 1.3077 -3.4006 -2.8971 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331075713.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:31:46 Heat of formation + Delta-G solvation = -80.898158 kcal Electronic energy + Delta-G solvation = -19756.910865 eV Core-core repulsion = 16726.810886 eV Total energy + Delta-G solvation = -3030.099979 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.56848 -37.17772 -36.29319 -35.24628 -32.69167 -31.94720 -30.54068 -29.39925 -26.82302 -24.83818 -24.32376 -23.03524 -20.90541 -19.58093 -18.26313 -17.21557 -16.77151 -15.75643 -15.59427 -15.22287 -14.37211 -14.30063 -14.13210 -13.92519 -13.80904 -13.19706 -12.85581 -12.79005 -12.22165 -12.05157 -11.87571 -11.50491 -11.46732 -11.22890 -11.06145 -11.02689 -10.94374 -10.74290 -10.56478 -10.38884 -10.15090 -9.13998 -8.80490 -8.46084 -7.52065 -7.33437 -6.12575 -4.58168 2.94651 3.14672 3.16233 3.22243 3.26502 4.13868 4.60007 4.66375 4.67106 4.68406 4.78326 4.92238 5.22514 5.31461 5.41910 5.46544 5.47849 5.65135 5.66272 5.76903 5.83061 5.85522 5.88194 5.92409 6.05843 6.14680 6.34997 6.51018 6.74846 6.98537 7.47508 7.73925 8.00448 8.19972 8.39196 8.49642 9.07720 9.63920 10.67523 10.87833 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.023331 B = 0.006501 C = 0.005717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.806881 B = 4306.148374 C = 4896.784892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.133 3.867 3 H 0.083 0.917 4 C 0.116 3.884 5 N -0.763 5.763 6 C 0.555 3.445 7 O -0.580 6.580 8 C -0.546 4.546 9 H 0.065 0.935 10 C 0.087 3.913 11 N -0.768 5.768 12 Si 0.906 3.094 13 H -0.265 1.265 14 H -0.276 1.276 15 H -0.277 1.277 16 N -0.597 5.597 17 C 0.114 3.886 18 C -0.138 4.138 19 C -0.121 4.121 20 C -0.136 4.136 21 C 0.520 3.480 22 O -0.541 6.541 23 H 0.049 0.951 24 H 0.085 0.915 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.051 0.949 28 H 0.374 0.626 29 H 0.267 0.733 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.100 0.900 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.213 5.860 -16.893 18.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.030 3.970 3 H 0.102 0.898 4 C -0.010 4.010 5 N -0.419 5.419 6 C 0.358 3.642 7 O -0.462 6.462 8 C -0.583 4.583 9 H 0.083 0.917 10 C -0.132 4.132 11 N -0.397 5.397 12 Si 0.730 3.270 13 H -0.189 1.189 14 H -0.202 1.202 15 H -0.202 1.202 16 N -0.331 5.331 17 C -0.009 4.009 18 C -0.176 4.176 19 C -0.158 4.158 20 C -0.176 4.176 21 C 0.309 3.691 22 O -0.419 6.419 23 H 0.068 0.932 24 H 0.104 0.896 25 H 0.082 0.918 26 H 0.093 0.907 27 H 0.070 0.930 28 H 0.205 0.795 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.118 0.882 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.049 5.145 -15.579 17.166 hybrid contribution 1.297 0.242 -0.454 1.395 sum -3.752 5.387 -16.033 17.325 Atomic orbital electron populations 1.22150 0.94481 1.04566 1.01180 1.21401 0.94913 0.95777 0.84936 0.89842 1.21351 0.84076 1.01375 0.94217 1.46020 1.04494 1.65810 1.25537 1.18200 0.88174 0.77150 0.80630 1.90601 1.70222 1.51441 1.33943 1.20886 0.90236 1.40272 1.06941 0.91677 1.25703 0.99646 0.93411 0.94448 1.70038 1.36199 1.27127 1.06373 0.86356 0.83411 0.78364 0.78821 1.18873 1.20190 1.20203 1.47326 1.51068 1.11390 1.23273 1.21450 0.93517 0.94263 0.91710 1.21935 0.98425 0.97856 0.99391 1.21632 0.99208 0.97557 0.97429 1.21678 1.03231 0.98504 0.94178 1.19968 0.80447 0.81592 0.87128 1.90656 1.36799 1.70341 1.44118 0.93191 0.89621 0.91836 0.90690 0.93037 0.79521 0.92236 0.92081 0.90591 0.90232 0.90016 0.90824 0.91475 0.88216 0.88702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.34 9.08 37.16 0.34 -2.00 16 2 C 0.13 2.05 2.76 -67.93 -0.19 1.86 16 3 H 0.08 1.11 7.79 -51.93 -0.40 0.71 16 4 C 0.12 2.45 4.86 -4.05 -0.02 2.43 16 5 N -0.76 -17.90 5.38 -61.72 -0.33 -18.24 16 6 C 0.56 16.52 7.75 -12.99 -0.10 16.42 16 7 O -0.58 -19.82 15.02 5.20 0.08 -19.74 16 8 C -0.55 -15.83 9.54 -35.64 -0.34 -16.17 16 9 H 0.06 1.72 7.85 -52.49 -0.41 1.31 16 10 C 0.09 2.50 5.50 -17.37 -0.10 2.41 16 11 N -0.77 -23.82 11.83 55.55 0.66 -23.16 16 12 Si 0.91 20.49 29.56 -169.99 -5.02 15.46 16 13 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 14 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 15 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 16 N -0.60 -8.39 2.24 -167.26 -0.37 -8.77 16 17 C 0.11 1.16 6.07 -4.39 -0.03 1.13 16 18 C -0.14 -1.24 6.03 -26.50 -0.16 -1.40 16 19 C -0.12 -1.05 6.03 -26.52 -0.16 -1.21 16 20 C -0.14 -1.64 6.03 -28.10 -0.17 -1.81 16 21 C 0.52 8.35 6.88 -11.87 -0.08 8.27 16 22 O -0.54 -10.96 12.52 5.56 0.07 -10.89 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.09 1.43 5.84 -51.93 -0.30 1.13 16 25 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.07 1.86 6.14 -51.93 -0.32 1.54 16 27 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.37 7.65 7.75 -40.82 -0.32 7.33 16 29 H 0.27 7.47 8.29 -40.82 -0.34 7.13 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.75 7.84 -51.93 -0.41 0.34 16 32 H 0.08 0.85 8.12 -51.93 -0.42 0.43 16 33 H 0.08 0.55 8.14 -51.92 -0.42 0.12 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.54 8.12 -51.93 -0.42 0.11 16 36 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 301.28 15.07 4.54 4.54 Total: -1.00 -37.64 301.28 -6.91 -44.56 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -5.52 Total: 6.32 kcal Atomic # 6 Polarization: 10.92 SS G_CDS: -1.00 Total: 9.91 kcal Atomic # 7 Polarization: -50.11 SS G_CDS: -0.05 Total: -50.16 kcal Atomic # 8 Polarization: -30.78 SS G_CDS: 0.15 Total: -30.63 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -37.64 -6.91 -44.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331075713.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.341 kcal (2) G-P(sol) polarization free energy of solvation -37.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds