Wall clock time and date at job start Sun Mar 29 2020 23:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.47182 * 2 1 4 4 C 1.50701 * 109.46890 * 240.00485 * 2 1 3 5 5 H 1.08000 * 119.99811 * 245.62426 * 4 2 1 6 6 C 1.37874 * 120.00382 * 65.63071 * 4 2 1 7 7 N 1.31512 * 120.00320 * 197.51258 * 6 4 2 8 8 Si 1.86802 * 119.99927 * 17.50380 * 6 4 2 9 9 H 1.48501 * 109.47103 * 180.02562 * 8 6 4 10 10 H 1.48503 * 109.47069 * 60.00621 * 8 6 4 11 11 H 1.48493 * 109.47248 * 300.00497 * 8 6 4 12 12 N 1.46496 * 109.46774 * 120.00431 * 2 1 3 13 13 C 1.34774 * 120.00264 * 274.99444 * 12 2 1 14 14 O 1.21283 * 119.99743 * 0.02562 * 13 12 2 15 15 C 1.50700 * 120.00592 * 180.02562 * 13 12 2 16 16 H 1.09000 * 109.46638 * 300.00088 * 15 13 12 17 17 C 1.52998 * 109.47170 * 59.99706 * 15 13 12 18 18 C 1.52996 * 109.47261 * 180.02562 * 15 13 12 19 19 H 1.09001 * 110.21718 * 299.51926 * 18 15 13 20 20 C 1.54485 * 110.24446 * 177.50049 * 18 15 13 21 21 C 1.54627 * 101.76135 * 266.40952 * 20 18 15 22 22 C 1.51280 * 104.20150 * 335.20489 * 21 20 18 23 23 O 1.21280 * 124.94329 * 196.23331 * 22 21 20 24 24 N 1.34425 * 110.11481 * 16.24778 * 22 21 20 25 25 H 1.08997 * 109.46997 * 186.33799 * 1 2 3 26 26 H 1.08999 * 109.46724 * 306.34397 * 1 2 3 27 27 H 1.09000 * 109.46730 * 66.34128 * 1 2 3 28 28 H 0.97001 * 119.99820 * 354.87798 * 7 6 4 29 29 H 0.97001 * 119.99995 * 95.00427 * 12 2 1 30 30 H 1.09002 * 109.46362 * 60.00281 * 17 15 13 31 31 H 1.08994 * 109.47285 * 180.02562 * 17 15 13 32 32 H 1.08997 * 109.46955 * 300.00618 * 17 15 13 33 33 H 1.08998 * 110.96873 * 24.53430 * 20 18 15 34 34 H 1.08999 * 110.96925 * 148.29715 * 20 18 15 35 35 H 1.09003 * 110.48434 * 216.51876 * 21 20 18 36 36 H 1.09000 * 110.59704 * 93.94108 * 21 20 18 37 37 H 0.96998 * 124.35094 * 180.42667 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.5763 -1.6384 -1.1341 6 6 1.7977 -0.1754 -2.4794 7 7 1.9162 -0.9292 -3.5506 8 14 1.3111 1.6200 -2.6501 9 1 1.1169 1.9459 -4.0859 10 1 2.3839 2.4792 -2.0878 11 1 0.0453 1.8621 -1.9125 12 7 2.0183 -0.6907 1.1961 13 6 2.1471 -0.0185 2.3571 14 8 1.8584 1.1582 2.4117 15 6 2.6499 -0.7288 3.5875 16 1 1.9776 -1.5510 3.8324 17 6 4.0525 -1.2789 3.3213 18 6 2.7007 0.2541 4.7588 19 1 3.3767 1.0781 4.5301 20 6 3.1545 -0.4706 6.0454 21 6 1.8003 -0.8548 6.6852 22 6 0.8249 0.1567 6.1248 23 8 -0.2767 0.3845 6.5781 24 7 1.3567 0.7661 5.0511 25 1 -0.3633 -1.0214 0.1134 26 1 -0.3633 0.6090 0.8278 27 1 -0.3633 0.4124 -0.9413 28 1 2.2402 -1.8399 -3.4693 29 1 2.2490 -1.6319 1.1525 30 1 4.7248 -0.4566 3.0763 31 1 4.4160 -1.7930 4.2110 32 1 4.0158 -1.9792 2.4869 33 1 3.7395 -1.3589 5.8071 34 1 3.7158 0.2016 6.6945 35 1 1.8541 -0.7722 7.7707 36 1 1.5116 -1.8648 6.3943 37 1 0.9096 1.4556 4.5358 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599220586.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:29:03 Heat of formation + Delta-G solvation = -89.621465 kcal Electronic energy + Delta-G solvation = -19380.333239 eV Core-core repulsion = 16349.854989 eV Total energy + Delta-G solvation = -3030.478250 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.74301 -39.00882 -36.73192 -34.98238 -33.29670 -32.26885 -31.27932 -29.51012 -26.82152 -25.02228 -24.51113 -21.77912 -20.48283 -20.22748 -19.54481 -17.92158 -17.47248 -16.59855 -15.97344 -15.50699 -15.16770 -14.24107 -14.08462 -13.71462 -13.55592 -13.51652 -13.18952 -12.96822 -12.70167 -12.32345 -12.09568 -11.95251 -11.83897 -11.69258 -11.39828 -11.31295 -10.99225 -10.52167 -10.07859 -9.86051 -9.83275 -9.28432 -9.13365 -9.02571 -8.36611 -8.25279 -6.62882 -4.26646 2.59970 3.13168 3.35418 3.40901 3.43998 3.55576 3.76292 4.27896 4.35766 4.38178 4.47727 4.81852 4.92635 5.09019 5.11782 5.13089 5.30568 5.43125 5.50605 5.54862 5.70048 5.77535 5.88220 6.08529 6.34377 6.51018 6.63440 6.86407 6.91392 7.15552 7.23557 7.32952 7.60133 8.18212 8.30556 8.39653 8.64479 8.88915 9.42399 10.77866 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.034573 B = 0.005329 C = 0.004971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.685122 B = 5252.888695 C = 5631.119026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.241 3.759 3 H 0.041 0.959 4 C -0.618 4.618 5 H 0.061 0.939 6 C 0.039 3.961 7 N -0.897 5.897 8 Si 1.042 2.958 9 H -0.283 1.283 10 H -0.280 1.280 11 H -0.272 1.272 12 N -0.698 5.698 13 C 0.509 3.491 14 O -0.560 6.560 15 C -0.128 4.128 16 H 0.095 0.905 17 C -0.144 4.144 18 C 0.151 3.849 19 H 0.096 0.904 20 C -0.132 4.132 21 C -0.158 4.158 22 C 0.513 3.487 23 O -0.545 6.545 24 N -0.712 5.712 25 H 0.043 0.957 26 H 0.028 0.972 27 H 0.062 0.938 28 H 0.269 0.731 29 H 0.393 0.607 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.287 -1.923 17.002 17.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.138 3.862 3 H 0.059 0.941 4 C -0.656 4.656 5 H 0.079 0.921 6 C -0.168 4.168 7 N -0.530 5.530 8 Si 0.870 3.130 9 H -0.209 1.209 10 H -0.207 1.207 11 H -0.198 1.198 12 N -0.345 5.345 13 C 0.293 3.707 14 O -0.440 6.440 15 C -0.150 4.150 16 H 0.114 0.886 17 C -0.202 4.202 18 C 0.045 3.955 19 H 0.114 0.886 20 C -0.169 4.169 21 C -0.198 4.198 22 C 0.299 3.701 23 O -0.423 6.423 24 N -0.367 5.367 25 H 0.062 0.938 26 H 0.048 0.952 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.226 0.774 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.114 0.886 34 H 0.104 0.896 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 4.090 0.099 16.172 16.681 hybrid contribution 0.445 -1.532 0.672 1.731 sum 4.535 -1.433 16.844 17.502 Atomic orbital electron populations 1.22497 0.98907 1.00074 1.00388 1.19008 0.90529 0.94154 0.82514 0.94148 1.22058 1.41883 1.10533 0.91135 0.92104 1.25681 0.94216 1.05105 0.91749 1.70883 1.40842 1.09855 1.31403 0.84072 0.77605 0.75079 0.76251 1.20862 1.20652 1.19788 1.46285 1.64581 1.13699 1.09971 1.20340 0.78256 0.87395 0.84660 1.90595 1.51975 1.16184 1.85212 1.21824 0.99531 0.99338 0.94330 0.88643 1.21811 0.94190 1.01682 1.02512 1.21402 0.84689 0.96255 0.93170 0.88623 1.22767 0.96778 1.01751 0.95637 1.22352 0.94878 1.00008 1.02557 1.20943 0.86794 0.81880 0.80498 1.90739 1.21015 1.66896 1.63600 1.46386 1.18420 1.41313 1.30588 0.93809 0.95247 0.91920 0.92103 0.77418 0.91615 0.91279 0.91376 0.88594 0.89623 0.88201 0.87936 0.73948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.62 9.16 37.16 0.34 -3.28 16 2 C 0.24 5.66 2.14 -69.08 -0.15 5.51 16 3 H 0.04 1.03 6.23 -51.93 -0.32 0.71 16 4 C -0.62 -16.37 9.00 -34.44 -0.31 -16.68 16 5 H 0.06 1.68 7.96 -52.49 -0.42 1.26 16 6 C 0.04 1.09 5.29 -17.82 -0.09 0.99 16 7 N -0.90 -26.37 13.70 55.43 0.76 -25.61 16 8 Si 1.04 24.88 26.29 -169.99 -4.47 20.41 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.27 -6.12 5.76 56.52 0.33 -5.80 16 12 N -0.70 -13.34 4.96 -54.93 -0.27 -13.61 16 13 C 0.51 8.80 6.97 -10.99 -0.08 8.72 16 14 O -0.56 -11.39 14.31 5.55 0.08 -11.31 16 15 C -0.13 -1.49 2.49 -91.77 -0.23 -1.72 16 16 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 17 C -0.14 -1.33 8.88 37.16 0.33 -1.00 16 18 C 0.15 1.63 2.56 -67.01 -0.17 1.45 16 19 H 0.10 1.05 8.12 -51.93 -0.42 0.63 16 20 C -0.13 -0.94 6.53 -25.10 -0.16 -1.10 16 21 C -0.16 -1.39 6.86 -26.74 -0.18 -1.57 16 22 C 0.51 7.08 8.43 -10.86 -0.09 6.99 16 23 O -0.54 -9.88 18.03 5.56 0.10 -9.78 16 24 N -0.71 -9.57 5.34 -52.76 -0.28 -9.85 16 25 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 1.46 4.88 -51.93 -0.25 1.20 16 28 H 0.27 7.81 8.73 -40.82 -0.36 7.45 16 29 H 0.39 6.67 7.94 -40.82 -0.32 6.35 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.43 6.24 -51.93 -0.32 0.11 16 32 H 0.07 0.67 7.56 -51.93 -0.39 0.27 16 33 H 0.10 0.49 5.97 -51.93 -0.31 0.18 16 34 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.42 6.42 7.84 -40.82 -0.32 6.10 16 LS Contribution 299.41 15.07 4.51 4.51 Total: -1.00 -32.94 299.41 -5.65 -38.59 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -5.28 Total: 8.35 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: -0.80 Total: -1.68 kcal Atomic # 7 Polarization: -49.28 SS G_CDS: 0.20 Total: -49.07 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: 0.18 Total: -21.09 kcal Atomic # 14 Polarization: 24.88 SS G_CDS: -4.47 Total: 20.41 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -32.94 -5.65 -38.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599220586.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.034 kcal (2) G-P(sol) polarization free energy of solvation -32.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds