Wall clock time and date at job start Sun Mar 29 2020 23:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47304 * 2 1 4 4 C 1.50698 * 109.47346 * 120.00087 * 2 1 3 5 5 O 1.21284 * 119.99963 * 106.29508 * 4 2 1 6 6 N 1.34776 * 119.99909 * 286.30120 * 4 2 1 7 7 C 1.46498 * 119.99989 * 4.98360 * 6 4 2 8 8 C 1.46502 * 119.99985 * 184.98772 * 6 4 2 9 9 C 1.50701 * 109.46962 * 269.99693 * 8 6 4 10 10 H 1.08003 * 119.99970 * 0.02562 * 9 8 6 11 11 C 1.37873 * 119.99876 * 179.97438 * 9 8 6 12 12 N 1.31517 * 120.00084 * 179.97438 * 11 9 8 13 13 Si 1.86803 * 119.99995 * 0.02562 * 11 9 8 14 14 H 1.48505 * 109.47223 * 89.99811 * 13 11 9 15 15 H 1.48498 * 109.47052 * 209.99685 * 13 11 9 16 16 H 1.48493 * 109.47193 * 329.99803 * 13 11 9 17 17 C 1.53004 * 109.47001 * 240.00271 * 2 1 3 18 18 H 1.09002 * 110.21480 * 185.70355 * 17 2 1 19 19 C 1.54475 * 110.24726 * 63.76927 * 17 2 1 20 20 C 1.54852 * 101.66198 * 266.39106 * 19 17 2 21 21 C 1.51278 * 104.21123 * 335.19380 * 20 19 17 22 22 O 1.21279 * 124.94591 * 196.28743 * 21 20 19 23 23 N 1.34419 * 110.11405 * 16.26118 * 21 20 19 24 24 H 1.08991 * 109.47375 * 169.73119 * 1 2 3 25 25 H 1.08997 * 109.46725 * 289.73841 * 1 2 3 26 26 H 1.09006 * 109.46870 * 49.73337 * 1 2 3 27 27 H 1.08997 * 109.47584 * 267.36210 * 7 6 4 28 28 H 1.09007 * 109.47076 * 147.35928 * 7 6 4 29 29 H 1.09002 * 109.47059 * 27.36676 * 7 6 4 30 30 H 1.09000 * 109.47143 * 29.99517 * 8 6 4 31 31 H 1.09003 * 109.47099 * 149.99734 * 8 6 4 32 32 H 0.97006 * 120.00117 * 180.02562 * 12 11 9 33 33 H 1.09001 * 110.97094 * 24.53775 * 19 17 2 34 34 H 1.08998 * 110.96926 * 148.29469 * 19 17 2 35 35 H 1.09000 * 110.46859 * 216.51363 * 20 19 17 36 36 H 1.09001 * 110.49154 * 93.88326 * 20 19 17 37 37 H 0.97003 * 124.35336 * 180.42626 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.5124 -1.8202 1.1364 6 7 1.9482 -0.1125 2.4353 7 6 1.2705 1.1797 2.5661 8 6 2.5343 -0.7548 3.6144 9 6 1.5065 -1.6444 4.2649 10 1 0.5158 -1.7237 3.8422 11 6 1.8311 -2.3578 5.3992 12 7 0.9340 -3.1337 5.9673 13 14 3.5448 -2.2211 6.1300 14 1 3.5744 -1.1136 7.1189 15 1 3.8986 -3.4961 6.8041 16 1 4.5237 -1.9449 5.0481 17 6 2.0400 -0.7212 -1.2493 18 1 3.1251 -0.8172 -1.2122 19 6 1.6142 0.0460 -2.5207 20 6 0.2915 -0.6697 -2.8899 21 6 0.4276 -2.0437 -2.2718 22 8 -0.2559 -3.0042 -2.5564 23 7 1.4166 -2.0452 -1.3615 24 1 -0.3633 -1.0111 -0.1832 25 1 -0.3633 0.3471 0.9673 26 1 -0.3633 0.6643 -0.7842 27 1 1.9995 1.9840 2.4670 28 1 0.7917 1.2417 3.5434 29 1 0.5160 1.2750 1.7852 30 1 3.3939 -1.3533 3.3125 31 1 2.8543 0.0092 4.3230 32 1 1.1622 -3.6354 6.7656 33 1 1.4411 1.0995 -2.3010 34 1 2.3548 -0.0693 -3.3122 35 1 0.1891 -0.7467 -3.9723 36 1 -0.5604 -0.1414 -2.4619 37 1 1.6842 -2.8215 -0.8451 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599150727.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:23:10 Heat of formation + Delta-G solvation = -93.796447 kcal Electronic energy + Delta-G solvation = -19686.574146 eV Core-core repulsion = 16655.914855 eV Total energy + Delta-G solvation = -3030.659291 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.94232 -40.33413 -37.82519 -36.60366 -34.84256 -33.47711 -32.03600 -30.26694 -28.55561 -27.43498 -25.38604 -23.83851 -21.84855 -21.36771 -19.90386 -19.16082 -18.21573 -17.79705 -17.59655 -16.77273 -16.34852 -16.13566 -15.55697 -15.11082 -14.94039 -14.53826 -14.42744 -14.07763 -13.80312 -13.67950 -13.50228 -13.30027 -13.11482 -12.80562 -12.55910 -12.41581 -12.19636 -12.07126 -12.01346 -11.78852 -11.64241 -10.92080 -10.84682 -10.46765 -10.04782 -9.35635 -8.36335 -6.41727 1.29442 1.34574 1.44842 1.61953 1.83253 2.28923 2.36203 2.53423 2.98078 3.41836 3.55681 3.73077 3.92271 4.10328 4.20109 4.35306 4.39893 4.51917 4.67050 4.71858 4.80002 4.81866 4.85465 4.96001 4.99578 5.00412 5.18312 5.24308 5.36117 5.44697 5.62725 5.88202 6.20480 6.21743 6.60117 6.74731 7.19714 7.26499 7.46190 8.81113 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.031141 B = 0.005769 C = 0.005434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.906544 B = 4852.104445 C = 5151.538231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 H 0.153 0.847 4 C 0.496 3.504 5 O -0.593 6.593 6 N -0.607 5.607 7 C 0.063 3.937 8 C 0.224 3.776 9 C -0.535 4.535 10 H 0.022 0.978 11 C 0.006 3.994 12 N -0.949 5.949 13 Si 0.953 3.047 14 H -0.249 1.249 15 H -0.285 1.285 16 H -0.253 1.253 17 C 0.141 3.859 18 H 0.092 0.908 19 C -0.107 4.107 20 C -0.150 4.150 21 C 0.500 3.500 22 O -0.606 6.606 23 N -0.719 5.719 24 H 0.026 0.974 25 H 0.065 0.935 26 H 0.116 0.884 27 H 0.086 0.914 28 H 0.057 0.943 29 H 0.102 0.898 30 H 0.019 0.981 31 H 0.049 0.951 32 H 0.268 0.732 33 H 0.135 0.865 34 H 0.103 0.897 35 H 0.116 0.884 36 H 0.124 0.876 37 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.627 17.303 -16.197 23.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.131 4.131 3 H 0.170 0.830 4 C 0.286 3.714 5 O -0.474 6.474 6 N -0.338 5.338 7 C -0.078 4.078 8 C 0.101 3.899 9 C -0.573 4.573 10 H 0.040 0.960 11 C -0.191 4.191 12 N -0.590 5.590 13 Si 0.775 3.225 14 H -0.174 1.174 15 H -0.210 1.210 16 H -0.177 1.177 17 C 0.035 3.965 18 H 0.110 0.890 19 C -0.144 4.144 20 C -0.189 4.189 21 C 0.289 3.711 22 O -0.488 6.488 23 N -0.371 5.371 24 H 0.045 0.955 25 H 0.084 0.916 26 H 0.135 0.865 27 H 0.104 0.896 28 H 0.076 0.924 29 H 0.120 0.880 30 H 0.037 0.963 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.153 0.847 34 H 0.122 0.878 35 H 0.134 0.866 36 H 0.142 0.858 37 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 3.474 16.272 -16.285 23.282 hybrid contribution 0.363 -1.537 1.492 2.173 sum 3.837 14.735 -14.792 21.229 Atomic orbital electron populations 1.22097 0.92441 1.02130 1.04310 1.21906 0.98257 1.02371 0.90574 0.82979 1.21510 0.78323 0.85883 0.85730 1.90601 1.48273 1.21579 1.86942 1.47946 1.55859 1.22404 1.07560 1.22266 0.98328 0.83296 1.03914 1.19297 0.93200 0.92965 0.84451 1.21578 0.98468 1.26842 1.10433 0.96008 1.25942 1.02040 0.94046 0.97115 1.70076 1.36966 1.30100 1.21812 0.85637 0.79025 0.78577 0.79228 1.17355 1.21032 1.17735 1.21720 0.98268 0.81590 0.94919 0.89042 1.22797 0.95660 1.01338 0.94596 1.22574 1.01686 0.91083 1.03598 1.21951 0.78267 0.91753 0.79143 1.90695 1.49100 1.42417 1.66614 1.46670 1.35983 1.13895 1.40509 0.95455 0.91597 0.86513 0.89604 0.92422 0.88034 0.96265 0.93350 0.92350 0.84697 0.87825 0.86586 0.85811 0.76222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 7.31 71.98 0.53 -2.65 16 2 C -0.11 -2.33 1.66 -11.54 -0.02 -2.35 16 3 H 0.15 1.78 7.70 -2.39 -0.02 1.76 16 4 C 0.50 18.16 6.86 87.66 0.60 18.76 16 5 O -0.59 -27.75 14.39 -3.04 -0.04 -27.80 16 6 N -0.61 -23.01 2.86 -851.12 -2.43 -25.45 16 7 C 0.06 1.61 9.85 127.77 1.26 2.87 16 8 C 0.22 10.68 4.20 85.63 0.36 11.04 16 9 C -0.53 -31.79 9.94 25.60 0.25 -31.53 16 10 H 0.02 1.46 8.06 -2.91 -0.02 1.44 16 11 C 0.01 0.36 5.47 84.65 0.46 0.82 16 12 N -0.95 -61.26 13.96 21.45 0.30 -60.96 16 13 Si 0.95 44.63 27.47 68.60 1.88 46.51 16 14 H -0.25 -10.61 7.11 99.48 0.71 -9.90 16 15 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 16 H -0.25 -11.31 6.54 99.48 0.65 -10.66 16 17 C 0.14 2.82 2.98 45.44 0.14 2.95 16 18 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 19 C -0.11 -1.00 6.32 31.73 0.20 -0.80 16 20 C -0.15 -2.25 6.08 30.66 0.19 -2.06 16 21 C 0.50 14.68 7.06 87.90 0.62 15.30 16 22 O -0.61 -24.40 18.03 -3.03 -0.05 -24.46 16 23 N -0.72 -21.24 4.77 -439.44 -2.09 -23.33 16 24 H 0.03 0.78 6.20 -2.39 -0.01 0.76 16 25 H 0.07 1.48 5.50 -2.39 -0.01 1.47 16 26 H 0.12 1.26 6.26 -2.38 -0.01 1.25 16 27 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.06 1.67 8.09 -2.38 -0.02 1.65 16 29 H 0.10 1.95 4.18 -2.39 -0.01 1.94 16 30 H 0.02 1.00 6.55 -2.39 -0.02 0.98 16 31 H 0.05 2.08 7.50 -2.39 -0.02 2.06 16 32 H 0.27 16.04 8.31 -92.70 -0.77 15.27 16 33 H 0.13 0.24 7.87 -2.39 -0.02 0.22 16 34 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.12 1.44 6.30 -2.39 -0.02 1.42 16 37 H 0.40 14.67 7.91 -92.71 -0.73 13.93 16 Total: -1.00 -89.11 292.95 2.45 -86.67 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: 0.30 Total: 16.44 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: 4.59 Total: 12.36 kcal Atomic # 7 Polarization: -105.51 SS G_CDS: -4.23 Total: -109.73 kcal Atomic # 8 Polarization: -52.16 SS G_CDS: -0.10 Total: -52.25 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.88 Total: 46.51 kcal Total: -89.11 2.45 -86.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599150727.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.131 kcal (2) G-P(sol) polarization free energy of solvation -89.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds