Wall clock time and date at job start Sun Mar 29 2020 23:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34782 * 120.00069 * 2 1 4 4 O 1.21275 * 119.99725 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00102 * 179.97438 * 3 2 1 6 6 H 1.08999 * 110.88455 * 300.69455 * 5 3 2 7 7 C 1.55155 * 111.00622 * 64.57465 * 5 3 2 8 8 C 1.54321 * 102.94569 * 153.57647 * 7 5 3 9 9 N 1.47024 * 107.26778 * 337.81068 * 8 7 5 10 10 C 1.34779 * 125.64585 * 178.90443 * 9 8 7 11 11 O 1.21288 * 119.99900 * 174.73794 * 10 9 8 12 12 C 1.50693 * 120.00445 * 354.74181 * 10 9 8 13 13 H 1.09010 * 109.46896 * 34.22055 * 12 10 9 14 14 C 1.53004 * 109.47340 * 154.21665 * 12 10 9 15 15 C 1.50701 * 109.47326 * 274.22154 * 12 10 9 16 16 H 1.07995 * 119.99828 * 359.97438 * 15 12 10 17 17 C 1.37872 * 120.00231 * 179.97438 * 15 12 10 18 18 N 1.31520 * 120.00192 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 120.00131 * 179.97438 * 17 15 12 20 20 H 1.48503 * 109.46916 * 90.00140 * 19 17 15 21 21 H 1.48504 * 109.47302 * 209.99843 * 19 17 15 22 22 H 1.48497 * 109.47227 * 330.00019 * 19 17 15 23 23 C 1.47466 * 108.72370 * 358.97195 * 9 8 7 24 24 H 1.09007 * 109.46886 * 60.00400 * 1 2 3 25 25 H 1.09001 * 109.47035 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47510 * 300.00839 * 1 2 3 27 27 H 0.97004 * 120.00223 * 179.97438 * 2 1 3 28 28 H 1.09002 * 110.72258 * 271.93926 * 7 5 3 29 29 H 1.09006 * 110.72084 * 35.03479 * 7 5 3 30 30 H 1.09000 * 109.88116 * 97.22285 * 8 7 5 31 31 H 1.09002 * 109.88869 * 218.39315 * 8 7 5 32 32 H 1.09001 * 109.46592 * 65.72960 * 14 12 10 33 33 H 1.09006 * 109.47064 * 185.72355 * 14 12 10 34 34 H 1.08991 * 109.47504 * 305.72902 * 14 12 10 35 35 H 0.96992 * 120.00210 * 179.97438 * 18 17 15 36 36 H 1.08996 * 110.34985 * 265.25467 * 23 9 8 37 37 H 1.09004 * 110.40187 * 142.91657 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1672 0.0006 6 1 4.0341 0.6476 0.8766 7 6 4.2025 0.5451 -1.3072 8 6 5.5839 1.2182 -1.4496 9 7 5.5432 2.4663 -0.6735 10 6 6.5642 3.3340 -0.5275 11 8 6.3904 4.3819 0.0580 12 6 7.9216 3.0024 -1.0917 13 1 7.8026 2.4371 -2.0162 14 6 8.6842 4.2971 -1.3803 15 6 8.6924 2.1771 -0.0939 16 1 8.2443 1.9189 0.8542 17 6 9.9697 1.7516 -0.3913 18 7 10.5156 2.0664 -1.5457 19 14 10.9254 0.7291 0.8458 20 1 10.6573 -0.7122 0.6091 21 1 12.3782 0.9944 0.6902 22 1 10.5005 1.0922 2.2216 23 6 4.2011 2.6111 -0.0799 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5140 0.8899 27 1 1.9500 -0.8401 0.0004 28 1 4.3086 -0.5350 -1.2058 29 1 3.5618 0.7904 -2.1542 30 1 6.3589 0.5613 -1.0547 31 1 5.7819 1.4401 -2.4983 32 1 8.8921 4.8128 -0.4428 33 1 9.6231 4.0617 -1.8815 34 1 8.0807 4.9389 -2.0220 35 1 11.4143 1.7674 -1.7548 36 1 3.5680 3.2259 -0.7196 37 1 4.2715 3.0466 0.9169 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328418209.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:24:19 Heat of formation + Delta-G solvation = -79.525898 kcal Electronic energy + Delta-G solvation = -19169.084834 eV Core-core repulsion = 16139.044360 eV Total energy + Delta-G solvation = -3030.040473 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.25182 -38.82055 -36.58450 -34.78187 -33.75725 -31.55367 -30.25827 -28.90946 -27.13294 -25.20126 -23.96867 -22.03496 -21.47276 -20.12255 -18.44477 -17.50307 -16.70273 -16.21129 -15.93560 -15.43288 -15.00226 -14.79717 -14.09380 -13.62158 -13.48094 -13.47813 -12.76757 -12.65852 -12.54177 -12.30605 -11.87606 -11.55473 -11.48456 -11.16896 -10.98433 -10.84690 -10.79618 -10.48684 -10.26230 -10.10694 -9.89010 -9.35132 -9.02819 -8.64711 -8.38044 -7.95546 -6.11338 -4.18719 2.50241 2.97163 3.24144 3.32038 3.36148 3.74861 3.79460 4.38514 4.45999 4.51927 4.78565 4.95459 5.17468 5.20678 5.24886 5.42805 5.47200 5.54052 5.68992 5.91318 6.07752 6.13685 6.21793 6.28399 6.30402 6.83338 6.96638 7.03421 7.15771 7.24941 7.58390 7.77074 7.95203 8.05856 8.18331 8.35691 8.81116 9.22477 9.46423 10.95243 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.029637 B = 0.005220 C = 0.004776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.546234 B = 5362.681721 C = 5861.093537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.737 5.737 3 C 0.527 3.473 4 O -0.534 6.534 5 C -0.128 4.128 6 H 0.112 0.888 7 C -0.119 4.119 8 C 0.109 3.891 9 N -0.627 5.627 10 C 0.543 3.457 11 O -0.561 6.561 12 C 0.035 3.965 13 H 0.045 0.955 14 C -0.121 4.121 15 C -0.508 4.508 16 H 0.057 0.943 17 C 0.067 3.933 18 N -0.885 5.885 19 Si 0.899 3.101 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.273 1.273 23 C 0.127 3.873 24 H 0.059 0.941 25 H 0.074 0.926 26 H 0.058 0.942 27 H 0.403 0.597 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.038 0.962 33 H 0.084 0.916 34 H 0.010 0.990 35 H 0.263 0.737 36 H 0.072 0.928 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.702 -9.647 -0.357 17.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.389 5.389 3 C 0.313 3.687 4 O -0.410 6.410 5 C -0.150 4.150 6 H 0.130 0.870 7 C -0.157 4.157 8 C -0.014 4.014 9 N -0.363 5.363 10 C 0.336 3.664 11 O -0.439 6.439 12 C 0.014 3.986 13 H 0.063 0.937 14 C -0.179 4.179 15 C -0.547 4.547 16 H 0.075 0.925 17 C -0.135 4.135 18 N -0.523 5.523 19 Si 0.726 3.274 20 H -0.206 1.206 21 H -0.210 1.210 22 H -0.198 1.198 23 C 0.004 3.996 24 H 0.077 0.923 25 H 0.093 0.907 26 H 0.077 0.923 27 H 0.237 0.763 28 H 0.104 0.896 29 H 0.095 0.905 30 H 0.102 0.898 31 H 0.086 0.914 32 H 0.058 0.942 33 H 0.102 0.898 34 H 0.029 0.971 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.991 -8.257 -0.146 17.115 hybrid contribution 0.668 -1.152 0.664 1.488 sum -14.323 -9.409 0.518 17.145 Atomic orbital electron populations 1.21525 0.79741 1.02076 1.02339 1.45806 1.07671 1.08829 1.76605 1.20425 0.89604 0.83515 0.75185 1.90719 1.70317 1.31315 1.48629 1.22510 0.91191 1.00097 1.01168 0.87009 1.22664 0.96820 1.00429 0.95813 1.21905 0.96412 0.86434 0.96664 1.48627 1.11580 1.23691 1.52437 1.21779 0.85561 0.81161 0.77929 1.90552 1.84082 1.25028 1.44217 1.18882 0.86219 0.96146 0.97307 0.93694 1.21590 1.01227 0.95364 0.99740 1.20725 0.99558 1.32470 1.01910 0.92459 1.24903 0.97192 0.95985 0.95448 1.69899 1.15486 1.45160 1.21764 0.86485 0.79136 0.80161 0.81617 1.20566 1.21042 1.19824 1.21817 0.84415 0.93391 1.00019 0.92258 0.90734 0.92290 0.76332 0.89551 0.90546 0.89821 0.91402 0.94233 0.89759 0.97105 0.92702 0.91011 0.90593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.63 10.70 59.84 0.64 1.27 16 2 N -0.74 -6.24 5.70 -67.08 -0.38 -6.62 16 3 C 0.53 6.57 7.15 -10.98 -0.08 6.49 16 4 O -0.53 -8.89 15.76 5.56 0.09 -8.80 16 5 C -0.13 -1.59 3.43 -89.63 -0.31 -1.89 16 6 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 7 C -0.12 -1.30 6.40 -24.90 -0.16 -1.46 16 8 C 0.11 1.69 6.09 -3.06 -0.02 1.67 16 9 N -0.63 -12.29 3.33 -170.49 -0.57 -12.86 16 10 C 0.54 13.18 6.88 -10.99 -0.08 13.10 16 11 O -0.56 -15.24 16.52 5.55 0.09 -15.15 16 12 C 0.04 0.90 2.20 -92.92 -0.20 0.70 16 13 H 0.05 1.14 7.29 -51.92 -0.38 0.76 16 14 C -0.12 -3.12 8.33 37.16 0.31 -2.81 16 15 C -0.51 -13.69 8.55 -34.44 -0.29 -13.99 16 16 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 17 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 18 N -0.89 -24.24 11.39 55.43 0.63 -23.61 16 19 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 20 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 23 C 0.13 2.19 5.98 -2.51 -0.02 2.18 16 24 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 25 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.40 2.21 8.83 -40.82 -0.36 1.84 16 28 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.08 0.80 8.03 -51.93 -0.42 0.38 16 30 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.07 1.03 8.01 -51.93 -0.42 0.61 16 32 H 0.04 1.05 8.05 -51.93 -0.42 0.63 16 33 H 0.08 2.25 6.25 -51.93 -0.32 1.93 16 34 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 36 H 0.07 1.30 7.45 -51.93 -0.39 0.91 16 37 H 0.08 1.41 8.09 -51.93 -0.42 0.99 16 LS Contribution 309.59 15.07 4.67 4.67 Total: -1.00 -33.71 309.59 -6.41 -40.13 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -5.62 Total: -0.29 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: -0.30 Total: 6.95 kcal Atomic # 7 Polarization: -42.77 SS G_CDS: -0.32 Total: -43.09 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: 0.18 Total: -23.95 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.71 -6.41 -40.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328418209.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.400 kcal (2) G-P(sol) polarization free energy of solvation -33.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds