Wall clock time and date at job start Sun Mar 29 2020 23:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47102 * 2 1 4 4 C 1.47198 * 109.47240 * 119.99836 * 2 1 3 5 5 N 2.60804 * 109.47020 * 119.99758 * 2 1 3 6 6 O 1.42901 * 109.47227 * 239.99746 * 2 1 3 7 7 C 1.42904 * 113.99489 * 90.00200 * 6 2 1 8 8 C 1.53006 * 109.46701 * 180.02562 * 7 6 2 9 9 N 1.46907 * 109.46855 * 64.99786 * 8 7 6 10 10 C 1.48528 * 111.00111 * 287.39512 * 9 8 7 11 11 C 1.55099 * 103.28381 * 200.33449 * 10 9 8 12 12 C 1.54593 * 102.84490 * 37.30637 * 11 10 9 13 13 O 1.42898 * 110.30719 * 97.12142 * 12 11 10 14 14 C 1.50702 * 110.30772 * 219.18689 * 12 11 10 15 15 H 1.08002 * 120.00299 * 117.21456 * 14 12 11 16 16 C 1.37884 * 119.99942 * 296.93014 * 14 12 11 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 12 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 12 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 C 1.47903 * 110.99661 * 169.99828 * 9 8 7 23 23 H 1.09008 * 109.47220 * 300.00467 * 1 2 3 24 24 H 1.09004 * 109.46956 * 59.99934 * 1 2 3 25 25 H 1.08988 * 109.47524 * 180.02562 * 1 2 3 26 26 H 1.08991 * 109.47513 * 60.00208 * 7 6 2 27 27 H 1.08998 * 109.47005 * 299.99923 * 7 6 2 28 28 H 1.08997 * 109.47048 * 305.00191 * 8 7 6 29 29 H 1.08993 * 109.46895 * 184.99621 * 8 7 6 30 30 H 1.09001 * 110.66718 * 318.71611 * 10 9 8 31 31 H 1.09006 * 110.66736 * 81.67838 * 10 9 8 32 32 H 1.09001 * 110.71257 * 278.99719 * 11 10 9 33 33 H 1.08998 * 110.81298 * 155.66416 * 11 10 9 34 34 H 0.96691 * 114.00808 * 62.79185 * 13 12 11 35 35 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 36 36 H 1.09001 * 109.91924 * 26.49349 * 22 9 8 37 37 H 1.08997 * 110.08057 * 265.28894 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6939 1.2019 5 7 2.3993 -1.2294 2.1295 6 8 2.0063 -0.6737 -1.1667 7 6 2.2001 0.1830 -2.2940 8 6 2.7079 -0.6408 -3.4792 9 7 1.6713 -1.5968 -3.8910 10 6 1.5419 -2.6995 -2.9044 11 6 0.8481 -3.8244 -3.7161 12 6 1.4920 -3.6861 -5.1148 13 8 2.5654 -4.6180 -5.2610 14 6 0.4593 -3.9062 -6.1901 15 1 0.2138 -3.1078 -6.8747 16 6 -0.1679 -5.1289 -6.3036 17 7 0.1310 -6.1011 -5.4699 18 14 -1.4424 -5.4041 -7.6412 19 1 -1.5957 -4.1629 -8.4418 20 1 -1.0000 -6.5118 -8.5260 21 1 -2.7442 -5.7568 -7.0197 22 6 2.0254 -2.2427 -5.1735 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0275 0.0005 26 1 2.9319 0.9513 -2.0450 27 1 1.2538 0.6547 -2.5588 28 1 3.6066 -1.1834 -3.1860 29 1 2.9400 0.0242 -4.3109 30 1 2.5236 -3.0248 -2.5601 31 1 0.9228 -2.3913 -2.0619 32 1 -0.2274 -3.6551 -3.7682 33 1 1.0653 -4.8023 -3.2865 34 1 2.2920 -5.5441 -5.2107 35 1 -0.3106 -6.9612 -5.5496 36 1 3.1082 -2.2518 -5.2982 37 1 1.5609 -1.7086 -6.0024 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829998489.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:31:52 Heat of formation + Delta-G solvation = -60.742867 kcal Electronic energy + Delta-G solvation = -19280.069153 eV Core-core repulsion = 16250.843173 eV Total energy + Delta-G solvation = -3029.225980 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.08423 -38.00027 -36.34531 -34.76642 -32.03705 -32.01395 -30.41310 -28.01411 -27.36966 -24.58327 -24.24900 -22.03191 -20.21337 -19.35092 -18.30463 -17.14595 -16.93493 -15.98701 -14.96960 -14.84694 -14.50400 -14.10575 -13.77320 -13.75854 -13.37663 -12.88929 -12.86011 -12.61351 -12.39804 -12.08996 -11.99226 -11.63250 -11.58235 -11.24119 -11.16525 -10.85699 -10.77273 -10.46275 -10.38337 -10.17656 -9.86096 -9.71647 -9.08078 -8.54212 -8.02374 -7.73531 -6.14707 -4.20822 2.31537 2.58898 3.25516 3.34015 3.38423 3.49368 4.09200 4.35796 4.55930 4.64698 4.81784 5.13123 5.17994 5.33715 5.35736 5.44480 5.55993 5.75795 5.84535 5.97309 6.05062 6.22629 6.24765 6.40852 6.49255 6.69834 6.96451 7.01252 7.18893 7.35200 7.37933 7.61123 7.74324 7.76877 7.90486 8.22590 8.81087 9.46152 9.56996 10.92918 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.030233 B = 0.005004 C = 0.004868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.907430 B = 5593.689452 C = 5750.836856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.184 3.816 3 H 0.101 0.899 4 C 0.214 3.786 5 N -0.417 5.417 6 O -0.363 6.363 7 C 0.069 3.931 8 C 0.045 3.955 9 N -0.512 5.512 10 C 0.043 3.957 11 C -0.120 4.120 12 C 0.242 3.758 13 O -0.596 6.596 14 C -0.527 4.527 15 H 0.062 0.938 16 C 0.067 3.933 17 N -0.899 5.899 18 Si 0.899 3.101 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.283 1.283 22 C 0.053 3.947 23 H 0.070 0.930 24 H 0.082 0.918 25 H 0.075 0.925 26 H 0.053 0.947 27 H 0.066 0.934 28 H 0.040 0.960 29 H 0.085 0.915 30 H 0.030 0.970 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.382 0.618 35 H 0.265 0.735 36 H 0.034 0.966 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.113 13.202 6.991 14.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.123 3.877 3 H 0.119 0.881 4 C -0.105 4.105 5 N -0.095 5.095 6 O -0.281 6.281 7 C -0.007 4.007 8 C -0.084 4.084 9 N -0.237 5.237 10 C -0.084 4.084 11 C -0.159 4.159 12 C 0.202 3.798 13 O -0.405 6.405 14 C -0.565 4.565 15 H 0.080 0.920 16 C -0.134 4.134 17 N -0.540 5.540 18 Si 0.727 3.273 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.209 1.209 22 C -0.074 4.074 23 H 0.089 0.911 24 H 0.101 0.899 25 H 0.094 0.906 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.058 0.942 29 H 0.104 0.896 30 H 0.048 0.952 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.233 0.767 35 H 0.075 0.925 36 H 0.052 0.948 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.549 12.879 8.276 15.387 hybrid contribution -0.438 -0.783 -0.923 1.287 sum 1.111 12.096 7.353 14.199 Atomic orbital electron populations 1.22244 0.92456 1.04615 1.03506 1.19186 0.94702 0.94124 0.79671 0.88100 1.28980 0.93193 0.93832 0.94480 1.81192 1.08322 1.07651 1.12331 1.88172 1.86441 1.34648 1.18836 1.22757 1.00350 0.92442 0.85192 1.22289 0.94107 0.96583 0.95412 1.64818 1.40604 1.14673 1.03601 1.23321 0.98964 0.91326 0.94832 1.23026 0.99968 0.95974 0.96917 1.19371 0.84188 0.84290 0.91972 1.86084 1.37529 1.20728 1.96189 1.21748 1.21240 0.98178 1.15341 0.91993 1.25016 0.96592 0.95933 0.95856 1.69677 1.43579 1.03791 1.36914 0.86429 0.81013 0.78204 0.81673 1.19676 1.20992 1.20949 1.22834 0.97811 0.95635 0.91119 0.91079 0.89937 0.90599 0.92867 0.91552 0.94173 0.89627 0.95167 0.90670 0.91603 0.91950 0.76703 0.92487 0.94785 0.90416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.35 9.48 37.16 0.35 -1.00 16 2 C 0.18 1.67 3.17 -29.52 -0.09 1.58 16 3 H 0.10 0.57 7.79 -51.93 -0.40 0.17 16 4 C 0.21 2.58 15.03 -20.76 -0.31 2.26 16 5 N -0.42 -6.13 18.54 42.16 0.78 -5.35 16 6 O -0.36 -4.50 7.31 -35.23 -0.26 -4.76 16 7 C 0.07 0.75 6.06 37.16 0.23 0.97 16 8 C 0.05 0.64 5.27 -3.82 -0.02 0.62 16 9 N -0.51 -9.53 5.25 -230.34 -1.21 -10.74 16 10 C 0.04 0.86 5.33 -1.81 -0.01 0.85 16 11 C -0.12 -2.85 5.43 -24.78 -0.13 -2.98 16 12 C 0.24 6.07 0.99 -90.42 -0.09 5.98 16 13 O -0.60 -15.84 12.92 -35.23 -0.46 -16.30 16 14 C -0.53 -14.23 8.11 -34.44 -0.28 -14.51 16 15 H 0.06 1.66 7.34 -52.49 -0.39 1.28 16 16 C 0.07 1.80 5.26 -17.82 -0.09 1.71 16 17 N -0.90 -24.38 10.88 55.43 0.60 -23.78 16 18 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 19 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 C 0.05 1.15 6.13 -2.76 -0.02 1.14 16 23 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 24 H 0.08 0.60 7.87 -51.93 -0.41 0.19 16 25 H 0.07 0.74 8.14 -51.94 -0.42 0.32 16 26 H 0.05 0.42 8.08 -51.93 -0.42 0.00 16 27 H 0.07 0.66 7.87 -51.93 -0.41 0.25 16 28 H 0.04 0.62 7.83 -51.93 -0.41 0.21 16 29 H 0.09 1.07 8.08 -51.93 -0.42 0.65 16 30 H 0.03 0.63 7.81 -51.93 -0.41 0.22 16 31 H 0.08 1.40 6.79 -51.93 -0.35 1.05 16 32 H 0.07 1.64 7.86 -51.93 -0.41 1.23 16 33 H 0.06 1.56 8.02 -51.93 -0.42 1.14 16 34 H 0.38 10.34 7.17 45.56 0.33 10.66 16 35 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 36 H 0.03 0.73 7.59 -51.93 -0.39 0.33 16 37 H 0.08 1.67 7.39 -51.93 -0.38 1.28 16 LS Contribution 308.10 15.07 4.64 4.64 Total: -1.00 -30.21 308.10 -6.25 -36.46 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -4.87 Total: 7.39 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -0.47 Total: -3.37 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 0.18 Total: -39.86 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -0.71 Total: -21.06 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.21 -6.25 -36.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829998489.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.281 kcal (2) G-P(sol) polarization free energy of solvation -30.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds