Wall clock time and date at job start Sun Mar 29 2020 23:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47087 * 2 1 4 4 C 1.50702 * 109.46947 * 120.00134 * 2 1 3 5 5 H 1.07997 * 120.00242 * 120.00305 * 4 2 1 6 6 C 1.37876 * 119.99801 * 299.99780 * 4 2 1 7 7 N 1.31520 * 120.00246 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99986 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47033 * 90.00197 * 8 6 4 10 10 H 1.48498 * 109.47152 * 210.00097 * 8 6 4 11 11 H 1.48499 * 109.46555 * 329.99972 * 8 6 4 12 12 N 1.46499 * 109.47072 * 240.00080 * 2 1 3 13 13 C 1.34770 * 120.00264 * 85.00089 * 12 2 1 14 14 O 1.21286 * 120.00276 * 359.97438 * 13 12 2 15 15 C 1.50700 * 120.00558 * 179.97438 * 13 12 2 16 16 C 1.53006 * 109.39937 * 59.99826 * 15 13 12 17 17 C 1.53070 * 109.40645 * 179.82813 * 15 13 12 18 18 C 1.53340 * 108.42373 * 168.94371 * 17 15 13 19 19 C 1.52919 * 108.67576 * 292.46970 * 18 17 15 20 20 N 1.45750 * 110.48724 * 50.75475 * 19 18 17 21 21 C 1.33175 * 124.05930 * 340.95048 * 20 19 18 22 22 O 1.21287 * 118.11912 * 182.17919 * 21 20 19 23 23 H 1.08999 * 109.47087 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47245 * 300.00189 * 1 2 3 25 25 H 1.09005 * 109.46678 * 60.00122 * 1 2 3 26 26 H 0.96993 * 120.00379 * 180.02562 * 7 6 4 27 27 H 0.96999 * 120.00109 * 265.00061 * 12 2 1 28 28 H 1.09001 * 109.47002 * 60.00152 * 16 15 13 29 29 H 1.08993 * 109.46955 * 180.02562 * 16 15 13 30 30 H 1.09000 * 109.47050 * 300.00418 * 16 15 13 31 31 H 1.09000 * 109.67393 * 288.67867 * 17 15 13 32 32 H 1.09002 * 109.67025 * 49.17353 * 17 15 13 33 33 H 1.09004 * 109.60626 * 52.22806 * 18 17 15 34 34 H 1.09008 * 109.60013 * 172.54946 * 18 17 15 35 35 H 1.09001 * 109.29908 * 171.06588 * 19 18 17 36 36 H 1.09003 * 109.29937 * 290.44152 * 19 18 17 37 37 H 0.96999 * 117.94329 * 160.92520 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9427 0.8297 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.6304 -0.5440 4.4119 10 1 1.3443 -0.9490 5.1123 11 1 2.4878 -2.5653 3.7121 12 7 2.0183 -0.6906 -1.1962 13 6 2.1471 -0.0183 -2.3571 14 8 1.8582 1.1584 -2.4118 15 6 2.6499 -0.7285 -3.5875 16 6 1.7053 -1.8824 -3.9300 17 6 2.6966 0.2553 -4.7592 18 6 3.4631 -0.4017 -5.9134 19 6 4.9277 -0.5581 -5.5023 20 7 5.0256 -1.2041 -4.1994 21 6 4.0250 -1.2713 -3.3232 22 8 4.2373 -1.8004 -2.2526 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 0.7087 1.1613 3.4843 27 1 2.2490 -1.6317 -1.1526 28 1 0.7061 -1.4900 -4.1191 29 1 2.0682 -2.3971 -4.8195 30 1 1.6688 -2.5821 -3.0951 31 1 1.6823 0.4922 -5.0801 32 1 3.2068 1.1682 -4.4517 33 1 3.0360 -1.3820 -6.1250 34 1 3.3952 0.2263 -6.8018 35 1 5.4476 -1.1637 -6.2447 36 1 5.3950 0.4254 -5.4528 37 1 5.8721 -1.6104 -3.9560 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336214637.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:27:29 Heat of formation + Delta-G solvation = -112.128780 kcal Electronic energy + Delta-G solvation = -19838.473766 eV Core-core repulsion = 16807.019525 eV Total energy + Delta-G solvation = -3031.454240 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.21066 -39.95098 -37.70740 -36.67356 -35.17442 -34.21034 -31.74359 -30.54371 -27.76103 -27.36773 -25.52011 -23.90165 -23.09198 -21.36545 -19.80383 -18.75551 -18.27170 -17.83306 -17.26788 -16.83476 -16.32676 -15.92694 -15.65602 -15.47047 -14.91999 -14.44169 -14.40111 -14.29911 -13.76196 -13.42236 -13.36434 -13.03753 -12.91704 -12.81785 -12.69791 -12.33302 -12.28908 -12.16669 -12.14300 -11.70358 -11.16013 -10.88631 -10.70056 -10.54335 -10.06243 -9.73943 -8.20530 -6.37595 1.34679 1.40628 1.41822 1.53414 1.71963 2.31224 2.35055 2.60209 3.08564 3.45813 3.54432 3.75478 3.86288 4.06416 4.22349 4.45442 4.64520 4.68566 4.71861 4.79481 4.86009 4.89427 5.02217 5.04807 5.09586 5.11811 5.39025 5.40342 5.58502 5.66123 5.82789 5.88869 6.07587 6.22014 6.69119 6.91218 7.14049 7.28480 7.47983 8.85924 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.033636 B = 0.005965 C = 0.005462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.241860 B = 4692.564296 C = 5125.096287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.268 3.732 3 H -0.005 1.005 4 C -0.548 4.548 5 H 0.061 0.939 6 C 0.016 3.984 7 N -0.915 5.915 8 Si 0.973 3.027 9 H -0.278 1.278 10 H -0.275 1.275 11 H -0.264 1.264 12 N -0.689 5.689 13 C 0.509 3.491 14 O -0.594 6.594 15 C -0.091 4.091 16 C -0.129 4.129 17 C -0.101 4.101 18 C -0.129 4.129 19 C 0.099 3.901 20 N -0.704 5.704 21 C 0.524 3.476 22 O -0.583 6.583 23 H 0.040 0.960 24 H 0.069 0.931 25 H 0.017 0.983 26 H 0.267 0.733 27 H 0.402 0.598 28 H 0.080 0.920 29 H 0.105 0.895 30 H 0.056 0.944 31 H 0.085 0.915 32 H 0.056 0.944 33 H 0.091 0.909 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.073 0.927 37 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.866 -6.422 -20.099 21.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.164 3.836 3 H 0.013 0.987 4 C -0.587 4.587 5 H 0.079 0.921 6 C -0.184 4.184 7 N -0.554 5.554 8 Si 0.797 3.203 9 H -0.204 1.204 10 H -0.200 1.200 11 H -0.189 1.189 12 N -0.336 5.336 13 C 0.294 3.706 14 O -0.476 6.476 15 C -0.097 4.097 16 C -0.187 4.187 17 C -0.139 4.139 18 C -0.166 4.166 19 C -0.023 4.023 20 N -0.355 5.355 21 C 0.309 3.691 22 O -0.463 6.463 23 H 0.059 0.941 24 H 0.088 0.912 25 H 0.036 0.964 26 H 0.076 0.924 27 H 0.238 0.762 28 H 0.099 0.901 29 H 0.124 0.876 30 H 0.076 0.924 31 H 0.103 0.897 32 H 0.075 0.925 33 H 0.110 0.890 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.091 0.909 37 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 5.480 -5.655 -19.502 21.032 hybrid contribution 0.597 -0.397 1.415 1.586 sum 6.077 -6.052 -18.087 20.017 Atomic orbital electron populations 1.21856 0.97554 0.99545 0.99855 1.18401 0.91585 0.91611 0.81989 0.98705 1.21492 1.32524 1.13435 0.91200 0.92102 1.25785 0.94795 0.95653 1.02142 1.70038 1.36838 1.23794 1.24697 0.85336 0.77948 0.79001 0.78001 1.20373 1.20036 1.18862 1.46367 1.63270 1.14455 1.09521 1.20660 0.77934 0.86733 0.85261 1.90612 1.53777 1.17500 1.85716 1.20971 0.94103 0.99549 0.95124 1.21840 0.98393 0.94895 1.03575 1.21606 1.03261 0.96352 0.92666 1.22014 0.93397 1.03298 0.97931 1.21796 0.98550 0.99042 0.82949 1.45336 1.14016 1.57706 1.18463 1.19737 0.86892 0.78744 0.83710 1.90783 1.83411 1.46552 1.25555 0.94086 0.91217 0.96438 0.92366 0.76166 0.90117 0.87598 0.92448 0.89652 0.92509 0.89047 0.86292 0.86411 0.90919 0.75560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.96 9.26 71.98 0.67 -6.29 16 2 C 0.27 15.32 2.56 44.25 0.11 15.43 16 3 H 0.00 -0.33 7.58 -2.39 -0.02 -0.35 16 4 C -0.55 -32.26 8.73 25.60 0.22 -32.03 16 5 H 0.06 3.52 7.74 -2.91 -0.02 3.50 16 6 C 0.02 0.93 5.30 84.65 0.45 1.38 16 7 N -0.92 -54.95 11.32 21.45 0.24 -54.71 16 8 Si 0.97 45.08 29.54 68.60 2.03 47.11 16 9 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 10 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 11 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 12 N -0.69 -33.51 4.45 -446.10 -1.98 -35.49 16 13 C 0.51 22.63 6.35 87.66 0.56 23.19 16 14 O -0.59 -30.65 15.45 -3.05 -0.05 -30.70 16 15 C -0.09 -2.79 0.60 -53.81 -0.03 -2.82 16 16 C -0.13 -3.08 8.16 71.98 0.59 -2.49 16 17 C -0.10 -2.37 4.22 30.73 0.13 -2.24 16 18 C -0.13 -1.53 5.98 30.68 0.18 -1.35 16 19 C 0.10 1.15 7.17 86.49 0.62 1.77 16 20 N -0.70 -14.47 5.44 -467.55 -2.54 -17.01 16 21 C 0.52 16.25 6.51 87.74 0.57 16.82 16 22 O -0.58 -23.53 15.55 -3.05 -0.05 -23.58 16 23 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 24 H 0.07 4.04 6.07 -2.39 -0.01 4.02 16 25 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 26 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 27 H 0.40 18.61 6.60 -92.71 -0.61 18.00 16 28 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.11 1.68 6.59 -2.39 -0.02 1.66 16 30 H 0.06 1.53 7.56 -2.39 -0.02 1.52 16 31 H 0.08 1.94 8.10 -2.39 -0.02 1.92 16 32 H 0.06 1.61 7.72 -2.39 -0.02 1.59 16 33 H 0.09 0.85 6.46 -2.38 -0.02 0.83 16 34 H 0.12 0.77 8.14 -2.38 -0.02 0.75 16 35 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.41 7.39 8.80 -92.71 -0.82 6.57 16 Total: -1.00 -78.78 298.26 1.38 -77.40 By element: Atomic # 1 Polarization: 25.95 SS G_CDS: -0.34 Total: 25.61 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: 4.07 Total: 11.37 kcal Atomic # 7 Polarization: -102.93 SS G_CDS: -4.29 Total: -107.22 kcal Atomic # 8 Polarization: -54.18 SS G_CDS: -0.09 Total: -54.27 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -78.78 1.38 -77.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336214637.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.732 kcal (2) G-P(sol) polarization free energy of solvation -78.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds