Wall clock time and date at job start Sun Mar 29 2020 23:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47191 * 2 1 4 4 C 1.50693 * 109.47167 * 119.99953 * 2 1 3 5 5 H 1.08002 * 120.00289 * 120.00455 * 4 2 1 6 6 C 1.37881 * 120.00388 * 300.00116 * 4 2 1 7 7 N 1.31517 * 119.99581 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00255 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47075 * 90.00419 * 8 6 4 10 10 H 1.48505 * 109.47209 * 209.99867 * 8 6 4 11 11 H 1.48495 * 109.47469 * 330.00168 * 8 6 4 12 12 N 1.46502 * 109.47239 * 240.00292 * 2 1 3 13 13 C 1.46499 * 119.99973 * 299.99783 * 12 2 1 14 14 C 1.34775 * 120.00185 * 120.00260 * 12 2 1 15 15 O 1.21282 * 119.99789 * 359.97438 * 14 12 2 16 16 C 1.50700 * 119.99988 * 180.02562 * 14 12 2 17 17 H 1.09002 * 110.54288 * 61.15346 * 16 14 12 18 18 C 1.54628 * 110.48472 * 183.76824 * 16 14 12 19 19 C 1.54476 * 101.76724 * 93.88014 * 18 16 14 20 20 N 1.46768 * 105.47356 * 25.41305 * 19 18 16 21 21 C 1.46500 * 124.34912 * 163.25066 * 20 19 18 22 22 C 1.34424 * 111.29731 * 342.98580 * 20 19 18 23 23 O 1.21281 * 124.93585 * 180.38503 * 22 20 19 24 24 H 1.08994 * 109.47385 * 299.99561 * 1 2 3 25 25 H 1.09002 * 109.46880 * 60.00427 * 1 2 3 26 26 H 1.08999 * 109.46714 * 179.97438 * 1 2 3 27 27 H 0.96998 * 120.00306 * 180.02562 * 7 6 4 28 28 H 1.09009 * 109.47149 * 270.00154 * 13 12 2 29 29 H 1.09004 * 109.47013 * 29.99629 * 13 12 2 30 30 H 1.08994 * 109.47399 * 149.99878 * 13 12 2 31 31 H 1.09008 * 110.96597 * 211.99919 * 18 16 14 32 32 H 1.08999 * 110.97047 * 335.72036 * 18 16 14 33 33 H 1.09003 * 110.24203 * 266.41490 * 19 18 16 34 34 H 1.08999 * 110.24703 * 144.41138 * 19 18 16 35 35 H 1.09004 * 109.46781 * 179.72825 * 21 20 19 36 36 H 1.09004 * 109.47059 * 299.72385 * 21 20 19 37 37 H 1.09000 * 109.46702 * 59.72711 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.6296 -0.5459 4.4124 10 1 1.3431 -0.9493 5.1120 11 1 2.4859 -2.5662 3.7120 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0931 -1.4281 14 6 2.7933 -0.0356 -2.0833 15 8 3.0859 1.1257 -1.8915 16 6 3.2951 -0.7458 -3.3141 17 1 2.4603 -1.0779 -3.9312 18 6 4.2348 0.1760 -4.1255 19 6 5.6219 -0.2283 -3.5789 20 7 5.4650 -1.6039 -3.0919 21 6 6.5786 -2.5142 -2.8133 22 6 4.1685 -1.9193 -2.9289 23 8 3.7587 -2.9893 -2.5314 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7087 1.1613 3.4844 28 1 2.4159 -2.7377 -0.9717 29 1 0.6905 -2.3002 -0.9847 30 1 1.6239 -2.2851 -2.5002 31 1 4.1599 -0.0328 -5.1927 32 1 4.0246 1.2256 -3.9198 33 1 5.9115 0.4308 -2.7605 34 1 6.3659 -0.1924 -4.3746 35 1 6.1881 -3.4686 -2.4602 36 1 7.1553 -2.6724 -3.7247 37 1 7.2209 -2.0788 -2.0479 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614267272.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:26:37 Heat of formation + Delta-G solvation = -57.128347 kcal Electronic energy + Delta-G solvation = -19996.548645 eV Core-core repulsion = 16967.479402 eV Total energy + Delta-G solvation = -3029.069243 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.80397 -38.39889 -36.48132 -35.16205 -33.03330 -32.43111 -29.52922 -27.61590 -26.68592 -25.91163 -25.16449 -22.82239 -20.81234 -19.72947 -18.31575 -17.04447 -16.69441 -16.26994 -15.76609 -15.47449 -14.88490 -14.36867 -14.09389 -13.68922 -13.25055 -13.09492 -12.62904 -12.61119 -12.50999 -12.24228 -12.10583 -11.54630 -11.50826 -11.28013 -11.02974 -10.98114 -10.77033 -10.64247 -10.20806 -10.13340 -9.57817 -9.14313 -9.04007 -8.65225 -8.39563 -7.52358 -6.04162 -4.11311 2.58357 2.99996 3.29682 3.34996 3.36372 3.40653 3.93291 4.41464 4.43816 4.52896 4.87025 5.09704 5.21038 5.26948 5.28898 5.37044 5.52108 5.59668 5.68751 5.90004 6.03977 6.11814 6.32461 6.49086 6.70792 6.81222 6.87120 7.08692 7.10887 7.45537 7.53192 7.75310 8.04047 8.22282 8.23908 8.54675 8.83911 9.02165 9.54774 11.01241 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.024389 B = 0.007056 C = 0.006414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.787868 B = 3967.253150 C = 4364.448321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.257 3.743 3 H 0.063 0.937 4 C -0.522 4.522 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.582 5.582 13 C 0.090 3.910 14 C 0.518 3.482 15 O -0.548 6.548 16 C -0.149 4.149 17 H 0.125 0.875 18 C -0.118 4.118 19 C 0.104 3.896 20 N -0.623 5.623 21 C 0.096 3.904 22 C 0.529 3.471 23 O -0.516 6.516 24 H 0.094 0.906 25 H 0.012 0.988 26 H 0.031 0.969 27 H 0.263 0.737 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.083 0.917 32 H 0.110 0.890 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.059 0.941 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.227 -3.956 -13.407 15.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.157 3.843 3 H 0.081 0.919 4 C -0.561 4.561 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.528 5.528 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.311 5.311 13 C -0.054 4.054 14 C 0.302 3.698 15 O -0.427 6.427 16 C -0.173 4.173 17 H 0.143 0.857 18 C -0.156 4.156 19 C -0.019 4.019 20 N -0.358 5.358 21 C -0.046 4.046 22 C 0.316 3.684 23 O -0.391 6.391 24 H 0.113 0.887 25 H 0.031 0.969 26 H 0.050 0.950 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.102 0.898 32 H 0.128 0.872 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.078 0.922 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.116 -3.877 -12.889 15.225 hybrid contribution 0.357 -0.579 0.887 1.118 sum 7.473 -4.457 -12.002 14.824 Atomic orbital electron populations 1.22092 0.98081 0.99514 1.00853 1.18985 0.91001 0.94404 0.79937 0.91897 1.21328 1.31642 1.12904 0.90242 0.92299 1.24883 0.94971 0.95013 0.98921 1.69879 1.36469 1.22734 1.23702 0.86495 0.78592 0.80012 0.82330 1.20663 1.21077 1.19866 1.48291 1.47813 1.12120 1.22905 1.21843 1.01302 0.82316 0.99905 1.19533 0.79769 0.86785 0.83700 1.90633 1.59026 1.16750 1.76329 1.22153 0.99996 0.96455 0.98739 0.85735 1.22568 0.92237 1.02120 0.98714 1.22114 0.98349 0.82120 0.99348 1.48089 1.06445 1.14661 1.66631 1.21531 0.88382 0.94075 1.00612 1.20359 0.83088 0.88005 0.76978 1.90717 1.76831 1.25880 1.45683 0.88734 0.96931 0.94975 0.92728 0.91722 0.91717 0.92642 0.89824 0.87181 0.90529 0.90380 0.89900 0.92231 0.92086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 8.95 37.16 0.33 -3.29 16 2 C 0.26 6.79 2.64 -69.08 -0.18 6.61 16 3 H 0.06 1.89 6.90 -51.93 -0.36 1.53 16 4 C -0.52 -14.76 8.37 -34.44 -0.29 -15.05 16 5 H 0.06 1.69 7.65 -52.49 -0.40 1.29 16 6 C 0.06 1.80 5.30 -17.82 -0.09 1.71 16 7 N -0.89 -25.63 11.32 55.43 0.63 -25.01 16 8 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 12 N -0.58 -13.22 2.75 -175.26 -0.48 -13.71 16 13 C 0.09 1.79 7.92 59.85 0.47 2.26 16 14 C 0.52 10.89 7.11 -10.99 -0.08 10.81 16 15 O -0.55 -13.04 14.78 5.56 0.08 -12.96 16 16 C -0.15 -2.33 2.43 -91.79 -0.22 -2.55 16 17 H 0.12 1.68 7.50 -51.93 -0.39 1.29 16 18 C -0.12 -1.42 6.53 -25.10 -0.16 -1.59 16 19 C 0.10 1.20 7.35 -3.12 -0.02 1.18 16 20 N -0.62 -8.60 3.33 -180.28 -0.60 -9.20 16 21 C 0.10 1.05 11.14 59.85 0.67 1.72 16 22 C 0.53 8.78 6.94 -10.86 -0.08 8.70 16 23 O -0.52 -9.77 13.33 5.56 0.07 -9.70 16 24 H 0.09 2.53 6.07 -51.93 -0.32 2.22 16 25 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.03 0.74 6.66 -51.93 -0.35 0.39 16 27 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 28 H 0.06 1.39 6.54 -51.92 -0.34 1.05 16 29 H 0.06 1.27 6.43 -51.93 -0.33 0.94 16 30 H 0.05 0.95 5.76 -51.93 -0.30 0.66 16 31 H 0.08 0.74 8.14 -51.92 -0.42 0.32 16 32 H 0.11 1.45 6.92 -51.93 -0.36 1.10 16 33 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 1.00 7.53 -51.93 -0.39 0.61 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 296.16 15.07 4.46 4.46 Total: -1.00 -32.94 296.16 -5.72 -38.66 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -5.20 Total: 0.19 kcal Atomic # 6 Polarization: 10.17 SS G_CDS: 0.35 Total: 10.52 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: -0.46 Total: -47.91 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: 0.16 Total: -22.66 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.94 -5.72 -38.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614267272.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.469 kcal (2) G-P(sol) polarization free energy of solvation -32.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds