Wall clock time and date at job start Sun Mar 29 2020 23:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46767 * 2 1 4 4 C 1.52999 * 109.47062 * 239.99953 * 2 1 3 5 5 C 1.53006 * 109.46873 * 175.55894 * 4 2 1 6 6 C 1.50704 * 109.46826 * 179.71103 * 5 4 2 7 7 H 1.08000 * 119.99715 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99770 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99856 * 180.02562 * 8 6 5 10 10 Si 1.86798 * 119.99867 * 0.02562 * 8 6 5 11 11 H 1.48496 * 109.47579 * 89.99967 * 10 8 6 12 12 H 1.48502 * 109.46931 * 209.99822 * 10 8 6 13 13 H 1.48498 * 109.47268 * 329.99163 * 10 8 6 14 14 N 1.46898 * 109.47201 * 119.99686 * 2 1 3 15 15 C 1.46898 * 111.00238 * 229.40533 * 14 2 1 16 16 H 1.08998 * 109.51944 * 327.20654 * 15 14 2 17 17 C 1.53246 * 109.51989 * 207.08166 * 15 14 2 18 18 C 1.53247 * 108.56513 * 184.48095 * 17 15 14 19 19 C 1.50589 * 109.16185 * 55.61320 * 18 17 15 20 20 O 1.21230 * 119.35689 * 150.90791 * 19 18 17 21 21 N 1.34139 * 121.28130 * 330.92623 * 19 18 17 22 22 C 1.34148 * 122.58730 * 0.80758 * 21 19 18 23 23 O 1.21225 * 119.35670 * 179.17388 * 22 21 19 24 24 H 1.09002 * 109.46804 * 64.75126 * 1 2 3 25 25 H 1.08994 * 109.47138 * 184.75184 * 1 2 3 26 26 H 1.09000 * 109.46944 * 304.75593 * 1 2 3 27 27 H 1.09003 * 109.47008 * 295.56007 * 4 2 1 28 28 H 1.09002 * 109.47213 * 55.56322 * 4 2 1 29 29 H 1.08995 * 109.47376 * 299.71493 * 5 4 2 30 30 H 1.09008 * 109.46836 * 59.71666 * 5 4 2 31 31 H 0.96994 * 119.99753 * 180.02562 * 9 8 6 32 32 H 1.00906 * 110.99763 * 353.36003 * 14 2 1 33 33 H 1.08998 * 109.62104 * 64.75893 * 17 15 14 34 34 H 1.08998 * 109.62447 * 304.20190 * 17 15 14 35 35 H 1.09004 * 109.51777 * 295.71156 * 18 17 15 36 36 H 1.08996 * 109.57677 * 175.55136 * 18 17 15 37 37 H 0.97000 * 118.70817 * 180.52429 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5660 -0.6252 -1.3063 6 6 4.0688 -1.3417 -2.5330 7 1 3.3699 -1.8176 -3.2049 8 6 5.4211 -1.3889 -2.7981 9 7 5.8599 -2.0137 -3.8689 10 14 6.6298 -0.5652 -1.6362 11 1 7.0528 -1.5340 -0.5934 12 1 7.8189 -0.1098 -2.4004 13 1 5.9787 0.6034 -0.9914 14 7 2.0197 -0.6924 1.1994 15 6 3.0365 0.1100 1.8923 16 1 3.6081 0.6829 1.1622 17 6 3.9792 -0.8167 2.6677 18 6 4.9595 0.0454 3.4704 19 6 4.1823 0.9894 4.3494 20 8 4.6664 1.3606 5.3970 21 7 2.9647 1.4273 3.9958 22 6 2.3614 1.0458 2.8599 23 8 1.2534 1.4664 2.6053 24 1 -0.3633 0.4384 -0.9295 25 1 -0.3633 -1.0241 0.0851 26 1 -0.3633 0.5859 0.8443 27 1 1.7431 -1.7693 -1.2103 28 1 1.6132 -0.2554 -2.1375 29 1 3.8627 0.4226 -1.3503 30 1 3.9926 -1.0866 -0.4156 31 1 6.8112 -2.0472 -4.0552 32 1 1.2580 -0.9245 1.8193 33 1 4.5316 -1.4448 1.9688 34 1 3.4004 -1.4420 3.3474 35 1 5.5862 0.6173 2.7861 36 1 5.5870 -0.5956 4.0896 37 1 2.5005 2.0408 4.5865 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172481034.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:18:56 Heat of formation + Delta-G solvation = -86.681546 kcal Electronic energy + Delta-G solvation = -19508.183186 eV Core-core repulsion = 16477.832421 eV Total energy + Delta-G solvation = -3030.350766 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.68644 -39.23409 -37.21365 -35.59471 -33.94456 -32.85901 -31.04248 -29.66884 -26.49918 -25.27176 -23.91278 -23.02065 -21.15152 -20.18628 -19.20614 -17.88037 -17.47900 -16.60492 -16.48492 -15.52870 -15.39759 -14.89241 -14.67495 -14.23452 -14.10446 -13.56648 -13.05207 -12.72410 -12.59449 -12.54446 -12.31935 -11.83133 -11.54547 -11.47486 -11.42352 -10.91141 -10.58436 -10.52880 -10.44680 -10.44367 -9.91704 -9.71940 -9.52373 -9.12006 -8.50962 -8.36398 -6.01146 -3.97484 1.27616 2.55025 2.56867 3.27355 3.33967 3.37111 3.73335 3.99798 4.40783 4.45390 4.52321 4.84597 4.96279 5.13968 5.29457 5.33427 5.45229 5.53721 5.63765 5.66558 5.81113 5.95908 6.07109 6.27465 6.33260 6.39313 6.57926 6.68564 7.01934 7.05886 7.12952 7.39456 7.40557 7.58425 7.60852 7.85525 8.59689 9.05655 9.61859 11.13000 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.019167 B = 0.007416 C = 0.005618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.487108 B = 3774.842223 C = 4983.067317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.082 3.918 3 H 0.054 0.946 4 C -0.092 4.092 5 C -0.010 4.010 6 C -0.515 4.515 7 H 0.069 0.931 8 C 0.063 3.937 9 N -0.907 5.907 10 Si 0.879 3.121 11 H -0.276 1.276 12 H -0.291 1.291 13 H -0.268 1.268 14 N -0.644 5.644 15 C 0.069 3.931 16 H 0.127 0.873 17 C -0.115 4.115 18 C -0.146 4.146 19 C 0.527 3.473 20 O -0.510 6.510 21 N -0.675 5.675 22 C 0.493 3.507 23 O -0.499 6.499 24 H 0.061 0.939 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.004 0.996 30 H 0.022 0.978 31 H 0.261 0.739 32 H 0.342 0.658 33 H 0.110 0.890 34 H 0.079 0.921 35 H 0.114 0.886 36 H 0.118 0.882 37 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.346 4.587 15.060 16.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.026 4.026 3 H 0.072 0.928 4 C -0.130 4.130 5 C -0.047 4.047 6 C -0.553 4.553 7 H 0.087 0.913 8 C -0.137 4.137 9 N -0.547 5.547 10 Si 0.707 3.293 11 H -0.201 1.201 12 H -0.217 1.217 13 H -0.192 1.192 14 N -0.274 5.274 15 C -0.046 4.046 16 H 0.144 0.856 17 C -0.153 4.153 18 C -0.186 4.186 19 C 0.317 3.683 20 O -0.384 6.384 21 N -0.340 5.340 22 C 0.280 3.720 23 O -0.371 6.371 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.022 0.978 30 H 0.040 0.960 31 H 0.071 0.929 32 H 0.162 0.838 33 H 0.128 0.872 34 H 0.098 0.902 35 H 0.132 0.868 36 H 0.136 0.864 37 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -4.969 4.417 14.850 16.271 hybrid contribution -0.010 1.455 1.151 1.855 sum -4.978 5.872 16.002 17.757 Atomic orbital electron populations 1.22165 0.95827 1.01896 1.02135 1.21836 0.93644 0.96324 0.90832 0.92753 1.21535 0.98406 0.99743 0.93298 1.19543 0.91984 0.95817 0.97375 1.21215 0.92711 1.33762 1.07585 0.91262 1.25052 0.98437 0.95101 0.95142 1.69922 1.14395 1.43687 1.26667 0.86790 0.80792 0.80303 0.81438 1.20132 1.21680 1.19240 1.60813 1.16548 1.41937 1.08101 1.22165 0.95301 0.92767 0.94335 0.85566 1.21793 0.96432 0.97812 0.99255 1.22013 0.99016 0.98090 0.99467 1.21148 0.80381 0.80359 0.86453 1.90775 1.67362 1.56147 1.24071 1.45033 1.19427 1.45911 1.23679 1.22664 0.86499 0.81202 0.81596 1.90762 1.19294 1.53102 1.73929 0.91994 0.92325 0.92534 0.92131 0.92835 0.97777 0.95979 0.92896 0.83843 0.87199 0.90238 0.86764 0.86367 0.75489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 9.01 37.16 0.33 -1.81 16 2 C 0.08 1.25 2.07 -67.71 -0.14 1.11 16 3 H 0.05 0.86 7.34 -51.93 -0.38 0.48 16 4 C -0.09 -1.73 4.83 -26.73 -0.13 -1.86 16 5 C -0.01 -0.22 3.36 -27.88 -0.09 -0.32 16 6 C -0.51 -14.30 9.66 -34.44 -0.33 -14.63 16 7 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 8 C 0.06 1.79 5.47 -17.82 -0.10 1.70 16 9 N -0.91 -27.68 13.96 55.43 0.77 -26.91 16 10 Si 0.88 20.71 27.47 -169.99 -4.67 16.04 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.27 -5.87 6.54 56.52 0.37 -5.50 16 14 N -0.64 -8.67 5.54 -100.88 -0.56 -9.23 16 15 C 0.07 0.83 1.93 -68.79 -0.13 0.70 16 16 H 0.13 1.67 7.13 -51.93 -0.37 1.30 16 17 C -0.11 -1.14 5.69 -26.48 -0.15 -1.29 16 18 C -0.15 -1.29 6.07 -27.81 -0.17 -1.46 16 19 C 0.53 5.67 7.75 -11.32 -0.09 5.58 16 20 O -0.51 -7.00 17.88 5.60 0.10 -6.90 16 21 N -0.68 -6.98 5.09 -11.75 -0.06 -7.04 16 22 C 0.49 5.83 7.33 -11.32 -0.08 5.75 16 23 O -0.50 -7.11 15.96 5.60 0.09 -7.02 16 24 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.74 7.41 -51.93 -0.38 0.36 16 27 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.00 0.09 7.20 -51.93 -0.37 -0.28 16 30 H 0.02 0.47 6.72 -51.92 -0.35 0.13 16 31 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.34 4.18 7.60 -39.29 -0.30 3.89 16 33 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.11 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.12 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.41 3.83 8.79 -40.82 -0.36 3.48 16 LS Contribution 303.45 15.07 4.57 4.57 Total: -1.00 -32.33 303.45 -6.32 -38.64 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -5.48 Total: 4.38 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -1.08 Total: -6.53 kcal Atomic # 7 Polarization: -43.33 SS G_CDS: 0.15 Total: -43.18 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: 0.19 Total: -13.93 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.67 Total: 16.04 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.33 -6.32 -38.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172481034.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.037 kcal (2) G-P(sol) polarization free energy of solvation -32.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds