Wall clock time and date at job start Sun Mar 29 2020 23:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47102 * 2 1 4 4 C 1.47198 * 109.47240 * 119.99836 * 2 1 3 5 5 N 2.60804 * 109.47020 * 119.99758 * 2 1 3 6 6 O 1.42901 * 109.47227 * 239.99746 * 2 1 3 7 7 C 1.42904 * 113.99489 * 90.00200 * 6 2 1 8 8 C 1.53006 * 109.46701 * 180.02562 * 7 6 2 9 9 N 1.46907 * 109.46855 * 64.99786 * 8 7 6 10 10 C 1.48528 * 111.00111 * 287.39512 * 9 8 7 11 11 C 1.55099 * 103.28381 * 200.33449 * 10 9 8 12 12 C 1.54593 * 102.84490 * 37.30637 * 11 10 9 13 13 O 1.42898 * 110.30719 * 97.12142 * 12 11 10 14 14 C 1.50702 * 110.30772 * 219.18689 * 12 11 10 15 15 H 1.08002 * 120.00299 * 117.21456 * 14 12 11 16 16 C 1.37884 * 119.99942 * 296.93014 * 14 12 11 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 12 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 12 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 C 1.47903 * 110.99661 * 169.99828 * 9 8 7 23 23 H 1.09008 * 109.47220 * 300.00467 * 1 2 3 24 24 H 1.09004 * 109.46956 * 59.99934 * 1 2 3 25 25 H 1.08988 * 109.47524 * 180.02562 * 1 2 3 26 26 H 1.08991 * 109.47513 * 60.00208 * 7 6 2 27 27 H 1.08998 * 109.47005 * 299.99923 * 7 6 2 28 28 H 1.08997 * 109.47048 * 305.00191 * 8 7 6 29 29 H 1.08993 * 109.46895 * 184.99621 * 8 7 6 30 30 H 1.09001 * 110.66718 * 318.71611 * 10 9 8 31 31 H 1.09006 * 110.66736 * 81.67838 * 10 9 8 32 32 H 1.09001 * 110.71257 * 278.99719 * 11 10 9 33 33 H 1.08998 * 110.81298 * 155.66416 * 11 10 9 34 34 H 0.96691 * 114.00808 * 62.79185 * 13 12 11 35 35 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 36 36 H 1.09001 * 109.91924 * 26.49349 * 22 9 8 37 37 H 1.08997 * 110.08057 * 265.28894 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6939 1.2019 5 7 2.3993 -1.2294 2.1295 6 8 2.0063 -0.6737 -1.1667 7 6 2.2001 0.1830 -2.2940 8 6 2.7079 -0.6408 -3.4792 9 7 1.6713 -1.5968 -3.8910 10 6 1.5419 -2.6995 -2.9044 11 6 0.8481 -3.8244 -3.7161 12 6 1.4920 -3.6861 -5.1148 13 8 2.5654 -4.6180 -5.2610 14 6 0.4593 -3.9062 -6.1901 15 1 0.2138 -3.1078 -6.8747 16 6 -0.1679 -5.1289 -6.3036 17 7 0.1310 -6.1011 -5.4699 18 14 -1.4424 -5.4041 -7.6412 19 1 -1.5957 -4.1629 -8.4418 20 1 -1.0000 -6.5118 -8.5260 21 1 -2.7442 -5.7568 -7.0197 22 6 2.0254 -2.2427 -5.1735 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0275 0.0005 26 1 2.9319 0.9513 -2.0450 27 1 1.2538 0.6547 -2.5588 28 1 3.6066 -1.1834 -3.1860 29 1 2.9400 0.0242 -4.3109 30 1 2.5236 -3.0248 -2.5601 31 1 0.9228 -2.3913 -2.0619 32 1 -0.2274 -3.6551 -3.7682 33 1 1.0653 -4.8023 -3.2865 34 1 2.2920 -5.5441 -5.2107 35 1 -0.3106 -6.9612 -5.5496 36 1 3.1082 -2.2518 -5.2982 37 1 1.5609 -1.7086 -6.0024 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829998489.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:31:52 Heat of formation + Delta-G solvation = -83.802801 kcal Electronic energy + Delta-G solvation = -19281.069107 eV Core-core repulsion = 16250.843173 eV Total energy + Delta-G solvation = -3030.225934 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.28997 -39.34105 -37.41504 -36.45637 -34.11852 -33.07293 -31.62863 -29.77382 -28.83965 -26.22265 -25.23339 -23.22975 -21.76221 -21.21112 -19.19110 -19.06612 -17.84791 -17.19695 -16.85459 -16.32232 -15.93207 -15.61435 -15.08282 -14.96184 -14.70144 -14.08308 -13.96499 -13.84064 -13.67868 -13.58747 -13.18717 -13.14774 -12.86443 -12.75166 -12.63215 -12.44347 -12.24282 -12.06529 -12.01988 -11.86649 -11.54979 -11.02671 -10.61484 -10.51937 -10.04509 -9.26476 -8.18213 -6.32278 1.41505 1.42009 1.44581 1.55754 1.69021 2.41872 2.68511 3.03131 3.21831 3.31078 3.97472 4.03327 4.11888 4.21032 4.35456 4.41604 4.52575 4.56409 4.65797 4.72633 4.75363 4.89715 4.94422 5.04566 5.08581 5.16938 5.36417 5.40376 5.47767 5.64614 5.81127 6.03385 6.18646 6.22459 6.33736 6.47047 6.73585 7.37655 7.45364 8.88016 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.030233 B = 0.005004 C = 0.004868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.907430 B = 5593.689452 C = 5750.836856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.185 3.815 3 H 0.148 0.852 4 C 0.235 3.765 5 N -0.474 5.474 6 O -0.396 6.396 7 C 0.072 3.928 8 C 0.038 3.962 9 N -0.508 5.508 10 C 0.062 3.938 11 C -0.114 4.114 12 C 0.223 3.777 13 O -0.605 6.605 14 C -0.550 4.550 15 H 0.058 0.942 16 C 0.025 3.975 17 N -0.919 5.919 18 Si 0.961 3.039 19 H -0.268 1.268 20 H -0.281 1.281 21 H -0.279 1.279 22 C 0.061 3.939 23 H 0.091 0.909 24 H 0.095 0.905 25 H 0.050 0.950 26 H 0.093 0.907 27 H 0.081 0.919 28 H 0.027 0.973 29 H 0.107 0.893 30 H 0.019 0.981 31 H 0.092 0.908 32 H 0.047 0.953 33 H 0.038 0.962 34 H 0.375 0.625 35 H 0.267 0.733 36 H 0.032 0.968 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.635 15.608 6.820 17.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.125 3.875 3 H 0.165 0.835 4 C -0.083 4.083 5 N -0.153 5.153 6 O -0.315 6.315 7 C -0.003 4.003 8 C -0.090 4.090 9 N -0.233 5.233 10 C -0.066 4.066 11 C -0.153 4.153 12 C 0.183 3.817 13 O -0.413 6.413 14 C -0.589 4.589 15 H 0.076 0.924 16 C -0.175 4.175 17 N -0.559 5.559 18 Si 0.787 3.213 19 H -0.192 1.192 20 H -0.207 1.207 21 H -0.205 1.205 22 C -0.067 4.067 23 H 0.110 0.890 24 H 0.114 0.886 25 H 0.070 0.930 26 H 0.111 0.889 27 H 0.099 0.901 28 H 0.046 0.954 29 H 0.125 0.875 30 H 0.037 0.963 31 H 0.110 0.890 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.225 0.775 35 H 0.077 0.923 36 H 0.050 0.950 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.079 15.307 8.111 17.357 hybrid contribution -0.271 -1.521 -0.876 1.776 sum 0.809 13.787 7.235 15.591 Atomic orbital electron populations 1.22253 0.91560 1.03546 1.05182 1.19590 0.95149 0.95440 0.77311 0.83472 1.29656 0.91681 0.92575 0.94409 1.81209 1.10303 1.09477 1.14316 1.88100 1.86889 1.36453 1.20026 1.22798 1.02180 0.91947 0.83403 1.22532 0.92512 0.96007 0.97993 1.64821 1.42627 1.14005 1.01835 1.23103 0.98041 0.90497 0.94911 1.22835 0.99029 0.96347 0.97121 1.19699 0.84041 0.85783 0.92176 1.86080 1.38389 1.20567 1.96311 1.22024 1.22233 0.98515 1.16086 0.92412 1.25739 0.98298 0.95678 0.97782 1.69773 1.44196 1.04026 1.37926 0.85462 0.78658 0.78089 0.79113 1.19177 1.20732 1.20505 1.22686 0.97407 0.93663 0.92976 0.89039 0.88619 0.93048 0.88878 0.90087 0.95416 0.87456 0.96262 0.88987 0.93411 0.94282 0.77492 0.92346 0.94968 0.90361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.15 9.48 71.98 0.68 -1.47 16 2 C 0.19 2.73 3.17 28.79 0.09 2.82 16 3 H 0.15 0.87 7.79 -2.39 -0.02 0.85 16 4 C 0.23 5.26 15.03 89.44 1.34 6.60 16 5 N -0.47 -13.74 18.54 20.01 0.37 -13.37 16 6 O -0.40 -8.61 7.31 -148.98 -1.09 -9.70 16 7 C 0.07 1.26 6.06 71.98 0.44 1.70 16 8 C 0.04 0.97 5.27 86.30 0.45 1.43 16 9 N -0.51 -18.14 5.25 -882.67 -4.63 -22.77 16 10 C 0.06 2.45 5.33 86.71 0.46 2.91 16 11 C -0.11 -5.54 5.43 31.86 0.17 -5.37 16 12 C 0.22 11.34 0.99 -10.66 -0.01 11.33 16 13 O -0.60 -32.96 12.92 -148.98 -1.93 -34.88 16 14 C -0.55 -30.04 8.11 25.60 0.21 -29.83 16 15 H 0.06 3.12 7.34 -2.91 -0.02 3.09 16 16 C 0.02 1.32 5.26 84.66 0.45 1.76 16 17 N -0.92 -50.65 10.88 21.45 0.23 -50.41 16 18 Si 0.96 42.72 29.54 68.60 2.03 44.75 16 19 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 20 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 21 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 22 C 0.06 2.59 6.13 86.44 0.53 3.12 16 23 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 24 H 0.10 1.02 7.87 -2.39 -0.02 1.00 16 25 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.09 0.94 8.08 -2.39 -0.02 0.92 16 27 H 0.08 1.21 7.87 -2.39 -0.02 1.19 16 28 H 0.03 0.80 7.83 -2.39 -0.02 0.78 16 29 H 0.11 2.31 8.08 -2.39 -0.02 2.29 16 30 H 0.02 0.80 7.81 -2.39 -0.02 0.78 16 31 H 0.09 3.33 6.79 -2.38 -0.02 3.31 16 32 H 0.05 2.43 7.86 -2.39 -0.02 2.41 16 33 H 0.04 2.02 8.02 -2.39 -0.02 2.00 16 34 H 0.38 21.04 7.17 -74.06 -0.53 20.51 16 35 H 0.27 14.00 8.31 -92.70 -0.77 13.23 16 36 H 0.03 1.36 7.59 -2.39 -0.02 1.34 16 37 H 0.08 3.30 7.39 -2.39 -0.02 3.29 16 Total: -1.00 -67.01 308.10 0.34 -66.67 By element: Atomic # 1 Polarization: 24.17 SS G_CDS: 0.54 Total: 24.71 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: 4.82 Total: -5.00 kcal Atomic # 7 Polarization: -82.53 SS G_CDS: -4.03 Total: -86.55 kcal Atomic # 8 Polarization: -41.57 SS G_CDS: -3.01 Total: -44.58 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -67.01 0.34 -66.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829998489.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.133 kcal (2) G-P(sol) polarization free energy of solvation -67.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds