Wall clock time and date at job start Sun Mar 29 2020 23:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47288 * 2 1 4 4 C 1.50698 * 109.47273 * 120.00460 * 2 1 3 5 5 H 1.08000 * 120.00067 * 119.99414 * 4 2 1 6 6 C 1.37874 * 119.99853 * 300.00185 * 4 2 1 7 7 N 1.31514 * 120.00100 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99938 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47087 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.46881 * 119.99585 * 8 6 4 11 11 H 1.48498 * 109.47135 * 239.99251 * 8 6 4 12 12 C 1.50700 * 109.46711 * 240.00411 * 2 1 3 13 13 O 1.21289 * 120.00027 * 264.36807 * 12 2 1 14 14 N 1.34775 * 120.00389 * 84.36658 * 12 2 1 15 15 C 1.46924 * 120.63357 * 175.35695 * 14 12 2 16 16 C 1.53192 * 108.77787 * 233.59035 * 15 14 12 17 17 C 1.53039 * 109.30904 * 305.36354 * 16 15 14 18 18 C 1.50707 * 109.45803 * 181.38544 * 17 16 15 19 19 N 1.34775 * 120.00111 * 59.93198 * 18 17 16 20 20 O 1.21282 * 120.00089 * 239.93515 * 18 17 16 21 21 C 1.53040 * 109.53739 * 61.36728 * 17 16 15 22 22 C 1.46930 * 120.62893 * 355.33895 * 14 12 2 23 23 H 1.08997 * 109.47187 * 66.31084 * 1 2 3 24 24 H 1.09002 * 109.47373 * 186.31403 * 1 2 3 25 25 H 1.09000 * 109.46802 * 306.31128 * 1 2 3 26 26 H 0.97004 * 119.99986 * 180.02562 * 7 6 4 27 27 H 1.09003 * 109.58507 * 353.37481 * 15 14 12 28 28 H 1.08999 * 109.58685 * 113.80213 * 15 14 12 29 29 H 1.09003 * 109.49706 * 65.31929 * 16 15 14 30 30 H 1.08999 * 109.49644 * 185.41454 * 16 15 14 31 31 H 1.08998 * 109.46137 * 301.34166 * 17 16 15 32 32 H 0.97007 * 119.99771 * 0.02562 * 19 18 17 33 33 H 0.96997 * 120.00004 * 180.02562 * 19 18 17 34 34 H 1.09000 * 109.49412 * 178.68196 * 21 17 16 35 35 H 1.09004 * 109.52358 * 58.60087 * 21 17 16 36 36 H 1.08995 * 109.58043 * 246.19811 * 22 14 12 37 37 H 1.08995 * 109.58124 * 6.47959 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6992 -0.2395 2.4826 7 7 0.9435 0.8300 2.6034 8 14 2.3214 -1.1207 4.0078 9 1 3.1455 -2.2879 3.6036 10 1 3.1467 -0.1877 4.8164 11 1 1.1661 -1.5869 4.8160 12 6 2.0322 -0.7103 -1.2305 13 8 2.3315 -1.8843 -1.1734 14 7 2.1488 -0.0412 -2.3946 15 6 2.7316 -0.6909 -3.5765 16 6 3.8715 0.1836 -4.1082 17 6 3.3471 1.5985 -4.3633 18 6 4.4575 2.4529 -4.9186 19 7 5.0550 2.1118 -6.0775 20 8 4.8134 3.4474 -4.3225 21 6 2.8467 2.2034 -3.0496 22 6 1.6952 1.3519 -2.5059 23 1 -0.3633 0.4129 -0.9410 24 1 -0.3634 -1.0214 0.1130 25 1 -0.3633 0.6086 0.8281 26 1 0.7095 1.1615 3.4845 27 1 3.1211 -1.6707 -3.3000 28 1 1.9676 -0.8029 -4.3459 29 1 4.6752 0.2204 -3.3728 30 1 4.2492 -0.2379 -5.0398 31 1 2.5271 1.5582 -5.0802 32 1 4.7700 1.3166 -6.5544 33 1 5.7699 2.6615 -6.4347 34 1 2.4950 3.2197 -3.2277 35 1 3.6598 2.2218 -2.3239 36 1 0.8467 1.4064 -3.1879 37 1 1.3985 1.7191 -1.5235 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261661069.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:24:04 Heat of formation + Delta-G solvation = -115.776370 kcal Electronic energy + Delta-G solvation = -19463.644303 eV Core-core repulsion = 16432.031891 eV Total energy + Delta-G solvation = -3031.612412 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.41170 -40.36440 -37.92644 -35.84432 -34.83522 -33.66792 -32.62602 -31.59503 -27.26404 -27.24283 -24.75390 -23.93359 -22.46899 -21.03182 -19.91161 -18.59627 -18.29923 -17.60803 -17.56275 -16.90970 -16.24142 -16.05275 -15.85829 -15.11448 -14.95055 -14.70587 -14.60031 -14.20056 -13.80597 -13.49685 -13.21660 -12.95604 -12.85453 -12.64868 -12.58831 -12.28880 -12.14017 -12.06478 -11.73646 -11.64039 -11.02107 -10.91176 -10.62008 -10.59392 -10.21273 -9.51450 -8.16293 -6.26125 1.38397 1.40079 1.53185 1.64628 1.91209 2.22096 2.45785 2.63564 3.13542 3.64482 3.72058 3.90548 4.08627 4.19109 4.33272 4.37410 4.49937 4.69832 4.74904 4.77774 4.88764 4.89916 4.93171 5.02763 5.06583 5.13132 5.34092 5.46741 5.69676 5.78127 5.93787 5.94335 6.19068 6.49844 6.58649 6.80275 7.38678 7.39110 7.51128 8.90182 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.031373 B = 0.005271 C = 0.005102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.264729 B = 5310.859907 C = 5487.137800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.026 3.974 3 H 0.040 0.960 4 C -0.529 4.529 5 H 0.042 0.958 6 C 0.021 3.979 7 N -0.909 5.909 8 Si 0.955 3.045 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.273 1.273 12 C 0.521 3.479 13 O -0.591 6.591 14 N -0.620 5.620 15 C 0.107 3.893 16 C -0.114 4.114 17 C -0.099 4.099 18 C 0.521 3.479 19 N -0.834 5.834 20 O -0.595 6.595 21 C -0.112 4.112 22 C 0.106 3.894 23 H 0.048 0.952 24 H 0.019 0.981 25 H 0.070 0.930 26 H 0.265 0.735 27 H 0.069 0.931 28 H 0.098 0.902 29 H 0.043 0.957 30 H 0.119 0.881 31 H 0.139 0.861 32 H 0.419 0.581 33 H 0.406 0.594 34 H 0.089 0.911 35 H 0.040 0.960 36 H 0.100 0.900 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.645 2.808 -19.926 20.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.005 3.995 3 H 0.058 0.942 4 C -0.567 4.567 5 H 0.060 0.940 6 C -0.179 4.179 7 N -0.548 5.548 8 Si 0.780 3.220 9 H -0.205 1.205 10 H -0.199 1.199 11 H -0.198 1.198 12 C 0.312 3.688 13 O -0.471 6.471 14 N -0.354 5.354 15 C -0.015 4.015 16 C -0.152 4.152 17 C -0.120 4.120 18 C 0.306 3.694 19 N -0.398 5.398 20 O -0.475 6.475 21 C -0.151 4.151 22 C -0.016 4.016 23 H 0.067 0.933 24 H 0.038 0.962 25 H 0.089 0.911 26 H 0.074 0.926 27 H 0.087 0.913 28 H 0.116 0.884 29 H 0.062 0.938 30 H 0.137 0.863 31 H 0.156 0.844 32 H 0.251 0.749 33 H 0.238 0.762 34 H 0.107 0.893 35 H 0.059 0.941 36 H 0.118 0.882 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.816 2.880 -19.280 19.696 hybrid contribution 0.619 -0.497 0.914 1.210 sum 3.435 2.383 -18.366 18.836 Atomic orbital electron populations 1.21499 0.95107 0.99777 1.00766 1.18809 0.95198 0.95861 0.89642 0.94233 1.21255 1.31821 1.12315 0.91314 0.93964 1.25584 0.95167 0.95727 1.01373 1.69961 1.37145 1.23465 1.24278 0.85554 0.78398 0.78575 0.79435 1.20472 1.19893 1.19836 1.21582 0.75423 0.86628 0.85159 1.90487 1.52292 1.18575 1.85734 1.48322 1.62303 1.14185 1.10552 1.21697 0.96266 0.96460 0.87109 1.21875 0.97395 0.93100 1.02833 1.21320 0.97591 0.94453 0.98626 1.20872 0.83112 0.84577 0.80824 1.43706 1.40140 1.31907 1.24070 1.90744 1.66113 1.29835 1.60851 1.21673 0.97832 0.99580 0.95969 1.21941 0.97010 0.79482 1.03190 0.93295 0.96200 0.91118 0.92559 0.91265 0.88355 0.93798 0.86273 0.84362 0.74915 0.76233 0.89299 0.94084 0.88182 0.90242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.39 8.62 71.98 0.62 -4.77 16 2 C 0.03 1.34 1.77 -12.29 -0.02 1.32 16 3 H 0.04 2.10 6.51 -2.39 -0.02 2.08 16 4 C -0.53 -31.35 8.33 25.60 0.21 -31.14 16 5 H 0.04 2.68 7.02 -2.91 -0.02 2.66 16 6 C 0.02 1.19 5.30 84.65 0.45 1.64 16 7 N -0.91 -51.81 11.39 21.45 0.24 -51.57 16 8 Si 0.95 45.70 29.54 68.60 2.03 47.73 16 9 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 10 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 11 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 12 C 0.52 24.51 6.80 87.66 0.60 25.11 16 13 O -0.59 -31.93 15.23 -3.06 -0.05 -31.98 16 14 N -0.62 -21.27 2.97 -818.91 -2.43 -23.71 16 15 C 0.11 2.71 6.42 86.36 0.55 3.26 16 16 C -0.11 -2.17 5.27 30.67 0.16 -2.01 16 17 C -0.10 -1.81 2.49 -11.51 -0.03 -1.84 16 18 C 0.52 10.72 7.43 87.66 0.65 11.37 16 19 N -0.83 -8.84 8.76 -173.53 -1.52 -10.36 16 20 O -0.60 -18.80 16.82 -3.04 -0.05 -18.85 16 21 C -0.11 -2.89 4.65 30.67 0.14 -2.75 16 22 C 0.11 2.98 5.78 86.36 0.50 3.48 16 23 H 0.05 1.90 7.39 -2.39 -0.02 1.88 16 24 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.07 3.62 6.27 -2.39 -0.01 3.61 16 26 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 27 H 0.07 2.13 7.03 -2.39 -0.02 2.11 16 28 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.04 1.12 8.14 -2.39 -0.02 1.11 16 30 H 0.12 1.20 7.52 -2.39 -0.02 1.18 16 31 H 0.14 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.42 1.41 8.23 -92.70 -0.76 0.65 16 33 H 0.41 3.76 8.93 -92.71 -0.83 2.94 16 34 H 0.09 2.15 8.07 -2.39 -0.02 2.13 16 35 H 0.04 1.35 8.13 -2.39 -0.02 1.33 16 36 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.08 2.66 5.15 -2.39 -0.01 2.65 16 Total: -1.00 -79.14 298.13 1.56 -77.57 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -0.49 Total: 7.48 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: 3.84 Total: 3.67 kcal Atomic # 7 Polarization: -81.92 SS G_CDS: -3.71 Total: -85.63 kcal Atomic # 8 Polarization: -50.73 SS G_CDS: -0.10 Total: -50.83 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -79.14 1.56 -77.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261661069.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.204 kcal (2) G-P(sol) polarization free energy of solvation -79.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds