Wall clock time and date at job start Sun Mar 29 2020 23:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.45201 * 109.47218 * 2 1 4 4 C 1.34844 * 116.99829 * 180.02562 * 3 2 1 5 5 C 1.34409 * 119.99761 * 180.02562 * 4 3 2 6 6 C 1.41806 * 120.00119 * 359.97438 * 5 4 3 7 7 O 1.21741 * 119.99975 * 354.90065 * 6 5 4 8 8 N 1.34776 * 120.00152 * 174.89632 * 6 5 4 9 9 C 1.46960 * 120.59260 * 5.46761 * 8 6 5 10 10 C 1.53815 * 108.39890 * 124.75788 * 9 8 6 11 11 N 1.46965 * 108.57648 * 49.63717 * 10 9 8 12 12 C 1.36938 * 120.59592 * 124.67095 * 11 10 9 13 13 H 1.07996 * 120.00250 * 215.82356 * 12 11 10 14 14 C 1.38819 * 119.99709 * 35.81727 * 12 11 10 15 15 N 1.31621 * 120.00144 * 356.25352 * 14 12 11 16 16 Si 1.86794 * 119.99832 * 176.24621 * 14 12 11 17 17 H 1.48503 * 109.47523 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46924 * 120.00265 * 16 14 12 19 19 H 1.48498 * 109.47458 * 240.00322 * 16 14 12 20 20 C 1.46965 * 118.81283 * 304.64679 * 11 10 9 21 21 C 1.46960 * 120.59385 * 185.75310 * 8 6 5 22 22 H 1.08997 * 109.47133 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.46937 * 300.00049 * 1 2 3 24 24 H 1.09004 * 109.47407 * 60.00126 * 1 2 3 25 25 H 1.09004 * 109.47407 * 119.99874 * 2 1 3 26 26 H 1.09003 * 109.47724 * 239.99625 * 2 1 3 27 27 H 1.07997 * 119.99933 * 359.97438 * 4 3 2 28 28 H 1.07997 * 119.99976 * 179.97438 * 5 4 3 29 29 H 1.08999 * 109.61321 * 244.53915 * 9 8 6 30 30 H 1.09006 * 109.61107 * 5.05245 * 9 8 6 31 31 H 1.09000 * 109.74265 * 289.85390 * 10 9 8 32 32 H 1.08994 * 109.53706 * 169.30424 * 10 9 8 33 33 H 0.96996 * 119.99915 * 179.97438 * 15 14 12 34 34 H 1.08993 * 109.61373 * 295.48200 * 20 11 10 35 35 H 1.09001 * 109.75193 * 175.05040 * 20 11 10 36 36 H 1.08996 * 109.61258 * 354.94205 * 21 8 6 37 37 H 1.08994 * 109.61316 * 115.46080 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3508 1.5456 -0.0005 5 6 3.8645 2.7876 0.0000 6 6 3.0007 3.9122 0.0005 7 8 1.7971 3.7553 -0.0932 8 7 3.5122 5.1548 0.1048 9 6 4.9662 5.3680 0.0984 10 6 5.3054 6.3673 -1.0207 11 7 4.4192 7.5326 -0.8923 12 6 4.9388 8.7951 -0.7863 13 1 4.4545 9.5274 -0.1573 14 6 6.0882 9.1337 -1.4873 15 7 6.7201 8.2215 -2.1951 16 14 6.7379 10.8839 -1.4261 17 1 5.8531 11.7107 -0.5665 18 1 8.1124 10.8822 -0.8639 19 1 6.7652 11.4502 -2.7986 20 6 2.9652 7.3188 -0.8802 21 6 2.6260 6.3200 0.2333 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 4.0086 0.6891 -0.0005 28 1 4.9352 2.9291 -0.0001 29 1 5.2811 5.7717 1.0606 30 1 5.4740 4.4216 -0.0879 31 1 5.1533 5.8974 -1.9924 32 1 6.3435 6.6847 -0.9236 33 1 7.5230 8.4582 -2.6852 34 1 2.6465 6.9167 -1.8419 35 1 2.4555 8.2637 -0.6918 36 1 1.5878 6.0026 0.1361 37 1 2.7780 6.7900 1.2049 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493166951.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:54:41 Heat of formation + Delta-G solvation = -41.687633 kcal Electronic energy + Delta-G solvation = -19072.398477 eV Core-core repulsion = 16043.998794 eV Total energy + Delta-G solvation = -3028.399683 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.10841 -39.65607 -38.17572 -35.47687 -33.85027 -33.07148 -31.89842 -31.11968 -28.65718 -25.77825 -24.70833 -23.94777 -23.52933 -21.60826 -19.94222 -19.23233 -18.05448 -17.40341 -16.80903 -16.71740 -16.59413 -16.00744 -15.42866 -15.34147 -15.10753 -14.86335 -14.19893 -14.08092 -13.63720 -13.50665 -13.35627 -13.13681 -12.83709 -12.78324 -12.40086 -12.27159 -12.17245 -11.95505 -11.87821 -11.84213 -11.66169 -10.64729 -10.45240 -9.79259 -9.38259 -8.51379 -7.86069 -5.46413 0.58594 1.48056 1.50204 1.60448 2.31922 2.36945 2.51235 2.60273 3.27919 3.64921 3.75088 4.11996 4.12394 4.26998 4.29120 4.37664 4.42360 4.48238 4.59353 4.74140 4.77474 4.84729 4.90792 4.96641 4.99553 5.11015 5.25352 5.27348 5.35226 5.62482 5.67208 5.82050 6.43888 6.47811 6.76567 7.15086 7.48106 7.78344 8.36150 9.15906 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.056815 B = 0.004298 C = 0.004109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.708371 B = 6513.286601 C = 6812.262407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.039 3.961 3 O -0.325 6.325 4 C 0.157 3.843 5 C -0.343 4.343 6 C 0.540 3.460 7 O -0.595 6.595 8 N -0.612 5.612 9 C 0.097 3.903 10 C 0.160 3.840 11 N -0.612 5.612 12 C -0.269 4.269 13 H 0.066 0.934 14 C -0.041 4.041 15 N -0.931 5.931 16 Si 0.973 3.027 17 H -0.268 1.268 18 H -0.286 1.286 19 H -0.292 1.292 20 C 0.134 3.866 21 C 0.107 3.893 22 H 0.106 0.894 23 H 0.051 0.949 24 H 0.048 0.952 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.187 0.813 28 H 0.166 0.834 29 H 0.061 0.939 30 H 0.107 0.893 31 H -0.008 1.008 32 H 0.088 0.912 33 H 0.253 0.747 34 H 0.004 0.996 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.678 -17.232 5.875 18.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.035 4.035 3 O -0.235 6.235 4 C 0.088 3.912 5 C -0.365 4.365 6 C 0.336 3.664 7 O -0.479 6.479 8 N -0.345 5.345 9 C -0.027 4.027 10 C 0.034 3.966 11 N -0.336 5.336 12 C -0.399 4.399 13 H 0.084 0.916 14 C -0.237 4.237 15 N -0.577 5.577 16 Si 0.800 3.200 17 H -0.192 1.192 18 H -0.213 1.213 19 H -0.219 1.219 20 C 0.008 3.992 21 C -0.018 4.018 22 H 0.124 0.876 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.107 0.893 26 H 0.104 0.896 27 H 0.204 0.796 28 H 0.183 0.817 29 H 0.080 0.920 30 H 0.125 0.875 31 H 0.011 0.989 32 H 0.106 0.894 33 H 0.063 0.937 34 H 0.022 0.978 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.344 -17.138 5.739 18.847 hybrid contribution 0.559 1.088 -0.376 1.280 sum -4.785 -16.049 5.362 17.585 Atomic orbital electron populations 1.21779 0.93150 1.03754 1.02328 1.23658 0.96559 0.79735 1.03517 1.86701 1.21027 1.31254 1.84526 1.23764 0.83997 0.97985 0.85413 1.21666 1.01134 0.91126 1.22575 1.17714 0.88411 0.84001 0.76233 1.90741 1.17252 1.86359 1.53597 1.48063 1.07810 1.06126 1.72456 1.22596 0.79300 1.00809 0.99985 1.21274 0.96829 0.85888 0.92638 1.44191 1.00196 1.03239 1.85963 1.19524 1.09494 0.89388 1.21519 0.91603 1.26084 0.99863 1.01211 0.96513 1.70034 1.19741 1.33449 1.34439 0.85130 0.77750 0.80039 0.77043 1.19208 1.21258 1.21897 1.21336 0.85702 0.97267 0.94903 1.21874 0.94381 0.86551 0.98958 0.87563 0.92965 0.93235 0.89289 0.89633 0.79597 0.81700 0.92019 0.87504 0.98938 0.89397 0.93739 0.97782 0.91058 0.90313 0.91793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 10.29 71.98 0.74 -1.67 16 2 C 0.04 0.59 6.85 71.98 0.49 1.09 16 3 O -0.32 -8.72 7.95 -58.92 -0.47 -9.19 16 4 C 0.16 3.49 10.43 66.94 0.70 4.18 16 5 C -0.34 -9.95 9.21 22.28 0.21 -9.75 16 6 C 0.54 21.38 7.45 85.12 0.63 22.02 16 7 O -0.59 -27.22 14.26 17.71 0.25 -26.96 16 8 N -0.61 -24.79 2.94 -827.56 -2.43 -27.22 16 9 C 0.10 3.73 6.50 86.57 0.56 4.29 16 10 C 0.16 7.82 5.48 86.57 0.47 8.30 16 11 N -0.61 -32.02 2.97 -697.33 -2.07 -34.09 16 12 C -0.27 -14.93 9.55 84.04 0.80 -14.13 16 13 H 0.07 3.56 7.83 -2.91 -0.02 3.54 16 14 C -0.04 -2.26 5.31 84.86 0.45 -1.81 16 15 N -0.93 -53.86 10.63 21.65 0.23 -53.63 16 16 Si 0.97 44.32 29.55 68.60 2.03 46.35 16 17 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 18 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 19 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 20 C 0.13 6.21 6.67 86.42 0.58 6.79 16 21 C 0.11 4.43 6.60 86.42 0.57 5.00 16 22 H 0.11 0.95 8.14 -2.39 -0.02 0.94 16 23 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.09 0.87 8.14 -2.39 -0.02 0.86 16 26 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.19 1.86 8.01 -2.91 -0.02 1.84 16 28 H 0.17 3.90 5.78 -2.91 -0.02 3.88 16 29 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.11 3.32 5.34 -2.38 -0.01 3.31 16 31 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 32 H 0.09 4.71 5.87 -2.39 -0.01 4.70 16 33 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 34 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 35 H 0.07 3.10 7.94 -2.39 -0.02 3.08 16 36 H 0.08 3.25 6.99 -2.39 -0.02 3.24 16 37 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -74.95 303.30 4.79 -70.16 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: 1.05 Total: 10.28 kcal Atomic # 6 Polarization: 18.10 SS G_CDS: 6.21 Total: 24.31 kcal Atomic # 7 Polarization: -110.67 SS G_CDS: -4.28 Total: -114.94 kcal Atomic # 8 Polarization: -35.94 SS G_CDS: -0.22 Total: -36.15 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -74.95 4.79 -70.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493166951.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.468 kcal (2) G-P(sol) polarization free energy of solvation -74.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds