Wall clock time and date at job start Sun Mar 29 2020 23:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47288 * 2 1 4 4 C 1.50698 * 109.47273 * 120.00460 * 2 1 3 5 5 H 1.08000 * 120.00067 * 119.99414 * 4 2 1 6 6 C 1.37874 * 119.99853 * 300.00185 * 4 2 1 7 7 N 1.31514 * 120.00100 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99938 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47087 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.46881 * 119.99585 * 8 6 4 11 11 H 1.48498 * 109.47135 * 239.99251 * 8 6 4 12 12 C 1.50700 * 109.46711 * 240.00411 * 2 1 3 13 13 O 1.21289 * 120.00027 * 264.36807 * 12 2 1 14 14 N 1.34775 * 120.00389 * 84.36658 * 12 2 1 15 15 C 1.46924 * 120.63357 * 175.35695 * 14 12 2 16 16 C 1.53192 * 108.77787 * 233.59035 * 15 14 12 17 17 C 1.53039 * 109.30904 * 305.36354 * 16 15 14 18 18 C 1.50707 * 109.45803 * 181.38544 * 17 16 15 19 19 N 1.34775 * 120.00111 * 59.93198 * 18 17 16 20 20 O 1.21282 * 120.00089 * 239.93515 * 18 17 16 21 21 C 1.53040 * 109.53739 * 61.36728 * 17 16 15 22 22 C 1.46930 * 120.62893 * 355.33895 * 14 12 2 23 23 H 1.08997 * 109.47187 * 66.31084 * 1 2 3 24 24 H 1.09002 * 109.47373 * 186.31403 * 1 2 3 25 25 H 1.09000 * 109.46802 * 306.31128 * 1 2 3 26 26 H 0.97004 * 119.99986 * 180.02562 * 7 6 4 27 27 H 1.09003 * 109.58507 * 353.37481 * 15 14 12 28 28 H 1.08999 * 109.58685 * 113.80213 * 15 14 12 29 29 H 1.09003 * 109.49706 * 65.31929 * 16 15 14 30 30 H 1.08999 * 109.49644 * 185.41454 * 16 15 14 31 31 H 1.08998 * 109.46137 * 301.34166 * 17 16 15 32 32 H 0.97007 * 119.99771 * 0.02562 * 19 18 17 33 33 H 0.96997 * 120.00004 * 180.02562 * 19 18 17 34 34 H 1.09000 * 109.49412 * 178.68196 * 21 17 16 35 35 H 1.09004 * 109.52358 * 58.60087 * 21 17 16 36 36 H 1.08995 * 109.58043 * 246.19811 * 22 14 12 37 37 H 1.08995 * 109.58124 * 6.47959 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6992 -0.2395 2.4826 7 7 0.9435 0.8300 2.6034 8 14 2.3214 -1.1207 4.0078 9 1 3.1455 -2.2879 3.6036 10 1 3.1467 -0.1877 4.8164 11 1 1.1661 -1.5869 4.8160 12 6 2.0322 -0.7103 -1.2305 13 8 2.3315 -1.8843 -1.1734 14 7 2.1488 -0.0412 -2.3946 15 6 2.7316 -0.6909 -3.5765 16 6 3.8715 0.1836 -4.1082 17 6 3.3471 1.5985 -4.3633 18 6 4.4575 2.4529 -4.9186 19 7 5.0550 2.1118 -6.0775 20 8 4.8134 3.4474 -4.3225 21 6 2.8467 2.2034 -3.0496 22 6 1.6952 1.3519 -2.5059 23 1 -0.3633 0.4129 -0.9410 24 1 -0.3634 -1.0214 0.1130 25 1 -0.3633 0.6086 0.8281 26 1 0.7095 1.1615 3.4845 27 1 3.1211 -1.6707 -3.3000 28 1 1.9676 -0.8029 -4.3459 29 1 4.6752 0.2204 -3.3728 30 1 4.2492 -0.2379 -5.0398 31 1 2.5271 1.5582 -5.0802 32 1 4.7700 1.3166 -6.5544 33 1 5.7699 2.6615 -6.4347 34 1 2.4950 3.2197 -3.2277 35 1 3.6598 2.2218 -2.3239 36 1 0.8467 1.4064 -3.1879 37 1 1.3985 1.7191 -1.5235 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261661069.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:24:05 Heat of formation + Delta-G solvation = -89.166733 kcal Electronic energy + Delta-G solvation = -19462.490423 eV Core-core repulsion = 16432.031891 eV Total energy + Delta-G solvation = -3030.458531 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.24614 -38.99247 -36.53472 -33.98279 -33.76246 -32.37464 -31.14339 -29.99667 -26.00078 -25.15413 -23.39013 -22.55200 -21.18588 -19.94997 -18.49651 -17.58484 -16.82234 -16.33207 -15.89252 -15.25476 -14.94514 -14.66210 -14.36025 -14.07010 -13.68120 -13.34255 -12.92756 -12.65478 -12.33653 -12.13725 -11.81890 -11.32753 -11.19916 -10.96620 -10.70597 -10.68145 -10.63460 -10.54962 -10.22767 -9.99807 -9.89838 -9.85360 -8.93891 -8.56985 -8.28632 -8.08906 -6.01845 -4.04295 2.52752 3.33785 3.35942 3.41197 3.48181 3.64689 3.73276 4.48433 4.58659 4.72611 4.75276 5.17662 5.21601 5.31837 5.40320 5.48667 5.65948 5.78027 5.81275 5.94426 6.08929 6.12221 6.30882 6.42525 6.59836 6.68109 6.85862 6.99560 7.10732 7.14308 7.47606 7.77753 7.98852 8.10130 8.12699 8.39375 9.01601 9.22243 9.60466 11.06180 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.031373 B = 0.005271 C = 0.005102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.264729 B = 5310.859907 C = 5487.137800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.030 3.970 3 H 0.049 0.951 4 C -0.499 4.499 5 H 0.069 0.931 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.525 3.475 13 O -0.548 6.548 14 N -0.628 5.628 15 C 0.113 3.887 16 C -0.124 4.124 17 C -0.106 4.106 18 C 0.521 3.479 19 N -0.859 5.859 20 O -0.540 6.540 21 C -0.116 4.116 22 C 0.108 3.892 23 H 0.012 0.988 24 H 0.035 0.965 25 H 0.090 0.910 26 H 0.260 0.740 27 H 0.092 0.908 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.098 0.902 32 H 0.400 0.600 33 H 0.398 0.602 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.060 0.940 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.956 2.619 -17.450 17.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.009 3.991 3 H 0.067 0.933 4 C -0.538 4.538 5 H 0.088 0.912 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.317 3.683 13 O -0.424 6.424 14 N -0.364 5.364 15 C -0.011 4.011 16 C -0.162 4.162 17 C -0.128 4.128 18 C 0.306 3.694 19 N -0.423 5.423 20 O -0.416 6.416 21 C -0.155 4.155 22 C -0.015 4.015 23 H 0.031 0.969 24 H 0.054 0.946 25 H 0.108 0.892 26 H 0.070 0.930 27 H 0.110 0.890 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.116 0.884 32 H 0.229 0.771 33 H 0.229 0.771 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.079 0.921 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 3.125 2.678 -16.719 17.218 hybrid contribution 0.502 -0.476 0.234 0.731 sum 3.627 2.202 -16.484 17.022 Atomic orbital electron populations 1.21706 0.96180 1.01073 0.99666 1.18903 0.94280 0.96672 0.89232 0.93282 1.21111 1.31146 1.12452 0.89082 0.91242 1.24929 0.95093 0.95042 0.99050 1.69888 1.37085 1.23011 1.23444 0.86416 0.78639 0.79759 0.82555 1.19625 1.21046 1.21003 1.22046 0.75160 0.87159 0.83970 1.90519 1.50060 1.17013 1.84803 1.48381 1.63659 1.13362 1.11015 1.21376 0.94400 0.97280 0.88033 1.21930 0.99460 0.93182 1.01661 1.21357 0.96538 0.95445 0.99437 1.20798 0.83088 0.85278 0.80187 1.43921 1.41093 1.31593 1.25658 1.90752 1.64453 1.27384 1.59010 1.21781 0.99525 0.99018 0.95147 1.21767 0.95247 0.81138 1.03336 0.96928 0.94589 0.89160 0.93000 0.89000 0.92303 0.90795 0.90963 0.88402 0.77131 0.77126 0.90220 0.90429 0.92146 0.87777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 8.62 37.16 0.32 -2.69 16 2 C 0.03 0.75 1.77 -92.93 -0.16 0.59 16 3 H 0.05 1.25 6.51 -51.93 -0.34 0.91 16 4 C -0.50 -14.26 8.33 -34.44 -0.29 -14.54 16 5 H 0.07 2.10 7.02 -52.49 -0.37 1.73 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 7 N -0.89 -25.17 11.39 55.43 0.63 -24.54 16 8 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 9 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 C 0.52 12.09 6.80 -10.99 -0.07 12.02 16 13 O -0.55 -14.33 15.23 5.55 0.08 -14.24 16 14 N -0.63 -11.08 2.97 -172.77 -0.51 -11.59 16 15 C 0.11 1.57 6.42 -3.71 -0.02 1.55 16 16 C -0.12 -1.37 5.27 -26.61 -0.14 -1.51 16 17 C -0.11 -1.15 2.49 -91.73 -0.23 -1.38 16 18 C 0.52 6.05 7.43 -10.98 -0.08 5.96 16 19 N -0.86 -6.16 8.76 31.22 0.27 -5.88 16 20 O -0.54 -8.75 16.82 5.56 0.09 -8.65 16 21 C -0.12 -1.57 4.65 -26.61 -0.12 -1.70 16 22 C 0.11 1.61 5.78 -3.71 -0.02 1.59 16 23 H 0.01 0.24 7.39 -51.93 -0.38 -0.15 16 24 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.09 2.28 6.27 -51.93 -0.33 1.96 16 26 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 27 H 0.09 1.46 7.03 -51.93 -0.37 1.09 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.07 0.55 7.52 -51.93 -0.39 0.16 16 31 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.40 1.69 8.23 -40.82 -0.34 1.35 16 33 H 0.40 2.49 8.93 -40.82 -0.36 2.12 16 34 H 0.08 1.02 8.07 -51.93 -0.42 0.60 16 35 H 0.08 1.25 8.13 -51.93 -0.42 0.82 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.10 1.75 5.15 -51.93 -0.27 1.48 16 LS Contribution 298.13 15.07 4.49 4.49 Total: -1.00 -34.34 298.13 -6.11 -40.45 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -5.23 Total: 1.59 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -0.92 Total: 1.46 kcal Atomic # 7 Polarization: -42.40 SS G_CDS: 0.39 Total: -42.01 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: 0.18 Total: -22.89 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -34.34 -6.11 -40.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261661069.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.719 kcal (2) G-P(sol) polarization free energy of solvation -34.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds