Wall clock time and date at job start Sun Mar 29 2020 23:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34782 * 120.00069 * 2 1 4 4 O 1.21275 * 119.99725 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00102 * 179.97438 * 3 2 1 6 6 H 1.08999 * 110.88455 * 300.69455 * 5 3 2 7 7 C 1.55155 * 111.00622 * 64.57465 * 5 3 2 8 8 C 1.54321 * 102.94569 * 153.57647 * 7 5 3 9 9 N 1.47024 * 107.26778 * 337.81068 * 8 7 5 10 10 C 1.34779 * 125.64585 * 178.90443 * 9 8 7 11 11 O 1.21288 * 119.99900 * 174.73794 * 10 9 8 12 12 C 1.50693 * 120.00445 * 354.74181 * 10 9 8 13 13 H 1.09010 * 109.46896 * 34.22055 * 12 10 9 14 14 C 1.53004 * 109.47340 * 154.21665 * 12 10 9 15 15 C 1.50701 * 109.47326 * 274.22154 * 12 10 9 16 16 H 1.07995 * 119.99828 * 359.97438 * 15 12 10 17 17 C 1.37872 * 120.00231 * 179.97438 * 15 12 10 18 18 N 1.31520 * 120.00192 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 120.00131 * 179.97438 * 17 15 12 20 20 H 1.48503 * 109.46916 * 90.00140 * 19 17 15 21 21 H 1.48504 * 109.47302 * 209.99843 * 19 17 15 22 22 H 1.48497 * 109.47227 * 330.00019 * 19 17 15 23 23 C 1.47466 * 108.72370 * 358.97195 * 9 8 7 24 24 H 1.09007 * 109.46886 * 60.00400 * 1 2 3 25 25 H 1.09001 * 109.47035 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47510 * 300.00839 * 1 2 3 27 27 H 0.97004 * 120.00223 * 179.97438 * 2 1 3 28 28 H 1.09002 * 110.72258 * 271.93926 * 7 5 3 29 29 H 1.09006 * 110.72084 * 35.03479 * 7 5 3 30 30 H 1.09000 * 109.88116 * 97.22285 * 8 7 5 31 31 H 1.09002 * 109.88869 * 218.39315 * 8 7 5 32 32 H 1.09001 * 109.46592 * 65.72960 * 14 12 10 33 33 H 1.09006 * 109.47064 * 185.72355 * 14 12 10 34 34 H 1.08991 * 109.47504 * 305.72902 * 14 12 10 35 35 H 0.96992 * 120.00210 * 179.97438 * 18 17 15 36 36 H 1.08996 * 110.34985 * 265.25467 * 23 9 8 37 37 H 1.09004 * 110.40187 * 142.91657 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1672 0.0006 6 1 4.0341 0.6476 0.8766 7 6 4.2025 0.5451 -1.3072 8 6 5.5839 1.2182 -1.4496 9 7 5.5432 2.4663 -0.6735 10 6 6.5642 3.3340 -0.5275 11 8 6.3904 4.3819 0.0580 12 6 7.9216 3.0024 -1.0917 13 1 7.8026 2.4371 -2.0162 14 6 8.6842 4.2971 -1.3803 15 6 8.6924 2.1771 -0.0939 16 1 8.2443 1.9189 0.8542 17 6 9.9697 1.7516 -0.3913 18 7 10.5156 2.0664 -1.5457 19 14 10.9254 0.7291 0.8458 20 1 10.6573 -0.7122 0.6091 21 1 12.3782 0.9944 0.6902 22 1 10.5005 1.0922 2.2216 23 6 4.2011 2.6111 -0.0799 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5140 0.8899 27 1 1.9500 -0.8401 0.0004 28 1 4.3086 -0.5350 -1.2058 29 1 3.5618 0.7904 -2.1542 30 1 6.3589 0.5613 -1.0547 31 1 5.7819 1.4401 -2.4983 32 1 8.8921 4.8128 -0.4428 33 1 9.6231 4.0617 -1.8815 34 1 8.0807 4.9389 -2.0220 35 1 11.4143 1.7674 -1.7548 36 1 3.5680 3.2259 -0.7196 37 1 4.2715 3.0466 0.9169 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328418209.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:24:19 Heat of formation + Delta-G solvation = -104.410957 kcal Electronic energy + Delta-G solvation = -19170.163931 eV Core-core repulsion = 16139.044360 eV Total energy + Delta-G solvation = -3031.119571 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.44842 -40.35022 -38.08598 -35.80949 -35.64418 -33.06304 -32.15100 -30.14723 -28.05542 -27.26442 -25.47342 -23.21621 -23.07864 -21.10790 -20.08405 -18.64553 -18.55760 -17.95609 -16.90556 -16.76401 -16.50190 -16.13913 -15.81071 -15.20956 -14.58609 -14.56164 -14.35096 -13.96725 -13.71917 -13.53850 -13.48020 -13.06832 -12.88818 -12.77522 -12.74634 -12.57886 -12.27313 -12.21905 -12.10580 -11.83818 -11.11006 -10.94805 -10.63508 -10.38648 -10.13661 -9.56994 -8.15799 -6.30907 1.43521 1.47009 1.53847 1.56180 1.81916 2.01168 2.41124 2.48924 3.13692 3.29381 3.50416 3.85833 4.13633 4.23064 4.31534 4.38513 4.52838 4.64029 4.67531 4.74023 4.84225 4.87319 4.95334 4.95924 4.99007 5.07386 5.17075 5.41072 5.43381 5.52228 5.68445 5.84008 6.13354 6.51714 6.62202 6.71554 7.22088 7.32432 7.41248 8.90592 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.029637 B = 0.005220 C = 0.004776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.546234 B = 5362.681721 C = 5861.093537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.715 5.715 3 C 0.528 3.472 4 O -0.584 6.584 5 C -0.114 4.114 6 H 0.132 0.868 7 C -0.100 4.100 8 C 0.098 3.902 9 N -0.624 5.624 10 C 0.536 3.464 11 O -0.603 6.603 12 C 0.035 3.965 13 H 0.044 0.956 14 C -0.112 4.112 15 C -0.526 4.526 16 H 0.047 0.953 17 C 0.028 3.972 18 N -0.908 5.908 19 Si 0.963 3.037 20 H -0.262 1.262 21 H -0.282 1.282 22 H -0.278 1.278 23 C 0.121 3.879 24 H 0.049 0.951 25 H 0.114 0.886 26 H 0.047 0.953 27 H 0.422 0.578 28 H 0.133 0.867 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.020 0.980 33 H 0.073 0.927 34 H 0.020 0.980 35 H 0.267 0.733 36 H 0.059 0.941 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.541 -12.876 -0.324 20.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.367 5.367 3 C 0.314 3.686 4 O -0.464 6.464 5 C -0.136 4.136 6 H 0.150 0.850 7 C -0.137 4.137 8 C -0.024 4.024 9 N -0.358 5.358 10 C 0.328 3.672 11 O -0.485 6.485 12 C 0.014 3.986 13 H 0.062 0.938 14 C -0.170 4.170 15 C -0.564 4.564 16 H 0.065 0.935 17 C -0.173 4.173 18 N -0.546 5.546 19 Si 0.787 3.213 20 H -0.187 1.187 21 H -0.208 1.208 22 H -0.203 1.203 23 C -0.002 4.002 24 H 0.068 0.932 25 H 0.133 0.867 26 H 0.066 0.934 27 H 0.259 0.741 28 H 0.151 0.849 29 H 0.105 0.895 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.039 0.961 33 H 0.092 0.908 34 H 0.039 0.961 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.865 -11.588 -0.140 19.647 hybrid contribution 0.886 -0.158 0.617 1.091 sum -14.979 -11.746 0.478 19.041 Atomic orbital electron populations 1.21700 0.78605 1.04408 1.01371 1.45658 1.08383 1.08346 1.74341 1.20346 0.89388 0.83921 0.74934 1.90714 1.71032 1.33325 1.51327 1.22396 0.91489 0.96619 1.03051 0.85004 1.22684 0.93482 1.02484 0.95089 1.22220 0.99431 0.84733 0.96031 1.48567 1.11366 1.23993 1.51826 1.21515 0.86357 0.81403 0.77891 1.90517 1.84899 1.26859 1.46205 1.18801 0.87094 0.95538 0.97130 0.93826 1.21465 1.01022 0.95833 0.98724 1.20821 1.00378 1.33355 1.01815 0.93509 1.25623 0.97746 0.96807 0.97131 1.69986 1.15886 1.45626 1.23068 0.85491 0.77553 0.79379 0.78836 1.18695 1.20753 1.20322 1.21883 0.83103 0.96907 0.98280 0.93184 0.86711 0.93411 0.74071 0.84868 0.89472 0.90420 0.91201 0.96102 0.90819 0.96095 0.92337 0.92242 0.92770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.95 10.70 127.77 1.37 2.32 16 2 N -0.72 -9.57 5.70 -484.52 -2.76 -12.34 16 3 C 0.53 12.08 7.15 87.66 0.63 12.70 16 4 O -0.58 -19.26 15.76 -3.01 -0.05 -19.30 16 5 C -0.11 -2.57 3.43 -10.15 -0.03 -2.60 16 6 H 0.13 2.50 8.14 -2.39 -0.02 2.48 16 7 C -0.10 -1.81 6.40 31.78 0.20 -1.61 16 8 C 0.10 2.88 6.09 86.73 0.53 3.41 16 9 N -0.62 -24.61 3.33 -811.69 -2.70 -27.32 16 10 C 0.54 26.76 6.88 87.65 0.60 27.36 16 11 O -0.60 -34.10 16.52 -3.05 -0.05 -34.15 16 12 C 0.04 1.84 2.20 -12.29 -0.03 1.81 16 13 H 0.04 2.25 7.29 -2.38 -0.02 2.23 16 14 C -0.11 -5.95 8.33 71.98 0.60 -5.35 16 15 C -0.53 -28.57 8.55 25.60 0.22 -28.35 16 16 H 0.05 2.59 7.74 -2.91 -0.02 2.56 16 17 C 0.03 1.45 5.30 84.65 0.45 1.90 16 18 N -0.91 -49.56 11.39 21.45 0.24 -49.31 16 19 Si 0.96 41.67 29.54 68.60 2.03 43.69 16 20 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 21 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 22 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 23 C 0.12 4.22 5.98 86.85 0.52 4.74 16 24 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 25 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 26 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.42 2.52 8.83 -92.71 -0.82 1.70 16 28 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.09 1.48 8.03 -2.38 -0.02 1.46 16 30 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.07 2.04 8.01 -2.39 -0.02 2.02 16 32 H 0.02 1.12 8.05 -2.39 -0.02 1.10 16 33 H 0.07 4.02 6.25 -2.38 -0.01 4.01 16 34 H 0.02 1.00 8.14 -2.39 -0.02 0.99 16 35 H 0.27 13.76 8.31 -92.71 -0.77 12.99 16 36 H 0.06 2.22 7.45 -2.39 -0.02 2.20 16 37 H 0.05 2.10 8.09 -2.38 -0.02 2.08 16 Total: -1.00 -75.84 309.59 2.01 -73.83 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: 0.25 Total: 8.57 kcal Atomic # 6 Polarization: 11.28 SS G_CDS: 5.05 Total: 16.33 kcal Atomic # 7 Polarization: -83.75 SS G_CDS: -5.22 Total: -88.97 kcal Atomic # 8 Polarization: -53.36 SS G_CDS: -0.10 Total: -53.46 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.69 kcal Total: -75.84 2.01 -73.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328418209.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.583 kcal (2) G-P(sol) polarization free energy of solvation -75.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds