Wall clock time and date at job start Sun Mar 29 2020 23:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47087 * 2 1 4 4 C 1.50702 * 109.46947 * 120.00134 * 2 1 3 5 5 H 1.07997 * 120.00242 * 120.00305 * 4 2 1 6 6 C 1.37876 * 119.99801 * 299.99780 * 4 2 1 7 7 N 1.31520 * 120.00246 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99986 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47033 * 90.00197 * 8 6 4 10 10 H 1.48498 * 109.47152 * 210.00097 * 8 6 4 11 11 H 1.48499 * 109.46555 * 329.99972 * 8 6 4 12 12 N 1.46499 * 109.47072 * 240.00080 * 2 1 3 13 13 C 1.34770 * 120.00264 * 85.00089 * 12 2 1 14 14 O 1.21286 * 120.00276 * 359.97438 * 13 12 2 15 15 C 1.50700 * 120.00558 * 179.97438 * 13 12 2 16 16 C 1.53006 * 109.39937 * 59.99826 * 15 13 12 17 17 C 1.53070 * 109.40645 * 179.82813 * 15 13 12 18 18 C 1.53340 * 108.42373 * 168.94371 * 17 15 13 19 19 C 1.52919 * 108.67576 * 292.46970 * 18 17 15 20 20 N 1.45750 * 110.48724 * 50.75475 * 19 18 17 21 21 C 1.33175 * 124.05930 * 340.95048 * 20 19 18 22 22 O 1.21287 * 118.11912 * 182.17919 * 21 20 19 23 23 H 1.08999 * 109.47087 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47245 * 300.00189 * 1 2 3 25 25 H 1.09005 * 109.46678 * 60.00122 * 1 2 3 26 26 H 0.96993 * 120.00379 * 180.02562 * 7 6 4 27 27 H 0.96999 * 120.00109 * 265.00061 * 12 2 1 28 28 H 1.09001 * 109.47002 * 60.00152 * 16 15 13 29 29 H 1.08993 * 109.46955 * 180.02562 * 16 15 13 30 30 H 1.09000 * 109.47050 * 300.00418 * 16 15 13 31 31 H 1.09000 * 109.67393 * 288.67867 * 17 15 13 32 32 H 1.09002 * 109.67025 * 49.17353 * 17 15 13 33 33 H 1.09004 * 109.60626 * 52.22806 * 18 17 15 34 34 H 1.09008 * 109.60013 * 172.54946 * 18 17 15 35 35 H 1.09001 * 109.29908 * 171.06588 * 19 18 17 36 36 H 1.09003 * 109.29937 * 290.44152 * 19 18 17 37 37 H 0.96999 * 117.94329 * 160.92520 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9427 0.8297 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.6304 -0.5440 4.4119 10 1 1.3443 -0.9490 5.1123 11 1 2.4878 -2.5653 3.7121 12 7 2.0183 -0.6906 -1.1962 13 6 2.1471 -0.0183 -2.3571 14 8 1.8582 1.1584 -2.4118 15 6 2.6499 -0.7285 -3.5875 16 6 1.7053 -1.8824 -3.9300 17 6 2.6966 0.2553 -4.7592 18 6 3.4631 -0.4017 -5.9134 19 6 4.9277 -0.5581 -5.5023 20 7 5.0256 -1.2041 -4.1994 21 6 4.0250 -1.2713 -3.3232 22 8 4.2373 -1.8004 -2.2526 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 0.7087 1.1613 3.4843 27 1 2.2490 -1.6317 -1.1526 28 1 0.7061 -1.4900 -4.1191 29 1 2.0682 -2.3971 -4.8195 30 1 1.6688 -2.5821 -3.0951 31 1 1.6823 0.4922 -5.0801 32 1 3.2068 1.1682 -4.4517 33 1 3.0360 -1.3820 -6.1250 34 1 3.3952 0.2263 -6.8018 35 1 5.4476 -1.1637 -6.2447 36 1 5.3950 0.4254 -5.4528 37 1 5.8721 -1.6104 -3.9560 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336214637.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:27:29 Heat of formation + Delta-G solvation = -85.448275 kcal Electronic energy + Delta-G solvation = -19837.316812 eV Core-core repulsion = 16807.019525 eV Total energy + Delta-G solvation = -3030.297287 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.94414 -38.31618 -36.56966 -34.70486 -33.94454 -32.18792 -30.66212 -28.63079 -26.79041 -25.15546 -24.30826 -22.83404 -21.38838 -19.56694 -18.39544 -17.52436 -16.95583 -16.24449 -15.62420 -15.11770 -14.89620 -14.53055 -14.33721 -14.11960 -13.50845 -13.30983 -12.90540 -12.41197 -12.28846 -12.27253 -11.86650 -11.58411 -11.39030 -11.28407 -10.95738 -10.88654 -10.77123 -10.64089 -10.21870 -10.13237 -9.62596 -9.11429 -8.95572 -8.91239 -8.43651 -7.75815 -6.02075 -4.09441 2.64739 3.09372 3.32832 3.38461 3.42469 3.56360 4.07298 4.44825 4.48988 4.58643 4.72702 4.77452 5.08634 5.13209 5.30102 5.39351 5.43756 5.54683 5.60780 5.75460 5.87334 5.95530 6.07538 6.29288 6.74933 6.90046 7.04186 7.23271 7.25416 7.56082 7.68433 7.81556 8.02770 8.23526 8.26366 8.81359 8.89449 9.23487 9.57279 11.04228 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.033636 B = 0.005965 C = 0.005462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.241860 B = 4692.564296 C = 5125.096287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.262 3.738 3 H 0.046 0.954 4 C -0.527 4.527 5 H 0.063 0.937 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.902 3.098 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.273 1.273 12 N -0.686 5.686 13 C 0.518 3.482 14 O -0.555 6.555 15 C -0.098 4.098 16 C -0.132 4.132 17 C -0.101 4.101 18 C -0.139 4.139 19 C 0.109 3.891 20 N -0.720 5.720 21 C 0.530 3.470 22 O -0.531 6.531 23 H 0.026 0.974 24 H 0.090 0.910 25 H 0.014 0.986 26 H 0.263 0.737 27 H 0.397 0.603 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.956 -4.851 -18.022 19.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.161 3.839 3 H 0.064 0.936 4 C -0.565 4.565 5 H 0.081 0.919 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.198 1.198 12 N -0.333 5.333 13 C 0.301 3.699 14 O -0.435 6.435 15 C -0.104 4.104 16 C -0.190 4.190 17 C -0.139 4.139 18 C -0.177 4.177 19 C -0.015 4.015 20 N -0.373 5.373 21 C 0.315 3.685 22 O -0.406 6.406 23 H 0.045 0.955 24 H 0.109 0.891 25 H 0.033 0.967 26 H 0.073 0.927 27 H 0.232 0.768 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 4.540 -4.079 -17.347 18.389 hybrid contribution 0.846 -0.978 0.847 1.546 sum 5.387 -5.057 -16.500 18.079 Atomic orbital electron populations 1.22070 0.98397 0.99102 1.00856 1.18765 0.90969 0.93949 0.80250 0.93572 1.21267 1.31860 1.13159 0.90221 0.91896 1.24883 0.94901 0.95029 0.98994 1.69908 1.36259 1.22681 1.23692 0.86442 0.78521 0.79973 0.82139 1.20629 1.21155 1.19812 1.46519 1.62768 1.14304 1.09729 1.19585 0.79249 0.86971 0.84137 1.90647 1.52399 1.15612 1.84820 1.20980 0.93592 0.98327 0.97535 1.21782 0.98619 0.96138 1.02445 1.21551 1.02361 0.97729 0.92239 1.21972 0.94283 1.02320 0.99094 1.21392 0.97916 0.98041 0.84172 1.45333 1.14979 1.59103 1.17875 1.19675 0.86147 0.78987 0.83705 1.90808 1.82570 1.43958 1.23299 0.95450 0.89113 0.96691 0.92731 0.76842 0.90664 0.91537 0.91047 0.89939 0.90020 0.90730 0.89504 0.90645 0.91604 0.76464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.78 9.26 37.16 0.34 -3.44 16 2 C 0.26 7.17 2.56 -69.08 -0.18 6.99 16 3 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 4 C -0.53 -15.04 8.73 -34.44 -0.30 -15.34 16 5 H 0.06 1.78 7.74 -52.49 -0.41 1.37 16 6 C 0.06 1.82 5.30 -17.82 -0.09 1.73 16 7 N -0.89 -26.00 11.32 55.43 0.63 -25.38 16 8 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 12 N -0.69 -16.03 4.45 -54.93 -0.24 -16.27 16 13 C 0.52 11.14 6.35 -10.99 -0.07 11.07 16 14 O -0.55 -13.67 15.45 5.55 0.09 -13.58 16 15 C -0.10 -1.53 0.60 -157.03 -0.09 -1.62 16 16 C -0.13 -1.69 8.16 37.16 0.30 -1.38 16 17 C -0.10 -1.27 4.22 -26.52 -0.11 -1.38 16 18 C -0.14 -1.13 5.98 -26.60 -0.16 -1.29 16 19 C 0.11 0.86 7.17 -4.49 -0.03 0.83 16 20 N -0.72 -8.27 5.44 -61.43 -0.33 -8.60 16 21 C 0.53 8.42 6.51 -11.95 -0.08 8.34 16 22 O -0.53 -10.56 15.55 5.55 0.09 -10.47 16 23 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.09 2.54 6.07 -51.93 -0.32 2.22 16 25 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 27 H 0.40 8.84 6.60 -40.82 -0.27 8.57 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.07 0.66 6.59 -51.93 -0.34 0.31 16 30 H 0.07 0.98 7.56 -51.93 -0.39 0.59 16 31 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 32 H 0.08 1.17 7.72 -51.93 -0.40 0.77 16 33 H 0.07 0.56 6.46 -51.93 -0.34 0.22 16 34 H 0.09 0.52 8.14 -51.92 -0.42 0.09 16 35 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.40 4.07 8.80 -40.82 -0.36 3.72 16 LS Contribution 298.26 15.07 4.49 4.49 Total: -1.00 -34.15 298.26 -6.08 -40.23 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -5.31 Total: 8.26 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: -0.47 Total: 4.52 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: 0.05 Total: -50.25 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: 0.17 Total: -24.06 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -34.15 -6.08 -40.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336214637.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.218 kcal (2) G-P(sol) polarization free energy of solvation -34.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds