Wall clock time and date at job start Sun Mar 29 2020 23:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46767 * 2 1 4 4 C 1.52999 * 109.47062 * 239.99953 * 2 1 3 5 5 C 1.53006 * 109.46873 * 175.55894 * 4 2 1 6 6 C 1.50704 * 109.46826 * 179.71103 * 5 4 2 7 7 H 1.08000 * 119.99715 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99770 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99856 * 180.02562 * 8 6 5 10 10 Si 1.86798 * 119.99867 * 0.02562 * 8 6 5 11 11 H 1.48496 * 109.47579 * 89.99967 * 10 8 6 12 12 H 1.48502 * 109.46931 * 209.99822 * 10 8 6 13 13 H 1.48498 * 109.47268 * 329.99163 * 10 8 6 14 14 N 1.46898 * 109.47201 * 119.99686 * 2 1 3 15 15 C 1.46898 * 111.00238 * 229.40533 * 14 2 1 16 16 H 1.08998 * 109.51944 * 327.20654 * 15 14 2 17 17 C 1.53246 * 109.51989 * 207.08166 * 15 14 2 18 18 C 1.53247 * 108.56513 * 184.48095 * 17 15 14 19 19 C 1.50589 * 109.16185 * 55.61320 * 18 17 15 20 20 O 1.21230 * 119.35689 * 150.90791 * 19 18 17 21 21 N 1.34139 * 121.28130 * 330.92623 * 19 18 17 22 22 C 1.34148 * 122.58730 * 0.80758 * 21 19 18 23 23 O 1.21225 * 119.35670 * 179.17388 * 22 21 19 24 24 H 1.09002 * 109.46804 * 64.75126 * 1 2 3 25 25 H 1.08994 * 109.47138 * 184.75184 * 1 2 3 26 26 H 1.09000 * 109.46944 * 304.75593 * 1 2 3 27 27 H 1.09003 * 109.47008 * 295.56007 * 4 2 1 28 28 H 1.09002 * 109.47213 * 55.56322 * 4 2 1 29 29 H 1.08995 * 109.47376 * 299.71493 * 5 4 2 30 30 H 1.09008 * 109.46836 * 59.71666 * 5 4 2 31 31 H 0.96994 * 119.99753 * 180.02562 * 9 8 6 32 32 H 1.00906 * 110.99763 * 353.36003 * 14 2 1 33 33 H 1.08998 * 109.62104 * 64.75893 * 17 15 14 34 34 H 1.08998 * 109.62447 * 304.20190 * 17 15 14 35 35 H 1.09004 * 109.51777 * 295.71156 * 18 17 15 36 36 H 1.08996 * 109.57677 * 175.55136 * 18 17 15 37 37 H 0.97000 * 118.70817 * 180.52429 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5660 -0.6252 -1.3063 6 6 4.0688 -1.3417 -2.5330 7 1 3.3699 -1.8176 -3.2049 8 6 5.4211 -1.3889 -2.7981 9 7 5.8599 -2.0137 -3.8689 10 14 6.6298 -0.5652 -1.6362 11 1 7.0528 -1.5340 -0.5934 12 1 7.8189 -0.1098 -2.4004 13 1 5.9787 0.6034 -0.9914 14 7 2.0197 -0.6924 1.1994 15 6 3.0365 0.1100 1.8923 16 1 3.6081 0.6829 1.1622 17 6 3.9792 -0.8167 2.6677 18 6 4.9595 0.0454 3.4704 19 6 4.1823 0.9894 4.3494 20 8 4.6664 1.3606 5.3970 21 7 2.9647 1.4273 3.9958 22 6 2.3614 1.0458 2.8599 23 8 1.2534 1.4664 2.6053 24 1 -0.3633 0.4384 -0.9295 25 1 -0.3633 -1.0241 0.0851 26 1 -0.3633 0.5859 0.8443 27 1 1.7431 -1.7693 -1.2103 28 1 1.6132 -0.2554 -2.1375 29 1 3.8627 0.4226 -1.3503 30 1 3.9926 -1.0866 -0.4156 31 1 6.8112 -2.0472 -4.0552 32 1 1.2580 -0.9245 1.8193 33 1 4.5316 -1.4448 1.9688 34 1 3.4004 -1.4420 3.3474 35 1 5.5862 0.6173 2.7861 36 1 5.5870 -0.5956 4.0896 37 1 2.5005 2.0408 4.5865 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172481034.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:18:55 Heat of formation + Delta-G solvation = -111.641240 kcal Electronic energy + Delta-G solvation = -19509.265520 eV Core-core repulsion = 16477.832421 eV Total energy + Delta-G solvation = -3031.433099 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.59226 -40.19878 -38.37841 -36.56038 -35.30386 -34.44504 -32.52074 -30.97628 -27.44894 -27.05472 -24.74663 -23.92474 -22.79333 -21.54225 -20.17040 -18.79943 -18.77180 -18.30653 -17.42994 -16.57818 -16.47301 -16.16477 -15.79196 -15.56734 -15.19653 -14.94473 -14.38424 -14.24603 -13.89227 -13.59879 -13.33519 -13.14852 -13.04074 -12.80118 -12.48131 -12.26536 -11.83927 -11.66476 -11.62112 -11.41390 -11.37871 -11.32175 -11.16066 -11.11017 -10.64443 -9.48865 -8.19027 -6.22358 0.37755 1.41878 1.47073 1.57512 1.68469 1.71477 2.46346 2.87824 3.00871 3.17301 3.57859 3.71989 4.01304 4.05039 4.18788 4.31623 4.40628 4.50076 4.73944 4.80642 4.88920 4.92862 4.97392 5.06179 5.11677 5.20129 5.29755 5.36574 5.64094 5.68730 5.73691 5.80299 6.04203 6.25525 6.38558 6.41769 6.74134 6.86698 7.41839 8.98430 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.019167 B = 0.007416 C = 0.005618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.487108 B = 3774.842223 C = 4983.067317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.093 3.907 3 H 0.050 0.950 4 C -0.086 4.086 5 C -0.002 4.002 6 C -0.528 4.528 7 H 0.021 0.979 8 C -0.005 4.005 9 N -0.961 5.961 10 Si 0.951 3.049 11 H -0.252 1.252 12 H -0.296 1.296 13 H -0.237 1.237 14 N -0.649 5.649 15 C 0.065 3.935 16 H 0.120 0.880 17 C -0.109 4.109 18 C -0.140 4.140 19 C 0.533 3.467 20 O -0.540 6.540 21 N -0.668 5.668 22 C 0.505 3.495 23 O -0.524 6.524 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.049 0.951 28 H 0.042 0.958 29 H 0.008 0.992 30 H 0.039 0.961 31 H 0.263 0.737 32 H 0.351 0.649 33 H 0.105 0.895 34 H 0.092 0.908 35 H 0.127 0.873 36 H 0.138 0.862 37 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.767 5.379 17.502 18.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.017 4.017 3 H 0.069 0.931 4 C -0.124 4.124 5 C -0.039 4.039 6 C -0.566 4.566 7 H 0.040 0.960 8 C -0.200 4.200 9 N -0.602 5.602 10 Si 0.774 3.226 11 H -0.177 1.177 12 H -0.223 1.223 13 H -0.160 1.160 14 N -0.280 5.280 15 C -0.049 4.049 16 H 0.138 0.862 17 C -0.147 4.147 18 C -0.180 4.180 19 C 0.325 3.675 20 O -0.415 6.415 21 N -0.333 5.333 22 C 0.292 3.708 23 O -0.397 6.397 24 H 0.081 0.919 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.027 0.973 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.172 0.828 33 H 0.124 0.876 34 H 0.111 0.889 35 H 0.145 0.855 36 H 0.156 0.844 37 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -4.420 5.207 17.317 18.616 hybrid contribution -0.254 1.157 0.304 1.223 sum -4.674 6.364 17.622 19.310 Atomic orbital electron populations 1.22077 0.94275 1.02493 1.02389 1.21573 0.94805 0.95379 0.89910 0.93144 1.21419 0.96237 0.99600 0.95174 1.19459 0.94199 0.95080 0.95170 1.21616 0.92383 1.33779 1.08856 0.96009 1.26150 1.00913 0.95816 0.97154 1.70114 1.14965 1.45827 1.29329 0.85641 0.77295 0.80454 0.79226 1.17657 1.22305 1.16020 1.60707 1.17170 1.42100 1.08039 1.22234 0.95105 0.93151 0.94402 0.86240 1.21766 0.96199 0.97504 0.99211 1.22079 0.98681 0.97823 0.99372 1.21493 0.80063 0.79948 0.86044 1.90776 1.67910 1.57382 1.25456 1.44943 1.19421 1.45642 1.23249 1.22524 0.85942 0.80665 0.81619 1.90760 1.20421 1.54037 1.74507 0.91890 0.91591 0.92079 0.93192 0.93920 0.97345 0.94319 0.92869 0.82841 0.87614 0.88939 0.85507 0.84425 0.74995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.82 9.01 71.98 0.65 -3.17 16 2 C 0.09 2.65 2.07 44.92 0.09 2.75 16 3 H 0.05 1.50 7.34 -2.38 -0.02 1.49 16 4 C -0.09 -3.19 4.83 30.60 0.15 -3.05 16 5 C 0.00 -0.08 3.36 29.85 0.10 0.02 16 6 C -0.53 -29.91 9.66 25.60 0.25 -29.66 16 7 H 0.02 1.38 7.99 -2.91 -0.02 1.36 16 8 C -0.01 -0.29 5.47 84.65 0.46 0.17 16 9 N -0.96 -60.19 13.96 21.45 0.30 -59.89 16 10 Si 0.95 41.44 27.47 68.60 1.88 43.33 16 11 H -0.25 -10.04 7.11 99.48 0.71 -9.33 16 12 H -0.30 -13.17 7.11 99.48 0.71 -12.46 16 13 H -0.24 -9.09 6.54 99.48 0.65 -8.44 16 14 N -0.65 -15.94 5.54 -473.06 -2.62 -18.56 16 15 C 0.07 1.38 1.93 44.22 0.09 1.47 16 16 H 0.12 2.77 7.13 -2.39 -0.02 2.75 16 17 C -0.11 -1.76 5.69 30.76 0.18 -1.59 16 18 C -0.14 -1.94 6.07 29.90 0.18 -1.75 16 19 C 0.53 9.93 7.75 87.72 0.68 10.61 16 20 O -0.54 -13.55 17.88 -2.87 -0.05 -13.61 16 21 N -0.67 -12.13 5.09 -428.62 -2.18 -14.32 16 22 C 0.50 10.65 7.33 87.72 0.64 11.30 16 23 O -0.52 -13.81 15.96 -2.86 -0.05 -13.85 16 24 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.06 1.48 7.41 -2.39 -0.02 1.46 16 27 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.01 0.36 7.20 -2.39 -0.02 0.34 16 30 H 0.04 1.56 6.72 -2.38 -0.02 1.55 16 31 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 32 H 0.35 7.70 7.60 -89.69 -0.68 7.02 16 33 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.14 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.41 6.91 8.79 -92.71 -0.81 6.10 16 Total: -1.00 -71.03 303.45 0.28 -70.75 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: -0.47 Total: 19.06 kcal Atomic # 6 Polarization: -16.38 SS G_CDS: 3.46 Total: -12.91 kcal Atomic # 7 Polarization: -88.26 SS G_CDS: -4.51 Total: -92.77 kcal Atomic # 8 Polarization: -27.36 SS G_CDS: -0.10 Total: -27.46 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 1.88 Total: 43.33 kcal Total: -71.03 0.28 -70.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172481034.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.888 kcal (2) G-P(sol) polarization free energy of solvation -71.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds