Wall clock time and date at job start Sun Mar 29 2020 23:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47191 * 2 1 4 4 C 1.50693 * 109.47167 * 119.99953 * 2 1 3 5 5 H 1.08002 * 120.00289 * 120.00455 * 4 2 1 6 6 C 1.37881 * 120.00388 * 300.00116 * 4 2 1 7 7 N 1.31517 * 119.99581 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00255 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47075 * 90.00419 * 8 6 4 10 10 H 1.48505 * 109.47209 * 209.99867 * 8 6 4 11 11 H 1.48495 * 109.47469 * 330.00168 * 8 6 4 12 12 N 1.46502 * 109.47239 * 240.00292 * 2 1 3 13 13 C 1.46499 * 119.99973 * 299.99783 * 12 2 1 14 14 C 1.34775 * 120.00185 * 120.00260 * 12 2 1 15 15 O 1.21282 * 119.99789 * 359.97438 * 14 12 2 16 16 C 1.50700 * 119.99988 * 180.02562 * 14 12 2 17 17 H 1.09002 * 110.54288 * 61.15346 * 16 14 12 18 18 C 1.54628 * 110.48472 * 183.76824 * 16 14 12 19 19 C 1.54476 * 101.76724 * 93.88014 * 18 16 14 20 20 N 1.46768 * 105.47356 * 25.41305 * 19 18 16 21 21 C 1.46500 * 124.34912 * 163.25066 * 20 19 18 22 22 C 1.34424 * 111.29731 * 342.98580 * 20 19 18 23 23 O 1.21281 * 124.93585 * 180.38503 * 22 20 19 24 24 H 1.08994 * 109.47385 * 299.99561 * 1 2 3 25 25 H 1.09002 * 109.46880 * 60.00427 * 1 2 3 26 26 H 1.08999 * 109.46714 * 179.97438 * 1 2 3 27 27 H 0.96998 * 120.00306 * 180.02562 * 7 6 4 28 28 H 1.09009 * 109.47149 * 270.00154 * 13 12 2 29 29 H 1.09004 * 109.47013 * 29.99629 * 13 12 2 30 30 H 1.08994 * 109.47399 * 149.99878 * 13 12 2 31 31 H 1.09008 * 110.96597 * 211.99919 * 18 16 14 32 32 H 1.08999 * 110.97047 * 335.72036 * 18 16 14 33 33 H 1.09003 * 110.24203 * 266.41490 * 19 18 16 34 34 H 1.08999 * 110.24703 * 144.41138 * 19 18 16 35 35 H 1.09004 * 109.46781 * 179.72825 * 21 20 19 36 36 H 1.09004 * 109.47059 * 299.72385 * 21 20 19 37 37 H 1.09000 * 109.46702 * 59.72711 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.6296 -0.5459 4.4124 10 1 1.3431 -0.9493 5.1120 11 1 2.4859 -2.5662 3.7120 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0931 -1.4281 14 6 2.7933 -0.0356 -2.0833 15 8 3.0859 1.1257 -1.8915 16 6 3.2951 -0.7458 -3.3141 17 1 2.4603 -1.0779 -3.9312 18 6 4.2348 0.1760 -4.1255 19 6 5.6219 -0.2283 -3.5789 20 7 5.4650 -1.6039 -3.0919 21 6 6.5786 -2.5142 -2.8133 22 6 4.1685 -1.9193 -2.9289 23 8 3.7587 -2.9893 -2.5314 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7087 1.1613 3.4844 28 1 2.4159 -2.7377 -0.9717 29 1 0.6905 -2.3002 -0.9847 30 1 1.6239 -2.2851 -2.5002 31 1 4.1599 -0.0328 -5.1927 32 1 4.0246 1.2256 -3.9198 33 1 5.9115 0.4308 -2.7605 34 1 6.3659 -0.1924 -4.3746 35 1 6.1881 -3.4686 -2.4602 36 1 7.1553 -2.6724 -3.7247 37 1 7.2209 -2.0788 -2.0479 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000614267272.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:26:37 Heat of formation + Delta-G solvation = -79.876348 kcal Electronic energy + Delta-G solvation = -19997.535072 eV Core-core repulsion = 16967.479402 eV Total energy + Delta-G solvation = -3030.055670 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.10931 -39.98756 -37.83238 -36.89408 -34.88116 -33.77484 -31.41401 -28.84487 -27.71219 -27.56550 -27.30317 -24.23056 -22.35521 -21.07883 -19.81461 -18.72013 -18.22930 -17.86985 -17.36507 -16.89067 -16.52869 -15.92782 -15.57500 -14.89314 -14.75412 -14.46773 -14.39740 -14.07956 -13.77707 -13.53182 -13.40973 -13.27074 -13.00763 -12.91256 -12.71337 -12.67406 -12.30162 -12.23766 -12.14344 -12.06836 -11.23276 -10.91623 -10.75403 -10.53691 -9.73901 -9.35609 -8.19092 -6.35350 1.24437 1.36901 1.37206 1.48480 1.68697 2.08702 2.26728 2.44755 3.07978 3.26738 3.43725 3.65143 3.97341 4.19579 4.37130 4.40239 4.49599 4.63595 4.65168 4.69733 4.79502 4.84719 4.86716 5.01083 5.01656 5.08926 5.17132 5.40951 5.52346 5.58299 5.62159 5.97266 5.99179 6.12315 6.70607 6.73607 7.03806 7.21332 7.39011 8.85172 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.024389 B = 0.007056 C = 0.006414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.787868 B = 3967.253150 C = 4364.448321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.261 3.739 3 H 0.017 0.983 4 C -0.541 4.541 5 H 0.048 0.952 6 C 0.019 3.981 7 N -0.913 5.913 8 Si 0.961 3.039 9 H -0.279 1.279 10 H -0.274 1.274 11 H -0.269 1.269 12 N -0.594 5.594 13 C 0.100 3.900 14 C 0.509 3.491 15 O -0.584 6.584 16 C -0.144 4.144 17 H 0.151 0.849 18 C -0.110 4.110 19 C 0.100 3.900 20 N -0.621 5.621 21 C 0.090 3.910 22 C 0.517 3.483 23 O -0.547 6.547 24 H 0.071 0.929 25 H 0.026 0.974 26 H 0.043 0.957 27 H 0.267 0.733 28 H 0.046 0.954 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.128 0.872 32 H 0.096 0.904 33 H 0.057 0.943 34 H 0.124 0.876 35 H 0.067 0.933 36 H 0.096 0.904 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.281 -4.918 -14.927 17.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.159 3.841 3 H 0.035 0.965 4 C -0.580 4.580 5 H 0.066 0.934 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.786 3.214 9 H -0.205 1.205 10 H -0.198 1.198 11 H -0.194 1.194 12 N -0.323 5.323 13 C -0.043 4.043 14 C 0.296 3.704 15 O -0.465 6.465 16 C -0.168 4.168 17 H 0.168 0.832 18 C -0.148 4.148 19 C -0.022 4.022 20 N -0.355 5.355 21 C -0.051 4.051 22 C 0.304 3.696 23 O -0.426 6.426 24 H 0.089 0.911 25 H 0.045 0.955 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.104 0.896 31 H 0.146 0.854 32 H 0.114 0.886 33 H 0.075 0.925 34 H 0.142 0.858 35 H 0.086 0.914 36 H 0.114 0.886 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.200 -4.839 -14.439 17.295 hybrid contribution 0.091 -0.226 1.334 1.356 sum 8.291 -5.065 -13.104 16.313 Atomic orbital electron populations 1.21878 0.96842 1.00055 1.00351 1.18602 0.91916 0.92251 0.81326 0.96526 1.21501 1.32063 1.12847 0.91552 0.93405 1.25675 0.95004 0.95662 1.01753 1.69996 1.36962 1.23664 1.24565 0.85508 0.78138 0.78926 0.78793 1.20476 1.19845 1.19387 1.48299 1.48558 1.13113 1.22369 1.21840 1.00447 0.80317 1.01661 1.20447 0.78599 0.86583 0.84741 1.90608 1.59892 1.18559 1.77457 1.22181 1.01547 0.96623 0.96452 0.83194 1.22660 0.91127 1.00398 1.00586 1.22309 0.99372 0.80458 1.00026 1.48305 1.06144 1.15676 1.65365 1.21743 0.87756 0.92886 1.02678 1.20547 0.84233 0.87741 0.77081 1.90694 1.77565 1.27086 1.47240 0.91058 0.95507 0.93764 0.92412 0.93524 0.91749 0.89620 0.85417 0.88593 0.92492 0.85800 0.91422 0.88557 0.91449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.65 8.95 71.98 0.64 -6.00 16 2 C 0.26 14.23 2.64 44.24 0.12 14.35 16 3 H 0.02 1.06 6.90 -2.39 -0.02 1.04 16 4 C -0.54 -31.33 8.37 25.60 0.21 -31.11 16 5 H 0.05 2.81 7.65 -2.91 -0.02 2.79 16 6 C 0.02 1.08 5.30 84.66 0.45 1.53 16 7 N -0.91 -53.61 11.32 21.45 0.24 -53.37 16 8 Si 0.96 44.92 29.54 68.60 2.03 46.94 16 9 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 10 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 11 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 12 N -0.59 -27.37 2.75 -826.80 -2.28 -29.65 16 13 C 0.10 3.95 7.92 127.77 1.01 4.97 16 14 C 0.51 21.53 7.11 87.66 0.62 22.15 16 15 O -0.58 -28.55 14.78 -3.03 -0.04 -28.59 16 16 C -0.14 -4.24 2.43 -11.55 -0.03 -4.27 16 17 H 0.15 3.60 7.50 -2.39 -0.02 3.59 16 18 C -0.11 -2.33 6.53 31.65 0.21 -2.12 16 19 C 0.10 2.04 7.35 86.83 0.64 2.67 16 20 N -0.62 -15.73 3.33 -842.88 -2.81 -18.54 16 21 C 0.09 1.77 11.14 127.77 1.42 3.19 16 22 C 0.52 16.39 6.94 87.89 0.61 17.00 16 23 O -0.55 -20.33 13.33 -3.03 -0.04 -20.37 16 24 H 0.07 3.91 6.07 -2.39 -0.01 3.89 16 25 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.04 2.05 6.66 -2.39 -0.02 2.03 16 27 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 28 H 0.05 2.02 6.54 -2.38 -0.02 2.01 16 29 H 0.06 2.50 6.43 -2.38 -0.02 2.49 16 30 H 0.09 2.83 5.76 -2.39 -0.01 2.82 16 31 H 0.13 1.63 8.14 -2.38 -0.02 1.61 16 32 H 0.10 2.38 6.92 -2.39 -0.02 2.37 16 33 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.07 1.55 7.53 -2.38 -0.02 1.53 16 36 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -74.05 296.16 4.08 -69.98 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: 1.07 Total: 11.24 kcal Atomic # 6 Polarization: 16.46 SS G_CDS: 5.91 Total: 22.37 kcal Atomic # 7 Polarization: -96.71 SS G_CDS: -4.84 Total: -101.56 kcal Atomic # 8 Polarization: -48.88 SS G_CDS: -0.09 Total: -48.97 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -74.05 4.08 -69.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614267272.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.901 kcal (2) G-P(sol) polarization free energy of solvation -74.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds