Wall clock time and date at job start Sun Mar 29 2020 23:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.47073 * 2 1 4 4 C 1.37100 * 119.99870 * 263.90195 * 3 2 1 5 5 H 1.07997 * 119.99843 * 190.50084 * 4 3 2 6 6 C 1.38958 * 119.99946 * 10.49629 * 4 3 2 7 7 N 1.31413 * 119.99903 * 19.76337 * 6 4 3 8 8 Si 1.86794 * 119.99988 * 199.75408 * 6 4 3 9 9 H 1.48498 * 109.47246 * 0.02562 * 8 6 4 10 10 H 1.48509 * 109.47087 * 120.00541 * 8 6 4 11 11 H 1.48495 * 109.47330 * 240.00196 * 8 6 4 12 12 C 1.34772 * 120.00331 * 83.90183 * 3 2 1 13 13 O 1.21295 * 119.99822 * 5.69601 * 12 3 2 14 14 C 1.50693 * 120.00331 * 185.69349 * 12 3 2 15 15 H 1.09003 * 109.67124 * 43.02851 * 14 12 3 16 16 C 1.53068 * 109.67550 * 282.53172 * 14 12 3 17 17 C 1.50179 * 109.89087 * 191.32865 * 16 14 12 18 18 O 1.21285 * 118.24315 * 197.56053 * 17 16 14 19 19 N 1.33349 * 123.50903 * 17.58197 * 17 16 14 20 20 C 1.45754 * 124.10773 * 357.77885 * 19 17 16 21 21 H 1.08994 * 109.30340 * 139.38715 * 20 19 17 22 22 C 1.53003 * 109.30083 * 258.76241 * 20 19 17 23 23 C 1.52914 * 110.48660 * 19.07017 * 20 19 17 24 24 H 1.08998 * 109.46725 * 293.27448 * 1 2 3 25 25 H 1.08993 * 109.47103 * 53.27376 * 1 2 3 26 26 H 1.08996 * 109.46889 * 173.27559 * 1 2 3 27 27 H 1.09003 * 109.46792 * 239.99935 * 2 1 3 28 28 H 1.09000 * 109.47555 * 119.99804 * 2 1 3 29 29 H 0.96995 * 120.00159 * 179.97438 * 7 6 4 30 30 H 1.08999 * 109.40022 * 71.19879 * 16 14 12 31 31 H 1.08997 * 109.40353 * 311.45764 * 16 14 12 32 32 H 0.96996 * 117.94721 * 177.75827 * 19 17 16 33 33 H 1.09005 * 109.47239 * 59.99422 * 22 20 19 34 34 H 1.08999 * 109.47227 * 179.97438 * 22 20 19 35 35 H 1.09001 * 109.47226 * 300.00139 * 22 20 19 36 36 H 1.09005 * 109.60417 * 69.00582 * 23 20 19 37 37 H 1.08999 * 109.60519 * 189.48991 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3658 1.9855 -1.1806 5 1 2.8818 2.9341 -1.1703 6 6 2.0540 1.3772 -2.3905 7 7 1.1164 0.4578 -2.4413 8 14 2.9673 1.8667 -3.9446 9 1 3.9678 2.9154 -3.6214 10 1 3.6596 0.6791 -4.5068 11 1 2.0012 2.3941 -4.9413 12 6 2.1261 2.0580 1.1605 13 8 1.9183 1.4930 2.2135 14 6 2.5049 3.5165 1.1500 15 1 1.9598 4.0314 0.3588 16 6 4.0107 3.6562 0.9134 17 6 4.4397 5.0716 1.1745 18 8 5.5087 5.4377 0.7339 19 7 3.7084 5.9470 1.8651 20 6 2.3881 5.6585 2.4109 21 1 2.3054 6.0978 3.4050 22 6 1.3203 6.2703 1.5019 23 6 2.1665 4.1484 2.5055 24 1 -0.3633 0.4061 0.9440 25 1 -0.3633 0.6145 -0.8236 26 1 -0.3633 -1.0206 -0.1203 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 0.8985 0.0335 -3.2858 30 1 4.2411 3.3925 -0.1188 31 1 4.5465 2.9857 1.5853 32 1 4.0784 6.8313 2.0137 33 1 1.4040 5.8415 0.5033 34 1 0.3315 6.0557 1.9075 35 1 1.4646 7.3493 1.4471 36 1 2.8153 3.7311 3.2757 37 1 1.1244 3.9466 2.7532 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408197023.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:52:29 Heat of formation + Delta-G solvation = -90.139296 kcal Electronic energy + Delta-G solvation = -20084.022354 eV Core-core repulsion = 17053.521649 eV Total energy + Delta-G solvation = -3030.500705 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.73067 -40.22633 -37.90830 -36.87534 -34.27676 -33.43653 -31.99371 -31.35148 -28.05883 -26.82705 -25.76987 -23.68239 -23.01770 -20.96368 -19.74487 -18.95335 -18.09386 -17.89695 -17.15865 -16.37504 -16.15592 -15.95067 -15.69062 -15.16996 -14.89403 -14.62339 -14.37785 -14.16457 -13.65580 -13.58997 -13.16577 -12.97050 -12.86412 -12.63082 -12.56055 -12.27258 -12.16837 -12.06037 -11.74877 -11.69569 -11.62478 -11.11497 -10.81837 -10.14360 -10.09978 -9.71741 -8.26622 -5.83230 1.38621 1.49880 1.56369 1.59769 2.00000 2.29051 2.33042 2.93724 3.13120 3.62494 3.76191 3.87981 3.92055 4.27968 4.31041 4.37550 4.50528 4.68184 4.74760 4.81919 4.87426 4.93918 4.97239 5.02615 5.07443 5.15326 5.25200 5.43473 5.45429 5.51191 5.80700 5.86268 5.89934 6.29841 6.50504 7.14723 7.20212 7.63541 8.03609 8.71326 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.019452 B = 0.008623 C = 0.006911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.071648 B = 3246.494825 C = 4050.672936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.131 3.869 3 N -0.447 5.447 4 C -0.352 4.352 5 H 0.110 0.890 6 C 0.002 3.998 7 N -0.875 5.875 8 Si 0.974 3.026 9 H -0.266 1.266 10 H -0.280 1.280 11 H -0.279 1.279 12 C 0.446 3.554 13 O -0.637 6.637 14 C -0.083 4.083 15 H 0.096 0.904 16 C -0.122 4.122 17 C 0.531 3.469 18 O -0.602 6.602 19 N -0.699 5.699 20 C 0.142 3.858 21 H 0.125 0.875 22 C -0.169 4.169 23 C -0.105 4.105 24 H 0.017 0.983 25 H 0.064 0.936 26 H 0.054 0.946 27 H 0.087 0.913 28 H 0.028 0.972 29 H 0.270 0.730 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.408 0.592 33 H 0.043 0.957 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.868 9.057 4.940 10.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.008 3.992 3 N -0.164 5.164 4 C -0.479 4.479 5 H 0.127 0.873 6 C -0.201 4.201 7 N -0.513 5.513 8 Si 0.799 3.201 9 H -0.190 1.190 10 H -0.206 1.206 11 H -0.205 1.205 12 C 0.236 3.764 13 O -0.526 6.526 14 C -0.104 4.104 15 H 0.114 0.886 16 C -0.162 4.162 17 C 0.319 3.681 18 O -0.485 6.485 19 N -0.350 5.350 20 C 0.038 3.962 21 H 0.142 0.858 22 C -0.227 4.227 23 C -0.143 4.143 24 H 0.036 0.964 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.105 0.895 28 H 0.047 0.953 29 H 0.081 0.919 30 H 0.117 0.883 31 H 0.112 0.888 32 H 0.245 0.755 33 H 0.062 0.938 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.646 8.586 5.014 9.964 hybrid contribution 0.356 -0.055 -0.977 1.041 sum -0.290 8.531 4.037 9.443 Atomic orbital electron populations 1.21720 0.95834 1.00970 0.99179 1.21206 0.95100 0.83530 0.99388 1.44057 1.54810 1.11498 1.05994 1.20069 1.37077 1.07806 0.82998 0.87289 1.25895 0.95831 0.96896 1.01483 1.70230 1.26479 1.27125 1.27446 0.85150 0.78481 0.78295 0.78176 1.18998 1.20568 1.20477 1.20518 0.83186 0.89494 0.83224 1.90492 1.59106 1.71150 1.31874 1.21087 0.95588 0.93265 1.00481 0.88640 1.21553 0.96103 0.93528 1.04999 1.20053 0.83450 0.88067 0.76579 1.90703 1.25142 1.79460 1.53203 1.45466 1.19125 1.16128 1.54237 1.21179 0.81127 0.94768 0.99113 0.85778 1.22332 0.99008 1.01763 0.99579 1.21691 1.03621 0.93761 0.95222 0.96360 0.91698 0.92727 0.89457 0.95348 0.91932 0.88345 0.88834 0.75535 0.93804 0.89935 0.90367 0.91266 0.89496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.39 9.53 71.98 0.69 -4.71 16 2 C 0.13 6.36 5.29 86.38 0.46 6.82 16 3 N -0.45 -21.81 2.64 -635.52 -1.68 -23.49 16 4 C -0.35 -16.94 8.74 84.04 0.73 -16.21 16 5 H 0.11 4.98 4.79 -2.91 -0.01 4.97 16 6 C 0.00 0.10 5.01 84.93 0.43 0.53 16 7 N -0.87 -42.66 8.44 21.67 0.18 -42.48 16 8 Si 0.97 38.67 29.60 68.60 2.03 40.70 16 9 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 10 H -0.28 -11.12 7.11 99.48 0.71 -10.42 16 11 H -0.28 -10.91 7.11 99.48 0.71 -10.21 16 12 C 0.45 20.50 6.79 87.66 0.59 21.09 16 13 O -0.64 -32.19 15.80 -3.08 -0.05 -32.24 16 14 C -0.08 -2.99 1.67 -11.40 -0.02 -3.01 16 15 H 0.10 3.47 5.65 -2.39 -0.01 3.46 16 16 C -0.12 -4.36 5.06 29.71 0.15 -4.21 16 17 C 0.53 17.59 7.71 87.72 0.68 18.27 16 18 O -0.60 -24.19 17.78 -3.04 -0.05 -24.25 16 19 N -0.70 -16.79 5.03 -446.65 -2.25 -19.04 16 20 C 0.14 2.88 3.82 45.10 0.17 3.05 16 21 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 22 C -0.17 -3.17 9.29 71.98 0.67 -2.51 16 23 C -0.10 -2.98 4.08 30.68 0.13 -2.86 16 24 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.06 3.16 6.57 -2.39 -0.02 3.15 16 26 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 27 H 0.09 4.41 5.82 -2.39 -0.01 4.40 16 28 H 0.03 1.39 7.54 -2.39 -0.02 1.37 16 29 H 0.27 12.51 8.31 -92.71 -0.77 11.74 16 30 H 0.10 3.85 6.14 -2.39 -0.01 3.83 16 31 H 0.09 3.41 8.09 -2.39 -0.02 3.39 16 32 H 0.41 8.05 8.80 -92.71 -0.82 7.23 16 33 H 0.04 1.04 6.55 -2.38 -0.02 1.03 16 34 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.07 2.07 8.12 -2.38 -0.02 2.05 16 37 H 0.09 2.49 8.11 -2.39 -0.02 2.47 16 Total: -1.00 -61.84 292.80 3.13 -58.71 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: 0.27 Total: 25.83 kcal Atomic # 6 Polarization: 11.58 SS G_CDS: 4.67 Total: 16.25 kcal Atomic # 7 Polarization: -81.27 SS G_CDS: -3.74 Total: -85.01 kcal Atomic # 8 Polarization: -56.38 SS G_CDS: -0.10 Total: -56.49 kcal Atomic # 14 Polarization: 38.67 SS G_CDS: 2.03 Total: 40.70 kcal Total: -61.84 3.13 -58.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408197023.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.429 kcal (2) G-P(sol) polarization free energy of solvation -61.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds