Wall clock time and date at job start Sun Mar 29 2020 23:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46493 * 109.47394 * 2 1 4 4 C 1.37098 * 120.00030 * 85.42230 * 3 2 1 5 5 H 1.08001 * 120.00373 * 182.93102 * 4 3 2 6 6 C 1.38953 * 119.99658 * 2.93424 * 4 3 2 7 7 N 1.31408 * 120.00530 * 333.16487 * 6 4 3 8 8 Si 1.86803 * 119.99859 * 153.16138 * 6 4 3 9 9 H 1.48505 * 109.47254 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47143 * 120.00094 * 8 6 4 11 11 H 1.48504 * 109.47212 * 240.00224 * 8 6 4 12 12 C 1.34777 * 120.00047 * 265.42882 * 3 2 1 13 13 O 1.21287 * 120.00231 * 4.88629 * 12 3 2 14 14 C 1.50708 * 119.99657 * 184.88682 * 12 3 2 15 15 H 1.08992 * 109.46826 * 50.31738 * 14 12 3 16 16 C 1.53004 * 109.47083 * 290.31412 * 14 12 3 17 17 C 1.53002 * 109.46871 * 170.31878 * 14 12 3 18 18 H 1.08994 * 110.21828 * 60.46931 * 17 14 12 19 19 C 1.54480 * 110.24454 * 182.49912 * 17 14 12 20 20 C 1.54622 * 101.76335 * 144.41232 * 19 17 14 21 21 C 1.51280 * 104.20029 * 335.20160 * 20 19 17 22 22 O 1.21284 * 124.94257 * 196.23363 * 21 20 19 23 23 N 1.34421 * 110.11203 * 16.25092 * 21 20 19 24 24 H 1.09002 * 109.47115 * 59.99677 * 1 2 3 25 25 H 1.08997 * 109.47223 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46928 * 299.99663 * 1 2 3 27 27 H 1.09010 * 109.46941 * 240.00189 * 2 1 3 28 28 H 1.08994 * 109.47127 * 120.00679 * 2 1 3 29 29 H 0.96999 * 120.00407 * 180.02562 * 7 6 4 30 30 H 1.09006 * 109.46873 * 51.02396 * 16 14 12 31 31 H 1.08995 * 109.46970 * 171.02670 * 16 14 12 32 32 H 1.09008 * 109.47049 * 291.02665 * 16 14 12 33 33 H 1.09003 * 110.96605 * 262.53249 * 19 17 14 34 34 H 1.08997 * 110.96711 * 26.29031 * 19 17 14 35 35 H 1.09002 * 110.48664 * 216.51723 * 20 19 17 36 36 H 1.09006 * 110.59634 * 93.93521 * 20 19 17 37 37 H 0.97003 * 124.34464 * 180.38673 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1576 2.0590 1.1835 5 1 2.4723 3.0921 1.1804 6 6 1.8938 1.4167 2.3871 7 7 1.0481 0.4117 2.4241 8 14 2.7417 1.9820 3.9528 9 1 3.6406 3.1232 3.6447 10 1 1.7201 2.4090 4.9424 11 1 3.5388 0.8627 4.5158 12 6 2.3308 1.9855 -1.1635 13 8 2.1244 1.4188 -2.2158 14 6 2.9365 3.3654 -1.1569 15 1 3.7828 3.3874 -0.4704 16 6 1.8859 4.3814 -0.7042 17 6 3.4140 3.7195 -2.5667 18 1 2.5750 3.7091 -3.2623 19 6 4.0950 5.1061 -2.5680 20 6 5.2197 4.9040 -3.6096 21 6 5.4719 3.4124 -3.5988 22 8 6.4543 2.8706 -4.0595 23 7 4.4484 2.7749 -3.0046 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5139 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 0.8637 -0.0364 3.2644 30 1 1.4310 4.0433 0.2269 31 1 2.3611 5.3495 -0.5459 32 1 1.1169 4.4752 -1.4711 33 1 3.4000 5.8817 -2.8898 34 1 4.5090 5.3382 -1.5868 35 1 6.1178 5.4449 -3.3111 36 1 4.8907 5.2282 -4.5969 37 1 4.3997 1.8140 -2.8815 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599154971.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:52:49 Heat of formation + Delta-G solvation = -65.702138 kcal Electronic energy + Delta-G solvation = -19887.679376 eV Core-core repulsion = 16858.238346 eV Total energy + Delta-G solvation = -3029.441030 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.25182 -38.66254 -36.39859 -35.03954 -32.75632 -31.60773 -30.99363 -29.51969 -26.38966 -25.08232 -23.77748 -22.04534 -20.50847 -20.09943 -19.05010 -17.16805 -17.02565 -16.10829 -15.81879 -14.75131 -14.44887 -14.30633 -13.97522 -13.52084 -13.29319 -13.09454 -12.70488 -12.52592 -12.41651 -12.06219 -11.76297 -11.66753 -11.24595 -11.15661 -10.94759 -10.90075 -10.69088 -10.58706 -10.43940 -10.18306 -9.73121 -9.56195 -8.89561 -8.67324 -8.37238 -7.94568 -6.50804 -3.93022 2.89856 3.00680 3.15517 3.17444 3.76251 3.81532 3.97053 4.46082 4.65564 4.71614 4.89548 5.02588 5.29821 5.44280 5.60303 5.71684 5.79095 5.85551 5.97959 6.02645 6.23241 6.32988 6.54522 6.57290 6.71372 6.75342 6.83611 7.00036 7.20274 7.25040 7.39018 7.49470 7.64303 7.77527 8.32960 8.61169 8.96228 9.44557 9.84814 10.45221 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.024343 B = 0.006840 C = 0.006186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.941154 B = 4092.843658 C = 4525.159297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.129 3.871 3 N -0.433 5.433 4 C -0.344 4.344 5 H 0.110 0.890 6 C 0.040 3.960 7 N -0.846 5.846 8 Si 0.909 3.091 9 H -0.268 1.268 10 H -0.282 1.282 11 H -0.279 1.279 12 C 0.448 3.552 13 O -0.615 6.615 14 C -0.100 4.100 15 H 0.090 0.910 16 C -0.147 4.147 17 C 0.152 3.848 18 H 0.085 0.915 19 C -0.129 4.129 20 C -0.156 4.156 21 C 0.512 3.488 22 O -0.554 6.554 23 N -0.707 5.707 24 H 0.021 0.979 25 H 0.031 0.969 26 H 0.090 0.910 27 H 0.038 0.962 28 H 0.095 0.905 29 H 0.268 0.732 30 H 0.088 0.912 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.532 8.445 -2.506 8.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.006 3.994 3 N -0.149 5.149 4 C -0.471 4.471 5 H 0.127 0.873 6 C -0.166 4.166 7 N -0.483 5.483 8 Si 0.735 3.265 9 H -0.192 1.192 10 H -0.208 1.208 11 H -0.205 1.205 12 C 0.236 3.764 13 O -0.503 6.503 14 C -0.122 4.122 15 H 0.109 0.891 16 C -0.205 4.205 17 C 0.046 3.954 18 H 0.103 0.897 19 C -0.167 4.167 20 C -0.196 4.196 21 C 0.298 3.702 22 O -0.433 6.433 23 N -0.361 5.361 24 H 0.040 0.960 25 H 0.050 0.950 26 H 0.108 0.892 27 H 0.057 0.943 28 H 0.113 0.887 29 H 0.079 0.921 30 H 0.106 0.894 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.115 0.885 36 H 0.118 0.882 37 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 1.834 7.827 -3.080 8.609 hybrid contribution 0.142 -0.241 1.109 1.143 sum 1.976 7.587 -1.971 8.084 Atomic orbital electron populations 1.21997 0.96708 0.99394 1.01471 1.21388 0.94615 0.83041 1.00309 1.43872 1.53991 1.11868 1.05217 1.19844 1.46539 0.98025 0.82689 0.87257 1.25219 0.95442 0.96442 0.99447 1.70241 1.27805 1.23116 1.27157 0.86169 0.79763 0.78980 0.81573 1.19184 1.20813 1.20498 1.19810 0.85027 0.87762 0.83779 1.90527 1.61463 1.67387 1.30969 1.21342 0.99828 0.95267 0.95774 0.89147 1.21861 0.98078 0.97145 1.03395 1.21527 0.90568 0.87397 0.95881 0.89738 1.22731 0.97300 0.96862 0.99796 1.22335 1.00960 0.94706 1.01612 1.20880 0.82095 0.90284 0.76919 1.90709 1.30201 1.73557 1.48857 1.46380 1.20089 1.10916 1.58753 0.95982 0.94966 0.89177 0.94318 0.88730 0.92101 0.89360 0.92720 0.92907 0.89295 0.89766 0.88480 0.88195 0.74313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 9.62 37.16 0.36 -2.76 16 2 C 0.13 3.07 5.41 -4.04 -0.02 3.05 16 3 N -0.43 -10.21 2.63 -114.81 -0.30 -10.52 16 4 C -0.34 -7.97 8.17 -14.93 -0.12 -8.09 16 5 H 0.11 2.35 4.93 -52.49 -0.26 2.09 16 6 C 0.04 0.93 5.05 -17.47 -0.09 0.84 16 7 N -0.85 -20.20 8.07 55.50 0.45 -19.75 16 8 Si 0.91 18.16 29.63 -169.99 -5.04 13.12 16 9 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 10 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 11 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 12 C 0.45 9.92 6.58 -10.98 -0.07 9.84 16 13 O -0.61 -14.98 14.53 5.55 0.08 -14.90 16 14 C -0.10 -1.74 1.54 -91.76 -0.14 -1.88 16 15 H 0.09 1.59 7.63 -51.93 -0.40 1.19 16 16 C -0.15 -2.24 8.37 37.16 0.31 -1.93 16 17 C 0.15 2.31 2.52 -67.01 -0.17 2.15 16 18 H 0.08 1.35 8.03 -51.93 -0.42 0.93 16 19 C -0.13 -1.43 5.79 -25.10 -0.15 -1.58 16 20 C -0.16 -1.83 6.86 -26.75 -0.18 -2.02 16 21 C 0.51 8.61 8.43 -10.86 -0.09 8.51 16 22 O -0.55 -11.39 18.03 5.55 0.10 -11.29 16 23 N -0.71 -12.16 5.58 -52.76 -0.29 -12.46 16 24 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.09 2.18 6.16 -51.93 -0.32 1.86 16 27 H 0.04 0.93 7.36 -51.92 -0.38 0.54 16 28 H 0.09 2.34 5.87 -51.93 -0.30 2.03 16 29 H 0.27 6.10 8.31 -40.82 -0.34 5.76 16 30 H 0.09 1.55 5.52 -51.93 -0.29 1.26 16 31 H 0.05 0.66 7.64 -51.93 -0.40 0.26 16 32 H 0.05 0.78 8.12 -51.92 -0.42 0.36 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 0.89 7.90 -51.93 -0.41 0.48 16 35 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.42 8.00 7.76 -40.82 -0.32 7.68 16 LS Contribution 294.06 15.07 4.43 4.43 Total: -1.00 -28.27 294.06 -6.10 -34.37 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -5.16 Total: 10.85 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: -0.37 Total: 6.14 kcal Atomic # 7 Polarization: -42.58 SS G_CDS: -0.15 Total: -42.73 kcal Atomic # 8 Polarization: -26.37 SS G_CDS: 0.18 Total: -26.19 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -5.04 Total: 13.12 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -28.27 -6.10 -34.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599154971.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.337 kcal (2) G-P(sol) polarization free energy of solvation -28.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds