Wall clock time and date at job start Sun Mar 29 2020 23:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21278 * 119.99998 * 2 1 4 4 N 1.34784 * 120.00014 * 179.97438 * 2 1 3 5 5 C 1.46501 * 119.99888 * 180.02562 * 4 2 1 6 6 C 1.52996 * 109.47130 * 176.68124 * 5 4 2 7 7 H 1.08997 * 109.69696 * 312.95680 * 6 5 4 8 8 C 1.53191 * 109.58547 * 192.60690 * 6 5 4 9 9 C 1.53044 * 109.31154 * 185.57586 * 8 6 5 10 10 C 1.53041 * 109.53757 * 61.36212 * 9 8 6 11 11 C 1.53188 * 109.31196 * 298.63333 * 10 9 8 12 12 N 1.46917 * 109.58868 * 73.31200 * 6 5 4 13 13 C 1.34778 * 120.63438 * 353.42269 * 12 6 5 14 14 O 1.21689 * 119.99453 * 354.58563 * 13 12 6 15 15 C 1.46372 * 120.00560 * 174.58332 * 13 12 6 16 16 H 1.08006 * 119.99812 * 349.02747 * 15 13 12 17 17 C 1.40043 * 120.00388 * 169.01425 * 15 13 12 18 18 N 1.30676 * 119.99858 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 120.00263 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.46721 * 90.00749 * 19 17 15 21 21 H 1.48502 * 109.47202 * 210.00320 * 19 17 15 22 22 H 1.48498 * 109.47096 * 330.00704 * 19 17 15 23 23 H 1.09005 * 109.47127 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47218 * 300.00218 * 1 2 3 25 25 H 1.09002 * 109.47309 * 60.00526 * 1 2 3 26 26 H 0.97000 * 120.00053 * 0.02562 * 4 2 1 27 27 H 1.09002 * 109.47108 * 56.67336 * 5 4 2 28 28 H 1.09001 * 109.46948 * 296.68129 * 5 4 2 29 29 H 1.08993 * 109.50321 * 65.61995 * 8 6 5 30 30 H 1.09004 * 109.49701 * 305.52077 * 8 6 5 31 31 H 1.08996 * 109.45689 * 301.34392 * 9 8 6 32 32 H 1.09003 * 109.45803 * 181.38448 * 9 8 6 33 33 H 1.09001 * 109.49919 * 58.58761 * 10 9 8 34 34 H 1.09005 * 109.49322 * 178.68084 * 10 9 8 35 35 H 1.09005 * 109.58648 * 174.42020 * 11 10 9 36 36 H 1.08993 * 109.58965 * 294.70439 * 11 10 9 37 37 H 0.96997 * 119.99887 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.6459 -1.1672 0.0011 6 6 4.1559 -2.6072 0.0851 7 1 3.6187 -3.1421 0.8683 8 6 5.6548 -2.6035 0.4010 9 6 6.1871 -4.0374 0.3464 10 6 5.9917 -4.6026 -1.0623 11 6 4.4966 -4.6289 -1.3947 12 7 3.9458 -3.2802 -1.2039 13 6 3.2615 -2.6717 -2.1928 14 8 2.7267 -1.5974 -1.9908 15 6 3.1614 -3.3030 -3.5096 16 1 3.7752 -4.1597 -3.7458 17 6 2.2696 -2.7964 -4.4631 18 7 1.5271 -1.7597 -4.1774 19 14 2.1424 -3.6016 -6.1439 20 1 1.1079 -4.6662 -6.1056 21 1 1.7652 -2.5810 -7.1545 22 1 3.4530 -4.1977 -6.5076 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.6959 -2.0073 0.0005 27 1 4.0089 -0.6024 0.8598 28 1 4.0095 -0.7060 -0.9171 29 1 5.8156 -2.1935 1.3980 30 1 6.1799 -1.9924 -0.3332 31 1 5.6447 -4.6536 1.0634 32 1 7.2485 -4.0404 0.5950 33 1 6.5135 -3.9726 -1.7827 34 1 6.3923 -5.6154 -1.1067 35 1 4.3580 -4.9369 -2.4311 36 1 3.9876 -5.3306 -0.7339 37 1 0.9097 -1.4086 -4.8380 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600807645.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:58:54 Heat of formation + Delta-G solvation = -52.167927 kcal Electronic energy + Delta-G solvation = -20198.391404 eV Core-core repulsion = 17169.537261 eV Total energy + Delta-G solvation = -3028.854143 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.42376 -38.03326 -35.82923 -33.95002 -32.46736 -31.65866 -31.06871 -28.99177 -26.52875 -25.35252 -23.54790 -21.68065 -20.48081 -19.59189 -18.76801 -16.63414 -15.98858 -15.50807 -15.20480 -14.99833 -14.49096 -14.19781 -13.83564 -13.74203 -13.04833 -12.95046 -12.63442 -12.24651 -11.97065 -11.91877 -11.60594 -11.54979 -11.21149 -11.13936 -11.00236 -10.71333 -10.60499 -10.47602 -10.26856 -10.16285 -9.76417 -8.94839 -8.90974 -7.94566 -7.20200 -7.10976 -6.19430 -4.66199 3.09217 3.17898 3.20022 3.66400 4.03196 4.30370 4.41632 4.53221 5.15062 5.22465 5.24118 5.59107 5.67267 5.69657 5.74970 5.78050 5.87099 5.94652 6.00549 6.08944 6.20576 6.23024 6.29173 6.40996 6.44558 6.51264 6.52926 6.71464 7.05509 7.41260 7.49528 7.55845 8.09715 8.29942 8.56782 8.99283 9.27957 9.35949 10.52391 10.70711 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.014101 B = 0.011135 C = 0.006602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.188803 B = 2514.098568 C = 4240.416708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.517 3.483 3 O -0.581 6.581 4 N -0.669 5.669 5 C 0.144 3.856 6 C 0.142 3.858 7 H 0.051 0.949 8 C -0.127 4.127 9 C -0.112 4.112 10 C -0.137 4.137 11 C 0.123 3.877 12 N -0.640 5.640 13 C 0.550 3.450 14 O -0.549 6.549 15 C -0.545 4.545 16 H 0.069 0.931 17 C 0.091 3.909 18 N -0.766 5.766 19 Si 0.902 3.098 20 H -0.273 1.273 21 H -0.280 1.280 22 H -0.266 1.266 23 H 0.067 0.933 24 H 0.077 0.923 25 H 0.087 0.913 26 H 0.392 0.608 27 H 0.040 0.960 28 H 0.087 0.913 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.093 0.907 36 H 0.040 0.960 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.957 -6.245 7.212 9.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.304 3.696 3 O -0.463 6.463 4 N -0.316 5.316 5 C 0.020 3.980 6 C 0.037 3.963 7 H 0.069 0.931 8 C -0.166 4.166 9 C -0.150 4.150 10 C -0.175 4.175 11 C -0.002 4.002 12 N -0.379 5.379 13 C 0.356 3.644 14 O -0.430 6.430 15 C -0.581 4.581 16 H 0.087 0.913 17 C -0.129 4.129 18 N -0.395 5.395 19 Si 0.728 3.272 20 H -0.199 1.199 21 H -0.206 1.206 22 H -0.190 1.190 23 H 0.086 0.914 24 H 0.096 0.904 25 H 0.106 0.894 26 H 0.226 0.774 27 H 0.058 0.942 28 H 0.105 0.895 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.111 0.889 36 H 0.058 0.942 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.941 -4.775 7.243 9.160 hybrid contribution -0.216 -1.084 -1.026 1.508 sum 2.725 -5.859 6.217 8.967 Atomic orbital electron populations 1.21697 0.93520 1.03214 1.03672 1.20256 0.89796 0.83710 0.75867 1.90594 1.70883 1.31844 1.52950 1.45645 1.06720 1.07820 1.71434 1.21220 0.81129 0.94560 1.01051 1.21059 0.94278 0.93254 0.87686 0.93142 1.21881 0.96332 0.97126 1.01239 1.21441 0.99987 0.96234 0.97354 1.21964 0.98375 1.00321 0.96870 1.21401 0.91270 0.85108 1.02378 1.48300 1.59869 1.16601 1.13178 1.18260 0.77343 0.85204 0.83600 1.90756 1.48931 1.22101 1.81203 1.20957 1.24349 1.16117 0.96706 0.91257 1.25651 0.94290 0.93804 0.99179 1.69972 1.17354 1.18136 1.34046 0.86454 0.79150 0.79374 0.82270 1.19883 1.20556 1.19026 0.91420 0.90421 0.89389 0.77388 0.94232 0.89455 0.91883 0.91514 0.92431 0.92613 0.91753 0.92131 0.88876 0.94161 0.92181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.76 10.39 36.00 0.37 -2.39 16 2 C 0.52 11.38 7.56 -10.98 -0.08 11.30 16 3 O -0.58 -15.00 17.10 5.56 0.10 -14.91 16 4 N -0.67 -14.04 3.17 -60.30 -0.19 -14.23 16 5 C 0.14 2.99 4.31 -4.04 -0.02 2.97 16 6 C 0.14 2.54 2.90 -67.61 -0.20 2.35 16 7 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 8 C -0.13 -1.90 5.34 -26.61 -0.14 -2.04 16 9 C -0.11 -1.47 5.88 -26.69 -0.16 -1.62 16 10 C -0.14 -1.95 6.08 -26.61 -0.16 -2.11 16 11 C 0.12 2.11 6.35 -3.71 -0.02 2.08 16 12 N -0.64 -13.09 2.97 -166.88 -0.50 -13.59 16 13 C 0.55 14.06 7.24 -12.99 -0.09 13.97 16 14 O -0.55 -15.28 8.77 5.20 0.05 -15.24 16 15 C -0.54 -14.27 8.78 -35.63 -0.31 -14.59 16 16 H 0.07 1.69 5.79 -52.48 -0.30 1.39 16 17 C 0.09 2.39 5.50 -17.37 -0.10 2.29 16 18 N -0.77 -21.65 11.89 55.55 0.66 -20.99 16 19 Si 0.90 19.50 29.56 -169.99 -5.02 14.47 16 20 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 21 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 22 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 23 H 0.07 1.04 7.91 -51.93 -0.41 0.62 16 24 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 25 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 26 H 0.39 7.84 7.96 -40.82 -0.33 7.52 16 27 H 0.04 0.78 8.09 -51.93 -0.42 0.36 16 28 H 0.09 2.22 6.36 -51.93 -0.33 1.89 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.09 1.72 5.35 -51.93 -0.28 1.44 16 36 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.27 7.02 8.29 -40.82 -0.34 6.68 16 LS Contribution 296.28 15.07 4.46 4.46 Total: -1.00 -32.43 296.28 -6.79 -39.22 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -5.43 Total: 8.57 kcal Atomic # 6 Polarization: 13.13 SS G_CDS: -0.91 Total: 12.22 kcal Atomic # 7 Polarization: -48.77 SS G_CDS: -0.03 Total: -48.80 kcal Atomic # 8 Polarization: -30.28 SS G_CDS: 0.14 Total: -30.14 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.02 Total: 14.47 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.43 -6.79 -39.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600807645.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.949 kcal (2) G-P(sol) polarization free energy of solvation -32.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds