Wall clock time and date at job start Mon Mar 30 2020 00:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.45754 * 117.94505 * 2 1 4 4 C 1.52925 * 110.48577 * 199.07670 * 3 2 1 5 5 C 1.53294 * 108.60931 * 309.22530 * 4 3 2 6 6 C 1.53068 * 108.45741 * 67.62780 * 5 4 3 7 7 H 1.08998 * 109.40445 * 71.06932 * 6 5 4 8 8 N 1.46896 * 109.40167 * 190.90204 * 6 5 4 9 9 C 1.47962 * 111.00206 * 180.17127 * 8 6 5 10 10 C 1.53933 * 86.18036 * 137.57868 * 9 8 6 11 11 O 1.42903 * 113.73455 * 90.64263 * 10 9 8 12 12 C 1.50702 * 113.73325 * 221.81483 * 10 9 8 13 13 H 1.07996 * 120.00082 * 358.09933 * 12 10 9 14 14 C 1.37882 * 119.99818 * 178.10181 * 12 10 9 15 15 N 1.31515 * 119.99822 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 119.99751 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47044 * 60.00228 * 16 14 12 18 18 H 1.48498 * 109.46996 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47160 * 300.00155 * 16 14 12 20 20 C 1.48304 * 111.00332 * 279.52139 * 8 6 5 21 21 C 1.33360 * 117.94669 * 179.97438 * 2 1 3 22 22 O 1.21275 * 118.24421 * 357.78479 * 21 2 1 23 23 H 1.09004 * 109.47303 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47340 * 300.02314 * 1 2 3 25 25 H 1.08995 * 109.47424 * 60.02396 * 1 2 3 26 26 H 1.09000 * 109.29884 * 319.37823 * 3 2 1 27 27 H 1.08995 * 109.30628 * 78.75985 * 3 2 1 28 28 H 1.09003 * 109.60770 * 68.99395 * 4 3 2 29 29 H 1.08999 * 109.60329 * 189.32513 * 4 3 2 30 30 H 1.09000 * 109.71430 * 307.84963 * 5 4 3 31 31 H 1.08998 * 109.59838 * 187.33498 * 5 4 3 32 32 H 1.08997 * 113.75944 * 23.26083 * 9 8 6 33 33 H 1.09000 * 113.75834 * 251.89949 * 9 8 6 34 34 H 0.96700 * 114.00311 * 181.89938 * 11 10 9 35 35 H 0.97006 * 119.99605 * 180.02562 * 15 14 12 36 36 H 1.09004 * 113.85839 * 108.14487 * 20 8 6 37 37 H 1.09000 * 113.75896 * 336.68350 * 20 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1480 1.2876 0.0000 4 6 3.5948 1.1259 -0.4682 5 6 4.2477 -0.0008 0.3406 6 6 3.5838 -1.3240 -0.0484 7 1 3.8878 -1.5985 -1.0586 8 7 4.0024 -2.3743 0.8895 9 6 3.3829 -3.6725 0.5428 10 6 4.7618 -4.2915 0.8346 11 8 4.9302 -4.7071 2.1914 12 6 5.1753 -5.3468 -0.1586 13 1 4.5081 -5.6239 -0.9613 14 6 6.4055 -5.9586 -0.0423 15 7 7.2177 -5.6215 0.9356 16 14 6.9178 -7.2672 -1.2729 17 1 6.9352 -6.6832 -2.6382 18 1 8.2739 -7.7655 -0.9298 19 1 5.9512 -8.3937 -1.2287 20 6 5.3442 -2.8981 0.5366 21 6 2.0899 -1.1781 0.0005 22 8 1.4158 -2.1854 0.0423 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5142 0.8898 25 1 -0.3634 0.5134 -0.8901 26 1 1.6270 1.9717 -0.6698 27 1 2.1397 1.6999 1.0089 28 1 3.6101 0.8724 -1.5282 29 1 4.1376 2.0573 -0.3070 30 1 4.1061 0.1816 1.4058 31 1 5.3129 -0.0440 0.1135 32 1 3.0791 -3.7493 -0.5011 33 1 2.6043 -3.9870 1.2378 34 1 5.8052 -5.0700 2.3859 35 1 8.0833 -6.0517 1.0172 36 1 6.1315 -2.5945 1.2266 37 1 5.6128 -2.7489 -0.5092 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169626953.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:01:38 Heat of formation + Delta-G solvation = -65.123599 kcal Electronic energy + Delta-G solvation = -19869.409693 eV Core-core repulsion = 16839.993750 eV Total energy + Delta-G solvation = -3029.415943 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.00857 -40.15765 -37.54972 -36.44937 -34.32272 -34.10672 -30.95854 -28.55335 -28.11427 -26.86957 -26.09498 -23.45888 -23.10717 -20.58702 -19.76906 -19.15739 -17.68893 -17.59312 -17.22421 -17.06082 -16.40489 -15.80169 -15.51037 -15.28838 -14.85704 -14.57645 -14.21793 -13.94819 -13.62231 -13.44964 -13.28138 -13.20263 -13.02684 -12.78906 -12.72445 -12.30837 -12.23492 -12.11373 -12.02212 -11.71735 -11.23016 -10.69775 -10.45106 -10.15903 -9.71275 -9.66443 -8.25109 -6.43627 1.41365 1.43531 1.50407 1.52368 2.00631 2.37018 2.95043 3.09186 3.45824 3.78376 3.80184 3.93227 4.10950 4.17687 4.32053 4.39744 4.44864 4.50028 4.58519 4.65230 4.68709 4.85956 4.92316 4.95086 5.01603 5.04357 5.11360 5.30718 5.36159 5.39493 5.50316 5.72261 5.99325 6.17879 6.39590 6.60246 7.11878 7.29016 7.51256 8.79709 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.035667 B = 0.005710 C = 0.005521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.858041 B = 4902.634268 C = 5070.732810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.606 5.606 3 C 0.108 3.892 4 C -0.126 4.126 5 C -0.106 4.106 6 C 0.030 3.970 7 H 0.069 0.931 8 N -0.470 5.470 9 C 0.052 3.948 10 C 0.212 3.788 11 O -0.584 6.584 12 C -0.565 4.565 13 H 0.056 0.944 14 C 0.032 3.968 15 N -0.915 5.915 16 Si 0.967 3.033 17 H -0.269 1.269 18 H -0.275 1.275 19 H -0.276 1.276 20 C 0.010 3.990 21 C 0.516 3.484 22 O -0.585 6.585 23 H 0.060 0.940 24 H 0.078 0.922 25 H 0.086 0.914 26 H 0.108 0.892 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.122 0.878 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.051 0.949 34 H 0.382 0.618 35 H 0.275 0.725 36 H 0.069 0.931 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.940 16.887 -4.383 18.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.338 5.338 3 C -0.013 4.013 4 C -0.164 4.164 5 C -0.144 4.144 6 C -0.081 4.081 7 H 0.086 0.914 8 N -0.194 5.194 9 C -0.077 4.077 10 C 0.171 3.829 11 O -0.395 6.395 12 C -0.603 4.603 13 H 0.075 0.925 14 C -0.169 4.169 15 N -0.555 5.555 16 Si 0.792 3.208 17 H -0.194 1.194 18 H -0.200 1.200 19 H -0.201 1.201 20 C -0.119 4.119 21 C 0.304 3.696 22 O -0.466 6.466 23 H 0.079 0.921 24 H 0.097 0.903 25 H 0.105 0.895 26 H 0.126 0.874 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.140 0.860 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.235 0.765 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.839 16.888 -3.591 18.571 hybrid contribution 0.924 -1.494 -1.252 2.157 sum -5.915 15.394 -4.842 17.187 Atomic orbital electron populations 1.21861 0.78720 1.03506 1.03274 1.47358 1.08266 1.06186 1.72016 1.21737 0.93314 0.82936 1.03363 1.21904 0.94679 0.99856 0.99982 1.21607 1.00360 0.91074 1.01357 1.22264 0.91610 0.97246 0.97029 0.91368 1.68616 1.04819 1.03462 1.42539 1.23642 0.96449 0.89199 0.98363 1.20285 0.91277 0.90510 0.80859 1.86052 1.40193 1.84137 1.29086 1.21805 1.02397 1.23321 1.12774 0.92545 1.25778 0.95566 0.98128 0.97392 1.69493 1.10197 1.43398 1.32413 0.85475 0.77416 0.78825 0.79091 1.19356 1.19969 1.20141 1.24494 0.91076 0.97599 0.98727 1.20207 0.90607 0.83496 0.75333 1.90669 1.66710 1.37411 1.51772 0.92082 0.90331 0.89529 0.87353 0.90318 0.90865 0.86028 0.91018 0.90405 0.91981 0.93068 0.76496 0.91494 0.91279 0.91810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.44 10.47 127.77 1.34 2.78 16 2 N -0.61 -15.33 3.21 -851.62 -2.73 -18.06 16 3 C 0.11 1.66 6.40 86.50 0.55 2.21 16 4 C -0.13 -2.00 6.02 30.67 0.18 -1.82 16 5 C -0.11 -2.72 5.40 30.72 0.17 -2.55 16 6 C 0.03 1.09 1.88 44.03 0.08 1.17 16 7 H 0.07 2.49 7.62 -2.39 -0.02 2.47 16 8 N -0.47 -21.25 5.98 -889.85 -5.32 -26.57 16 9 C 0.05 2.69 5.22 86.41 0.45 3.14 16 10 C 0.21 11.60 1.40 -10.90 -0.02 11.59 16 11 O -0.58 -34.06 13.48 -148.98 -2.01 -36.07 16 12 C -0.57 -32.03 8.61 25.60 0.22 -31.81 16 13 H 0.06 3.19 7.81 -2.91 -0.02 3.17 16 14 C 0.03 1.71 5.40 84.66 0.46 2.17 16 15 N -0.91 -49.99 11.20 21.45 0.24 -49.75 16 16 Si 0.97 42.66 29.54 68.60 2.03 44.68 16 17 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 18 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 19 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 20 C 0.01 0.48 7.17 86.34 0.62 1.10 16 21 C 0.52 18.48 7.20 87.71 0.63 19.11 16 22 O -0.59 -26.06 12.90 -3.01 -0.04 -26.10 16 23 H 0.06 1.70 6.59 -2.38 -0.02 1.68 16 24 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 25 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.11 0.98 8.10 -2.39 -0.02 0.96 16 27 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.07 1.17 8.12 -2.39 -0.02 1.15 16 29 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.07 1.94 8.13 -2.39 -0.02 1.92 16 31 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.06 3.20 7.37 -2.39 -0.02 3.18 16 33 H 0.05 2.82 7.97 -2.39 -0.02 2.80 16 34 H 0.38 22.22 6.60 -74.06 -0.49 21.73 16 35 H 0.28 14.11 8.31 -92.70 -0.77 13.34 16 36 H 0.07 3.35 8.14 -2.38 -0.02 3.33 16 37 H 0.06 2.95 7.57 -2.39 -0.02 2.93 16 Total: -1.00 -70.00 295.83 -2.57 -72.57 By element: Atomic # 1 Polarization: 31.64 SS G_CDS: 0.58 Total: 32.21 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: 4.69 Total: 7.08 kcal Atomic # 7 Polarization: -86.57 SS G_CDS: -7.81 Total: -94.38 kcal Atomic # 8 Polarization: -60.12 SS G_CDS: -2.05 Total: -62.16 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.68 kcal Total: -70.00 -2.57 -72.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169626953.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.444 kcal (2) G-P(sol) polarization free energy of solvation -69.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds