Wall clock time and date at job start Sun Mar 29 2020 23:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.47182 * 2 1 4 4 C 1.50701 * 109.46890 * 240.00485 * 2 1 3 5 5 H 1.08000 * 119.99811 * 245.62426 * 4 2 1 6 6 C 1.37874 * 120.00382 * 65.63071 * 4 2 1 7 7 N 1.31512 * 120.00320 * 197.51258 * 6 4 2 8 8 Si 1.86802 * 119.99927 * 17.50380 * 6 4 2 9 9 H 1.48501 * 109.47103 * 180.02562 * 8 6 4 10 10 H 1.48503 * 109.47069 * 60.00621 * 8 6 4 11 11 H 1.48493 * 109.47248 * 300.00497 * 8 6 4 12 12 N 1.46496 * 109.46774 * 120.00431 * 2 1 3 13 13 C 1.34774 * 120.00264 * 274.99444 * 12 2 1 14 14 O 1.21283 * 119.99743 * 0.02562 * 13 12 2 15 15 C 1.50700 * 120.00592 * 180.02562 * 13 12 2 16 16 H 1.09000 * 109.46638 * 300.00088 * 15 13 12 17 17 C 1.52998 * 109.47170 * 59.99706 * 15 13 12 18 18 C 1.52996 * 109.47261 * 180.02562 * 15 13 12 19 19 H 1.09001 * 110.21718 * 299.51926 * 18 15 13 20 20 C 1.54485 * 110.24446 * 177.50049 * 18 15 13 21 21 C 1.54627 * 101.76135 * 266.40952 * 20 18 15 22 22 C 1.51280 * 104.20150 * 335.20489 * 21 20 18 23 23 O 1.21280 * 124.94329 * 196.23331 * 22 21 20 24 24 N 1.34425 * 110.11481 * 16.24778 * 22 21 20 25 25 H 1.08997 * 109.46997 * 186.33799 * 1 2 3 26 26 H 1.08999 * 109.46724 * 306.34397 * 1 2 3 27 27 H 1.09000 * 109.46730 * 66.34128 * 1 2 3 28 28 H 0.97001 * 119.99820 * 354.87798 * 7 6 4 29 29 H 0.97001 * 119.99995 * 95.00427 * 12 2 1 30 30 H 1.09002 * 109.46362 * 60.00281 * 17 15 13 31 31 H 1.08994 * 109.47285 * 180.02562 * 17 15 13 32 32 H 1.08997 * 109.46955 * 300.00618 * 17 15 13 33 33 H 1.08998 * 110.96873 * 24.53430 * 20 18 15 34 34 H 1.08999 * 110.96925 * 148.29715 * 20 18 15 35 35 H 1.09003 * 110.48434 * 216.51876 * 21 20 18 36 36 H 1.09000 * 110.59704 * 93.94108 * 21 20 18 37 37 H 0.96998 * 124.35094 * 180.42667 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.5763 -1.6384 -1.1341 6 6 1.7977 -0.1754 -2.4794 7 7 1.9162 -0.9292 -3.5506 8 14 1.3111 1.6200 -2.6501 9 1 1.1169 1.9459 -4.0859 10 1 2.3839 2.4792 -2.0878 11 1 0.0453 1.8621 -1.9125 12 7 2.0183 -0.6907 1.1961 13 6 2.1471 -0.0185 2.3571 14 8 1.8584 1.1582 2.4117 15 6 2.6499 -0.7288 3.5875 16 1 1.9776 -1.5510 3.8324 17 6 4.0525 -1.2789 3.3213 18 6 2.7007 0.2541 4.7588 19 1 3.3767 1.0781 4.5301 20 6 3.1545 -0.4706 6.0454 21 6 1.8003 -0.8548 6.6852 22 6 0.8249 0.1567 6.1248 23 8 -0.2767 0.3845 6.5781 24 7 1.3567 0.7661 5.0511 25 1 -0.3633 -1.0214 0.1134 26 1 -0.3633 0.6090 0.8278 27 1 -0.3633 0.4124 -0.9413 28 1 2.2402 -1.8399 -3.4693 29 1 2.2490 -1.6319 1.1525 30 1 4.7248 -0.4566 3.0763 31 1 4.4160 -1.7930 4.2110 32 1 4.0158 -1.9792 2.4869 33 1 3.7395 -1.3589 5.8071 34 1 3.7158 0.2016 6.6945 35 1 1.8541 -0.7722 7.7707 36 1 1.5116 -1.8648 6.3943 37 1 0.9096 1.4556 4.5358 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599220586.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:29:02 Heat of formation + Delta-G solvation = -115.797882 kcal Electronic energy + Delta-G solvation = -19381.468333 eV Core-core repulsion = 16349.854989 eV Total energy + Delta-G solvation = -3031.613345 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.77282 -40.35662 -37.88944 -36.71851 -34.67725 -33.92235 -32.08318 -31.19392 -27.65035 -26.93408 -25.60576 -23.09805 -21.62498 -21.38404 -20.97461 -19.73394 -18.55796 -17.90537 -17.29281 -16.68588 -16.44484 -15.67106 -15.52091 -14.98793 -14.83264 -14.72182 -14.38439 -14.28623 -14.10064 -13.69037 -13.53464 -13.41365 -13.00867 -12.71590 -12.46158 -12.43187 -12.14058 -11.98478 -11.73877 -11.69394 -11.18506 -10.91620 -10.65070 -10.48792 -10.10435 -9.90356 -8.81485 -6.46086 1.43654 1.47470 1.57641 1.66994 1.77343 2.38832 2.45156 2.47986 2.98925 3.43082 3.59712 3.66923 3.95851 4.13516 4.24409 4.33009 4.43484 4.49825 4.67006 4.73586 4.76548 4.82935 4.91433 5.00474 5.05621 5.14440 5.22250 5.39804 5.40479 5.61587 5.64685 5.85137 5.99378 6.14764 6.51513 6.84360 7.22834 7.27193 7.44189 8.58196 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.034573 B = 0.005329 C = 0.004971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.685122 B = 5252.888695 C = 5631.119026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.245 3.755 3 H 0.022 0.978 4 C -0.611 4.611 5 H 0.042 0.958 6 C -0.004 4.004 7 N -0.927 5.927 8 Si 1.072 2.928 9 H -0.282 1.282 10 H -0.272 1.272 11 H -0.252 1.252 12 N -0.703 5.703 13 C 0.501 3.499 14 O -0.592 6.592 15 C -0.115 4.115 16 H 0.112 0.888 17 C -0.141 4.141 18 C 0.145 3.855 19 H 0.091 0.909 20 C -0.114 4.114 21 C -0.148 4.148 22 C 0.500 3.500 23 O -0.600 6.600 24 N -0.720 5.720 25 H 0.049 0.951 26 H 0.034 0.966 27 H 0.054 0.946 28 H 0.259 0.741 29 H 0.403 0.597 30 H 0.057 0.943 31 H 0.112 0.888 32 H 0.061 0.939 33 H 0.129 0.871 34 H 0.104 0.896 35 H 0.117 0.883 36 H 0.121 0.879 37 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.550 -2.682 19.203 20.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.140 3.860 3 H 0.040 0.960 4 C -0.649 4.649 5 H 0.061 0.939 6 C -0.206 4.206 7 N -0.562 5.562 8 Si 0.895 3.105 9 H -0.208 1.208 10 H -0.198 1.198 11 H -0.177 1.177 12 N -0.351 5.351 13 C 0.289 3.711 14 O -0.474 6.474 15 C -0.137 4.137 16 H 0.130 0.870 17 C -0.198 4.198 18 C 0.039 3.961 19 H 0.109 0.891 20 C -0.151 4.151 21 C -0.188 4.188 22 C 0.288 3.712 23 O -0.482 6.482 24 N -0.372 5.372 25 H 0.068 0.932 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.238 0.762 30 H 0.076 0.924 31 H 0.130 0.870 32 H 0.080 0.920 33 H 0.147 0.853 34 H 0.122 0.878 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 5.402 -0.699 18.400 19.189 hybrid contribution 0.083 -1.298 0.002 1.301 sum 5.486 -1.997 18.402 19.306 Atomic orbital electron populations 1.22381 0.98147 1.00493 1.00131 1.18668 0.90998 0.93123 0.83250 0.95972 1.22232 1.40600 1.09679 0.92429 0.93932 1.26762 0.94200 1.07712 0.91877 1.70981 1.43178 1.09719 1.32348 0.83676 0.78571 0.71693 0.76527 1.20786 1.19780 1.17728 1.46135 1.65215 1.14198 1.09543 1.21405 0.77002 0.87196 0.85503 1.90583 1.53032 1.17957 1.85835 1.21846 1.01186 0.99329 0.91335 0.86967 1.21859 0.92108 1.01477 1.04395 1.21659 0.83291 0.96374 0.94769 0.89062 1.22841 0.96163 1.02903 0.93207 1.22416 0.93896 0.98951 1.03492 1.21914 0.86789 0.82315 0.80140 1.90700 1.23667 1.68783 1.65090 1.46652 1.19475 1.40753 1.30283 0.93216 0.94675 0.92767 0.93178 0.76210 0.92402 0.86983 0.91958 0.85282 0.87768 0.86439 0.86088 0.75777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.81 9.16 71.98 0.66 -6.15 16 2 C 0.24 11.39 2.14 44.25 0.09 11.49 16 3 H 0.02 1.13 6.23 -2.39 -0.01 1.12 16 4 C -0.61 -32.56 9.00 25.60 0.23 -32.33 16 5 H 0.04 2.37 7.96 -2.91 -0.02 2.35 16 6 C 0.00 -0.25 5.29 84.65 0.45 0.20 16 7 N -0.93 -55.35 13.70 21.45 0.29 -55.06 16 8 Si 1.07 50.07 26.29 68.60 1.80 51.87 16 9 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 11 H -0.25 -10.92 5.76 99.48 0.57 -10.35 16 12 N -0.70 -26.22 4.96 -446.09 -2.21 -28.44 16 13 C 0.50 16.74 6.97 87.66 0.61 17.35 16 14 O -0.59 -23.94 14.31 -3.04 -0.04 -23.99 16 15 C -0.11 -2.34 2.49 -11.54 -0.03 -2.37 16 16 H 0.11 1.98 8.14 -2.39 -0.02 1.97 16 17 C -0.14 -2.05 8.88 71.98 0.64 -1.41 16 18 C 0.14 2.69 2.56 45.44 0.12 2.81 16 19 H 0.09 1.81 8.12 -2.39 -0.02 1.79 16 20 C -0.11 -1.05 6.53 31.65 0.21 -0.84 16 21 C -0.15 -2.01 6.86 30.59 0.21 -1.80 16 22 C 0.50 13.16 8.43 87.90 0.74 13.90 16 23 O -0.60 -21.94 18.03 -3.03 -0.05 -21.99 16 24 N -0.72 -18.63 5.34 -439.42 -2.35 -20.97 16 25 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 26 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.05 2.47 4.88 -2.39 -0.01 2.46 16 28 H 0.26 15.42 8.73 -92.71 -0.81 14.61 16 29 H 0.40 13.24 7.94 -92.71 -0.74 12.50 16 30 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.11 0.71 6.24 -2.39 -0.01 0.69 16 32 H 0.06 1.02 7.56 -2.39 -0.02 1.00 16 33 H 0.13 0.41 5.97 -2.39 -0.01 0.39 16 34 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.40 12.56 7.84 -92.71 -0.73 11.83 16 Total: -1.00 -74.46 299.41 0.83 -73.64 By element: Atomic # 1 Polarization: 24.63 SS G_CDS: -0.54 Total: 24.09 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: 3.93 Total: 0.85 kcal Atomic # 7 Polarization: -100.20 SS G_CDS: -4.27 Total: -104.47 kcal Atomic # 8 Polarization: -45.88 SS G_CDS: -0.10 Total: -45.98 kcal Atomic # 14 Polarization: 50.07 SS G_CDS: 1.80 Total: 51.87 kcal Total: -74.46 0.83 -73.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599220586.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.161 kcal (2) G-P(sol) polarization free energy of solvation -74.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds