Wall clock time and date at job start Sun Mar 29 2020 23:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45196 * 109.46999 * 2 1 4 4 C 1.34831 * 116.99901 * 180.02562 * 3 2 1 5 5 C 1.34417 * 119.99969 * 179.72695 * 4 3 2 6 6 C 1.41797 * 120.00092 * 180.27619 * 5 4 3 7 7 O 1.21741 * 119.99680 * 4.23992 * 6 5 4 8 8 N 1.34773 * 120.00111 * 184.24285 * 6 5 4 9 9 C 1.46964 * 120.59451 * 4.98302 * 8 6 5 10 10 C 1.53808 * 108.40090 * 124.75638 * 9 8 6 11 11 N 1.46961 * 108.57992 * 49.63927 * 10 9 8 12 12 C 1.36930 * 120.59662 * 124.67117 * 11 10 9 13 13 H 1.08006 * 120.00233 * 211.91694 * 12 11 10 14 14 C 1.38812 * 120.00107 * 31.91066 * 12 11 10 15 15 N 1.31619 * 120.00171 * 16.28684 * 14 12 11 16 16 Si 1.86799 * 120.00020 * 196.28679 * 14 12 11 17 17 H 1.48503 * 109.47218 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47292 * 120.00116 * 16 14 12 19 19 H 1.48501 * 109.46960 * 240.00067 * 16 14 12 20 20 C 1.46973 * 118.80825 * 304.64630 * 11 10 9 21 21 C 1.46969 * 120.59408 * 185.25582 * 8 6 5 22 22 H 1.09002 * 109.47358 * 299.99835 * 1 2 3 23 23 H 1.08994 * 109.46779 * 60.00330 * 1 2 3 24 24 H 1.09000 * 109.47143 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47002 * 239.99755 * 2 1 3 26 26 H 1.09007 * 109.47074 * 119.99741 * 2 1 3 27 27 H 1.08002 * 120.00005 * 359.97438 * 4 3 2 28 28 H 1.08002 * 119.99971 * 0.26938 * 5 4 3 29 29 H 1.08998 * 109.61082 * 244.54372 * 9 8 6 30 30 H 1.09007 * 109.60848 * 5.04448 * 9 8 6 31 31 H 1.09000 * 109.73792 * 289.84437 * 10 9 8 32 32 H 1.08999 * 109.53183 * 169.30104 * 10 9 8 33 33 H 0.96999 * 120.00182 * 180.02562 * 15 14 12 34 34 H 1.09001 * 109.60828 * 295.48301 * 20 11 10 35 35 H 1.09001 * 109.74562 * 175.05971 * 20 11 10 36 36 H 1.08998 * 109.60898 * 354.95478 * 21 8 6 37 37 H 1.09001 * 109.60285 * 115.46097 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3507 1.5456 -0.0005 5 6 3.8644 2.7877 -0.0061 6 6 5.2702 2.9735 -0.0126 7 8 6.0110 2.0107 -0.0911 8 7 5.7861 4.2160 0.0682 9 6 4.9098 5.3779 0.2728 10 6 5.3965 6.1398 1.5171 11 7 6.8448 6.3577 1.3961 12 6 7.3690 7.6200 1.4782 13 1 8.2562 7.8739 0.9171 14 6 6.7599 8.5735 2.2824 15 7 5.8924 8.2032 3.2003 16 14 7.1716 10.3822 2.0620 17 1 8.1687 10.5337 0.9719 18 1 5.9381 11.1317 1.7129 19 1 7.7359 10.9190 3.3264 20 6 7.7206 5.1963 1.1858 21 6 7.2345 4.4338 -0.0528 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8901 27 1 4.0086 0.6891 -0.0005 28 1 3.2065 3.6442 -0.0058 29 1 4.9563 6.0294 -0.5998 30 1 3.8847 5.0404 0.4262 31 1 5.1881 5.5540 2.4124 32 1 4.8859 7.1009 1.5788 33 1 5.4665 8.8695 3.7621 34 1 7.6778 4.5433 2.0575 35 1 8.7459 5.5317 1.0300 36 1 7.7450 3.4727 -0.1146 37 1 7.4427 5.0196 -0.9482 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493166952.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:54:43 Heat of formation + Delta-G solvation = -46.635096 kcal Electronic energy + Delta-G solvation = -18808.129266 eV Core-core repulsion = 15779.515045 eV Total energy + Delta-G solvation = -3028.614221 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.19296 -39.88703 -38.40050 -35.55932 -33.94671 -33.11583 -32.02739 -31.23331 -28.69549 -25.81982 -24.77181 -24.10395 -23.47635 -21.68885 -19.90161 -19.21577 -18.28259 -17.39434 -17.05637 -16.91569 -16.66964 -16.13513 -15.64442 -15.44469 -15.16788 -14.94968 -14.57109 -14.11934 -13.77398 -13.44301 -13.37236 -13.27368 -12.87764 -12.67610 -12.48076 -12.27171 -12.19088 -12.02877 -11.91740 -11.84671 -11.63832 -10.87557 -10.59324 -9.93895 -9.53377 -8.60605 -7.88527 -5.41017 0.38981 1.48355 1.50476 1.61300 1.86491 2.40098 2.44357 2.54857 3.26160 3.59303 3.72731 4.06505 4.08605 4.13653 4.25969 4.30258 4.38661 4.41697 4.54221 4.70189 4.70863 4.80127 4.84244 4.96495 4.97503 5.03966 5.15926 5.24048 5.27858 5.52982 5.63672 5.68290 6.23990 6.37346 6.56596 7.11002 7.24765 7.77431 8.34311 9.16620 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.034076 B = 0.004357 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.507502 B = 6424.551747 C = 7030.654905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.041 3.959 3 O -0.331 6.331 4 C 0.170 3.830 5 C -0.329 4.329 6 C 0.563 3.437 7 O -0.609 6.609 8 N -0.603 5.603 9 C 0.096 3.904 10 C 0.168 3.832 11 N -0.609 5.609 12 C -0.269 4.269 13 H 0.068 0.932 14 C -0.044 4.044 15 N -0.933 5.933 16 Si 0.971 3.029 17 H -0.266 1.266 18 H -0.286 1.286 19 H -0.294 1.294 20 C 0.132 3.868 21 C 0.107 3.893 22 H 0.061 0.939 23 H 0.064 0.936 24 H 0.103 0.897 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.146 0.854 28 H 0.140 0.860 29 H 0.070 0.930 30 H 0.104 0.896 31 H -0.003 1.003 32 H 0.069 0.931 33 H 0.252 0.748 34 H 0.006 0.994 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.863 -13.984 -7.864 18.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.032 4.032 3 O -0.243 6.243 4 C 0.101 3.899 5 C -0.351 4.351 6 C 0.359 3.641 7 O -0.496 6.496 8 N -0.334 5.334 9 C -0.028 4.028 10 C 0.041 3.959 11 N -0.332 5.332 12 C -0.399 4.399 13 H 0.086 0.914 14 C -0.240 4.240 15 N -0.578 5.578 16 Si 0.799 3.201 17 H -0.190 1.190 18 H -0.213 1.213 19 H -0.221 1.221 20 C 0.006 3.994 21 C -0.017 4.017 22 H 0.080 0.920 23 H 0.083 0.917 24 H 0.122 0.878 25 H 0.103 0.897 26 H 0.099 0.901 27 H 0.163 0.837 28 H 0.158 0.842 29 H 0.088 0.912 30 H 0.121 0.879 31 H 0.015 0.985 32 H 0.087 0.913 33 H 0.061 0.939 34 H 0.024 0.976 35 H 0.092 0.908 36 H 0.105 0.895 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.739 -14.213 -7.794 18.910 hybrid contribution 0.345 1.021 0.456 1.170 sum -9.393 -13.192 -7.338 17.779 Atomic orbital electron populations 1.21829 0.91460 1.04363 1.03300 1.23732 0.97241 0.78704 1.03520 1.86255 1.19646 1.32827 1.85544 1.22986 0.83640 0.97755 0.85517 1.20855 0.94097 0.98563 1.21545 1.16991 0.89139 0.82172 0.75843 1.90702 1.63118 1.40260 1.55494 1.47922 1.08168 1.06702 1.70580 1.22584 0.94196 0.86661 0.99310 1.21013 0.84592 0.97890 0.92390 1.44236 1.01883 1.02400 1.84729 1.19526 1.11927 0.87644 1.20764 0.91435 1.25930 1.00108 1.02945 0.95030 1.70181 1.32697 1.33609 1.21300 0.85164 0.77605 0.80050 0.77300 1.19035 1.21282 1.22074 1.21364 0.94946 0.88724 0.94375 1.21995 0.80529 1.00442 0.98764 0.91979 0.91715 0.87818 0.89750 0.90090 0.83736 0.84204 0.91209 0.87851 0.98450 0.91276 0.93876 0.97631 0.90796 0.89454 0.91066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 10.29 71.98 0.74 -0.72 16 2 C 0.04 0.52 6.85 71.98 0.49 1.01 16 3 O -0.33 -7.02 10.17 -80.98 -0.82 -7.85 16 4 C 0.17 4.20 9.91 66.95 0.66 4.86 16 5 C -0.33 -9.95 9.03 22.28 0.20 -9.75 16 6 C 0.56 20.94 7.46 85.12 0.63 21.57 16 7 O -0.61 -25.18 15.52 -4.48 -0.07 -25.25 16 8 N -0.60 -23.20 2.94 -827.57 -2.43 -25.64 16 9 C 0.10 3.63 6.49 86.56 0.56 4.19 16 10 C 0.17 8.06 5.50 86.56 0.48 8.54 16 11 N -0.61 -31.10 2.95 -697.36 -2.05 -33.16 16 12 C -0.27 -14.69 9.54 84.03 0.80 -13.89 16 13 H 0.07 3.59 7.88 -2.91 -0.02 3.57 16 14 C -0.04 -2.43 4.90 84.86 0.42 -2.01 16 15 N -0.93 -54.60 11.41 21.65 0.25 -54.35 16 16 Si 0.97 44.12 29.58 68.60 2.03 46.15 16 17 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 18 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 19 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 20 C 0.13 5.85 6.67 86.41 0.58 6.42 16 21 C 0.11 4.11 6.60 86.41 0.57 4.68 16 22 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 23 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 24 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 25 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 27 H 0.15 3.30 7.39 -2.91 -0.02 3.27 16 28 H 0.14 3.97 5.88 -2.91 -0.02 3.95 16 29 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 30 H 0.10 3.32 5.38 -2.38 -0.01 3.31 16 31 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 32 H 0.07 3.63 6.25 -2.39 -0.01 3.62 16 33 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 34 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 35 H 0.07 3.08 7.94 -2.39 -0.02 3.06 16 36 H 0.09 3.27 6.99 -2.39 -0.02 3.25 16 37 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -68.91 306.42 4.08 -64.83 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: 1.05 Total: 10.37 kcal Atomic # 6 Polarization: 18.76 SS G_CDS: 6.13 Total: 24.90 kcal Atomic # 7 Polarization: -108.91 SS G_CDS: -4.24 Total: -113.15 kcal Atomic # 8 Polarization: -32.20 SS G_CDS: -0.89 Total: -33.10 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -68.91 4.08 -64.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493166952.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.196 kcal (2) G-P(sol) polarization free energy of solvation -68.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds