Wall clock time and date at job start Sun Mar 29 2020 23:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21273 * 119.99855 * 2 1 4 4 N 1.34773 * 119.99835 * 180.02562 * 2 1 3 5 5 C 1.46503 * 119.99834 * 180.02562 * 4 2 1 6 6 C 1.50699 * 109.47265 * 179.97438 * 5 4 2 7 7 O 1.21281 * 120.00127 * 0.02562 * 6 5 4 8 8 N 1.34778 * 119.99892 * 179.97438 * 6 5 4 9 9 C 1.46919 * 120.63255 * 0.02562 * 8 6 5 10 10 C 1.53195 * 108.89273 * 126.34238 * 9 8 6 11 11 C 1.53346 * 109.14901 * 54.57640 * 10 9 8 12 12 C 1.53034 * 109.61010 * 298.71225 * 11 10 9 13 13 H 1.08994 * 109.50232 * 301.42239 * 12 11 10 14 14 C 1.50707 * 109.50154 * 181.32368 * 12 11 10 15 15 H 1.08007 * 119.99368 * 0.16385 * 14 12 11 16 16 C 1.37876 * 120.00294 * 180.16159 * 14 12 11 17 17 N 1.31519 * 119.99964 * 0.02562 * 16 14 12 18 18 Si 1.86794 * 119.99777 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47227 * 90.00384 * 18 16 14 20 20 H 1.48501 * 109.46972 * 210.00014 * 18 16 14 21 21 H 1.48500 * 109.47604 * 330.00198 * 18 16 14 22 22 C 1.46933 * 120.62741 * 180.02562 * 8 6 5 23 23 H 1.08998 * 109.47204 * 269.99745 * 1 2 3 24 24 H 1.08994 * 109.47276 * 30.00513 * 1 2 3 25 25 H 1.09010 * 109.46893 * 150.00388 * 1 2 3 26 26 H 0.97003 * 120.00721 * 359.97438 * 4 2 1 27 27 H 1.09004 * 109.46970 * 59.99858 * 5 4 2 28 28 H 1.08995 * 109.47047 * 300.00146 * 5 4 2 29 29 H 1.09002 * 109.58751 * 246.20189 * 9 8 6 30 30 H 1.08996 * 109.58750 * 6.48373 * 9 8 6 31 31 H 1.08997 * 109.49914 * 174.65962 * 10 9 8 32 32 H 1.09002 * 109.49585 * 294.75599 * 10 9 8 33 33 H 1.08999 * 109.41979 * 178.67448 * 11 10 9 34 34 H 1.09001 * 109.42242 * 58.75065 * 11 10 9 35 35 H 0.96995 * 119.99653 * 179.97438 * 17 16 14 36 36 H 1.08994 * 109.58580 * 353.38021 * 22 8 6 37 37 H 1.09006 * 109.57831 * 113.65514 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1672 0.0000 6 6 4.1483 -2.5880 -0.0001 7 8 3.3602 -3.5099 -0.0011 8 7 5.4734 -2.8342 -0.0001 9 6 6.4403 -1.7281 0.0005 10 6 7.4134 -1.9205 1.1679 11 6 8.0473 -3.3134 1.0700 12 6 6.9562 -4.3821 1.1659 13 1 6.4201 -4.2713 2.1084 14 6 7.5850 -5.7503 1.1021 15 1 8.6563 -5.8481 1.0057 16 6 6.7928 -6.8769 1.1668 17 7 5.4883 -6.7576 1.2837 18 14 7.5725 -8.5725 1.0884 19 1 7.9033 -9.0292 2.4622 20 1 6.6203 -9.5267 0.4655 21 1 8.8135 -8.5097 0.2753 22 6 5.9784 -4.2140 -0.0008 23 1 -0.3633 0.0000 1.0276 24 1 -0.3633 0.8899 -0.5139 25 1 -0.3633 -0.8901 -0.5138 26 1 1.6960 -2.0073 -0.0005 27 1 4.0089 -0.6539 0.8905 28 1 4.0096 -0.6528 -0.8894 29 1 6.9929 -1.7252 -0.9391 30 1 5.9126 -0.7815 0.1169 31 1 8.1918 -1.1588 1.1221 32 1 6.8728 -1.8327 2.1104 33 1 8.7583 -3.4461 1.8855 34 1 8.5665 -3.4091 0.1164 35 1 4.9310 -7.5502 1.3289 36 1 5.1460 -4.9078 0.1172 37 1 6.4909 -4.4149 -0.9416 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700858592.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:59:07 Heat of formation + Delta-G solvation = -84.490723 kcal Electronic energy + Delta-G solvation = -19197.274146 eV Core-core repulsion = 16167.018381 eV Total energy + Delta-G solvation = -3030.255764 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.02273 -39.02822 -36.85951 -34.33230 -33.46602 -31.87102 -30.55805 -29.80729 -27.25265 -25.07507 -24.07818 -21.89226 -20.59879 -19.97124 -18.44294 -17.31157 -16.40790 -16.34110 -15.79374 -15.66342 -14.79480 -14.63709 -14.45845 -13.75894 -13.50028 -13.36320 -12.91722 -12.70153 -12.65075 -12.47696 -12.23237 -11.96897 -11.83920 -11.03844 -10.96952 -10.54267 -10.44666 -10.28423 -10.00265 -9.95246 -9.46856 -9.18107 -9.14652 -8.96461 -8.48061 -7.86617 -6.04678 -4.13397 2.59263 3.03017 3.07322 3.28141 3.35513 3.37685 3.73662 4.39123 4.72647 4.82867 5.12661 5.23467 5.25681 5.26585 5.39463 5.43618 5.48874 5.63049 5.69969 5.93908 6.10846 6.25501 6.31811 6.55398 6.60449 6.79460 6.91852 7.05789 7.16955 7.51925 7.57404 7.80794 7.92900 8.09877 8.20849 8.32744 8.65823 8.90798 9.52593 11.00727 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.030488 B = 0.005200 C = 0.004551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.172411 B = 5383.171074 C = 6151.570367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.511 3.489 3 O -0.556 6.556 4 N -0.715 5.715 5 C 0.098 3.902 6 C 0.500 3.500 7 O -0.538 6.538 8 N -0.599 5.599 9 C 0.104 3.896 10 C -0.135 4.135 11 C -0.111 4.111 12 C 0.040 3.960 13 H 0.029 0.971 14 C -0.521 4.521 15 H 0.059 0.941 16 C 0.063 3.937 17 N -0.882 5.882 18 Si 0.893 3.107 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.274 1.274 22 C 0.111 3.889 23 H 0.094 0.906 24 H 0.092 0.908 25 H 0.081 0.919 26 H 0.413 0.587 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.050 0.950 35 H 0.264 0.736 36 H 0.124 0.876 37 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.641 11.077 -2.817 12.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.298 3.702 3 O -0.435 6.435 4 N -0.370 5.370 5 C -0.030 4.030 6 C 0.286 3.714 7 O -0.415 6.415 8 N -0.332 5.332 9 C -0.019 4.019 10 C -0.173 4.173 11 C -0.149 4.149 12 C 0.021 3.979 13 H 0.047 0.953 14 C -0.560 4.560 15 H 0.077 0.923 16 C -0.140 4.140 17 N -0.519 5.519 18 Si 0.721 3.279 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.008 4.008 23 H 0.112 0.888 24 H 0.111 0.889 25 H 0.100 0.900 26 H 0.251 0.749 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.142 0.858 37 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -4.780 11.189 -2.816 12.489 hybrid contribution 0.308 -1.323 0.000 1.358 sum -4.473 9.867 -2.816 11.193 Atomic orbital electron populations 1.21855 0.91426 1.04870 1.04868 1.20804 0.90716 0.83134 0.75549 1.90704 1.70890 1.31487 1.50398 1.45893 1.06456 1.09890 1.74805 1.21159 0.81837 0.95928 1.04046 1.20303 0.83284 0.90215 0.77633 1.90697 1.54585 1.45659 1.50600 1.48476 1.04209 1.09597 1.70903 1.21722 0.91632 0.89246 0.99319 1.22004 0.98149 0.99126 0.97993 1.21685 0.99177 0.93348 1.00650 1.18964 0.91515 0.92989 0.94481 0.95291 1.21084 0.93417 0.90045 1.51428 0.92302 1.25053 0.94875 0.99338 0.94752 1.69880 1.03432 1.29561 1.49028 0.86577 0.79108 0.84022 0.78211 1.20654 1.21173 1.19879 1.22349 1.01223 0.78532 0.98741 0.88777 0.88916 0.89984 0.74868 0.88859 0.88947 0.91607 0.90947 0.91938 0.92069 0.92926 0.93103 0.92638 0.85835 0.93757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.43 10.30 36.01 0.37 -1.06 16 2 C 0.51 6.68 7.94 -10.98 -0.09 6.59 16 3 O -0.56 -9.28 17.10 5.56 0.10 -9.18 16 4 N -0.72 -9.77 5.53 -61.47 -0.34 -10.11 16 5 C 0.10 1.43 4.50 -5.19 -0.02 1.41 16 6 C 0.50 9.35 7.77 -10.99 -0.09 9.27 16 7 O -0.54 -11.99 15.08 5.56 0.08 -11.91 16 8 N -0.60 -11.43 2.97 -172.79 -0.51 -11.94 16 9 C 0.10 1.55 6.33 -3.71 -0.02 1.53 16 10 C -0.13 -2.09 6.11 -26.45 -0.16 -2.25 16 11 C -0.11 -2.14 5.11 -26.53 -0.14 -2.27 16 12 C 0.04 0.95 2.25 -91.67 -0.21 0.75 16 13 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 14 C -0.52 -13.84 8.56 -34.44 -0.29 -14.13 16 15 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 16 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 17 N -0.88 -25.18 11.39 55.43 0.63 -24.55 16 18 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 22 C 0.11 2.61 5.40 -3.73 -0.02 2.59 16 23 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 26 H 0.41 5.51 7.44 -40.82 -0.30 5.20 16 27 H 0.09 1.31 7.69 -51.93 -0.40 0.91 16 28 H 0.09 1.24 7.94 -51.93 -0.41 0.83 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.07 0.88 5.93 -51.93 -0.31 0.58 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.12 3.38 5.12 -51.93 -0.27 3.12 16 37 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 304.10 15.07 4.58 4.58 Total: -1.00 -31.99 304.10 -6.70 -38.69 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -5.46 Total: 4.50 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: -0.76 Total: 4.03 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: -0.22 Total: -46.60 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: 0.18 Total: -21.09 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.99 -6.70 -38.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700858592.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.804 kcal (2) G-P(sol) polarization free energy of solvation -31.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds