Wall clock time and date at job start Sun Mar 29 2020 23:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47385 * 2 1 4 4 C 1.50702 * 109.46686 * 120.00192 * 2 1 3 5 5 H 1.08007 * 119.99981 * 114.47702 * 4 2 1 6 6 C 1.37872 * 120.00181 * 294.48189 * 4 2 1 7 7 N 1.31507 * 120.00188 * 164.58940 * 6 4 2 8 8 Si 1.86797 * 119.99894 * 344.86064 * 6 4 2 9 9 H 1.48501 * 109.47054 * 269.72685 * 8 6 4 10 10 H 1.48506 * 109.47355 * 29.72399 * 8 6 4 11 11 H 1.48500 * 109.47516 * 149.72369 * 8 6 4 12 12 N 1.46503 * 109.46991 * 239.99842 * 2 1 3 13 13 C 1.34774 * 120.00000 * 85.00701 * 12 2 1 14 14 O 1.21281 * 119.99791 * 0.02562 * 13 12 2 15 15 C 1.50697 * 120.00282 * 179.97438 * 13 12 2 16 16 C 1.50696 * 109.47260 * 179.97438 * 15 13 12 17 17 O 1.21276 * 120.00258 * 359.97438 * 16 15 13 18 18 N 1.34783 * 119.99825 * 179.97438 * 16 15 13 19 19 C 1.46495 * 119.99925 * 179.97438 * 18 16 15 20 20 C 1.52999 * 109.47431 * 180.02562 * 19 18 16 21 21 C 1.53002 * 117.50211 * 243.62583 * 20 19 18 22 22 C 1.52995 * 117.50075 * 175.00188 * 20 19 18 23 23 H 1.08997 * 109.47143 * 293.55201 * 1 2 3 24 24 H 1.09005 * 109.46269 * 53.54439 * 1 2 3 25 25 H 1.08992 * 109.47288 * 173.53991 * 1 2 3 26 26 H 0.97004 * 120.00365 * 355.18112 * 7 6 4 27 27 H 0.97002 * 119.99993 * 265.00302 * 12 2 1 28 28 H 1.09001 * 109.47433 * 300.00072 * 15 13 12 29 29 H 1.09001 * 109.47090 * 59.99525 * 15 13 12 30 30 H 0.96994 * 119.99902 * 0.02562 * 18 16 15 31 31 H 1.09008 * 109.47564 * 300.00667 * 19 18 16 32 32 H 1.09001 * 109.47120 * 60.00121 * 19 18 16 33 33 H 1.08999 * 115.54705 * 29.33147 * 20 19 18 34 34 H 1.08998 * 117.49255 * 359.97438 * 21 20 19 35 35 H 1.08997 * 117.49759 * 145.02014 * 21 20 19 36 36 H 1.09002 * 117.50064 * 214.97980 * 22 20 19 37 37 H 1.09005 * 117.50145 * 0.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.5776 -1.6377 1.1339 6 6 1.7955 -0.1769 2.4795 7 7 1.9543 -0.9200 3.5529 8 14 1.2419 1.5993 2.6468 9 1 2.4316 2.4785 2.7762 10 1 0.4655 1.9913 1.4430 11 1 0.3884 1.7403 3.8538 12 7 2.0183 -0.6907 -1.1962 13 6 2.1472 -0.0183 -2.3571 14 8 1.8593 1.1586 -2.4114 15 6 2.6500 -0.7285 -3.5874 16 6 2.7001 0.2396 -4.7412 17 8 2.3605 1.3927 -4.5804 18 7 3.1224 -0.1760 -5.9518 19 6 3.1706 0.7650 -7.0735 20 6 3.6812 0.0440 -8.3226 21 6 5.0086 0.5172 -8.9185 22 6 3.6936 0.8288 -9.6359 23 1 -0.3633 0.4106 0.9420 24 1 -0.3632 0.6107 -0.8266 25 1 -0.3633 -1.0211 -0.1156 26 1 2.1697 -1.8615 3.4635 27 1 2.2490 -1.6319 -1.1526 28 1 3.6493 -1.1205 -3.3979 29 1 1.9778 -1.5508 -3.8325 30 1 3.3937 -1.0983 -6.0804 31 1 2.1709 1.1559 -7.2632 32 1 3.8420 1.5881 -6.8287 33 1 3.4570 -1.0214 -8.3750 34 1 5.5178 1.3425 -8.4209 35 1 5.6580 -0.2370 -9.3630 36 1 3.4780 0.2796 -10.5524 37 1 3.3384 1.8590 -9.6100 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427466212.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:28:12 Heat of formation + Delta-G solvation = -81.487950 kcal Electronic energy + Delta-G solvation = -18319.535484 eV Core-core repulsion = 15289.409930 eV Total energy + Delta-G solvation = -3030.125554 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.26854 -39.86048 -38.34756 -36.71973 -35.12326 -34.42386 -32.51316 -30.66423 -27.68477 -26.84027 -23.33583 -23.19961 -21.98974 -21.48942 -20.99705 -19.73228 -18.25801 -17.87874 -17.07482 -16.88942 -16.72675 -15.97240 -15.49271 -15.34128 -14.96528 -14.69101 -14.46183 -14.40234 -14.22105 -14.01539 -13.44974 -13.31470 -12.81166 -12.48119 -12.39368 -12.35512 -12.04484 -11.53331 -11.45170 -11.14913 -11.10147 -11.04061 -10.56063 -10.39012 -10.02457 -9.82936 -8.78202 -6.43799 1.47896 1.48709 1.66700 1.70843 1.86438 1.95428 2.42589 2.68413 2.90432 3.01377 3.62708 3.71669 3.98357 4.05214 4.15350 4.27561 4.40981 4.43635 4.53676 4.68553 4.72194 4.74703 4.80831 4.81459 5.03752 5.11575 5.20647 5.26396 5.43760 5.50771 5.67566 5.69727 6.03177 6.54702 6.60323 6.91166 7.28603 7.34427 7.57608 8.60657 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.055654 B = 0.003558 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.988538 B = 7867.695934 C = 8042.113088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.244 3.756 3 H 0.016 0.984 4 C -0.608 4.608 5 H 0.046 0.954 6 C -0.003 4.003 7 N -0.930 5.930 8 Si 1.070 2.930 9 H -0.279 1.279 10 H -0.254 1.254 11 H -0.277 1.277 12 N -0.704 5.704 13 C 0.492 3.508 14 O -0.569 6.569 15 C -0.149 4.149 16 C 0.507 3.493 17 O -0.557 6.557 18 N -0.713 5.713 19 C 0.150 3.850 20 C -0.167 4.167 21 C -0.177 4.177 22 C -0.172 4.172 23 H 0.050 0.950 24 H 0.031 0.969 25 H 0.056 0.944 26 H 0.261 0.739 27 H 0.407 0.593 28 H 0.157 0.843 29 H 0.162 0.838 30 H 0.419 0.581 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.131 0.869 34 H 0.088 0.912 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.231 -4.491 -25.461 26.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.138 3.862 3 H 0.034 0.966 4 C -0.646 4.646 5 H 0.065 0.935 6 C -0.204 4.204 7 N -0.565 5.565 8 Si 0.893 3.107 9 H -0.205 1.205 10 H -0.179 1.179 11 H -0.203 1.203 12 N -0.355 5.355 13 C 0.278 3.722 14 O -0.447 6.447 15 C -0.191 4.191 16 C 0.292 3.708 17 O -0.433 6.433 18 N -0.368 5.368 19 C 0.027 3.973 20 C -0.185 4.185 21 C -0.214 4.214 22 C -0.210 4.210 23 H 0.069 0.931 24 H 0.050 0.950 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.242 0.758 28 H 0.175 0.825 29 H 0.179 0.821 30 H 0.257 0.743 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.149 0.851 34 H 0.107 0.893 35 H 0.129 0.871 36 H 0.131 0.869 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.422 -1.651 -24.270 24.566 hybrid contribution 0.688 -2.032 -0.625 2.234 sum 4.110 -3.683 -24.895 25.500 Atomic orbital electron populations 1.22327 0.97870 1.00671 0.99776 1.18716 0.91285 0.92962 0.83187 0.96599 1.22262 1.39838 1.10342 0.92181 0.93528 1.26714 0.93920 1.07974 0.91823 1.70921 1.45945 1.08058 1.31549 0.83751 0.77820 0.72131 0.77012 1.20507 1.17868 1.20287 1.46061 1.66097 1.14277 1.09088 1.20910 0.78432 0.87344 0.85484 1.90789 1.50896 1.17873 1.85137 1.21610 1.08156 0.99456 0.89926 1.20531 0.77052 0.88604 0.84597 1.90855 1.47685 1.21105 1.83699 1.45763 1.67632 1.15074 1.08361 1.20810 1.00362 0.91638 0.84532 1.22392 1.02578 1.00680 0.92871 1.23158 0.90727 1.03754 1.03740 1.23055 1.01154 1.01316 0.95432 0.93073 0.94954 0.92450 0.93019 0.75761 0.82516 0.82054 0.74258 0.92701 0.93194 0.85128 0.89342 0.87095 0.86909 0.89028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.73 8.76 71.98 0.63 -6.10 16 2 C 0.24 11.87 2.11 44.25 0.09 11.96 16 3 H 0.02 0.87 6.21 -2.39 -0.01 0.86 16 4 C -0.61 -33.13 9.02 25.60 0.23 -32.90 16 5 H 0.05 2.63 7.96 -2.91 -0.02 2.60 16 6 C 0.00 -0.20 5.33 84.65 0.45 0.25 16 7 N -0.93 -56.30 13.69 21.44 0.29 -56.00 16 8 Si 1.07 51.73 26.17 68.60 1.80 53.53 16 9 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 10 H -0.25 -11.72 5.53 99.48 0.55 -11.17 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 12 N -0.70 -27.49 5.07 -446.10 -2.26 -29.75 16 13 C 0.49 18.72 7.79 87.66 0.68 19.40 16 14 O -0.57 -28.47 13.84 20.41 0.28 -28.19 16 15 C -0.15 -3.35 6.18 29.10 0.18 -3.17 16 16 C 0.51 14.11 7.82 87.65 0.69 14.79 16 17 O -0.56 -23.20 14.18 20.42 0.29 -22.91 16 18 N -0.71 -12.60 5.56 -463.06 -2.57 -15.17 16 19 C 0.15 2.78 5.95 86.38 0.51 3.29 16 20 C -0.17 -1.87 5.85 -10.79 -0.06 -1.93 16 21 C -0.18 -1.85 10.18 30.59 0.31 -1.53 16 22 C -0.17 -1.78 10.25 30.59 0.31 -1.47 16 23 H 0.05 2.35 5.06 -2.39 -0.01 2.34 16 24 H 0.03 1.43 8.14 -2.38 -0.02 1.41 16 25 H 0.06 2.39 8.14 -2.39 -0.02 2.38 16 26 H 0.26 15.66 8.73 -92.71 -0.81 14.85 16 27 H 0.41 13.10 8.53 -92.71 -0.79 12.31 16 28 H 0.16 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.16 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.42 3.77 8.40 -92.71 -0.78 2.99 16 31 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 32 H 0.05 1.11 7.88 -2.39 -0.02 1.09 16 33 H 0.13 0.96 8.04 -2.39 -0.02 0.94 16 34 H 0.09 1.09 8.03 -2.39 -0.02 1.07 16 35 H 0.11 0.83 8.14 -2.39 -0.02 0.82 16 36 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 Total: -1.00 -81.90 311.47 1.18 -80.72 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -0.68 Total: 15.19 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: 4.03 Total: 2.60 kcal Atomic # 7 Polarization: -96.39 SS G_CDS: -4.54 Total: -100.93 kcal Atomic # 8 Polarization: -51.67 SS G_CDS: 0.57 Total: -51.10 kcal Atomic # 14 Polarization: 51.73 SS G_CDS: 1.80 Total: 53.53 kcal Total: -81.90 1.18 -80.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427466212.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.770 kcal (2) G-P(sol) polarization free energy of solvation -81.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds