Wall clock time and date at job start Sun Mar 29 2020 23:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21291 * 120.00352 * 2 1 4 4 N 1.34783 * 120.00261 * 180.02562 * 2 1 3 5 5 C 1.46494 * 120.00026 * 180.02562 * 4 2 1 6 6 H 1.08994 * 110.64764 * 31.85436 * 5 4 2 7 7 C 1.55162 * 110.86921 * 268.60658 * 5 4 2 8 8 C 1.55130 * 101.48434 * 205.90061 * 7 5 4 9 9 N 1.47431 * 104.72417 * 37.29815 * 8 7 5 10 10 C 1.34774 * 125.64831 * 155.81423 * 9 8 7 11 11 O 1.21280 * 119.99761 * 179.69330 * 10 9 8 12 12 C 1.50698 * 120.00338 * 359.69209 * 10 9 8 13 13 H 1.09003 * 109.46889 * 300.00448 * 12 10 9 14 14 C 1.53000 * 109.46939 * 59.99981 * 12 10 9 15 15 C 1.50694 * 109.47166 * 179.97438 * 12 10 9 16 16 H 1.08000 * 120.00563 * 0.02562 * 15 12 10 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 12 10 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.47353 * 269.99586 * 19 17 15 21 21 H 1.48501 * 109.47293 * 30.00037 * 19 17 15 22 22 H 1.48504 * 109.46680 * 149.99835 * 19 17 15 23 23 C 1.47019 * 108.70102 * 335.55288 * 9 8 7 24 24 H 1.08997 * 109.47061 * 240.00035 * 1 2 3 25 25 H 1.08998 * 109.46964 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.47476 * 119.99612 * 1 2 3 27 27 H 0.96996 * 119.99302 * 359.97438 * 4 2 1 28 28 H 1.08994 * 111.00623 * 324.13813 * 7 5 4 29 29 H 1.09002 * 111.00361 * 87.95668 * 7 5 4 30 30 H 1.08994 * 110.49918 * 278.45396 * 8 7 5 31 31 H 1.09003 * 110.34409 * 156.05973 * 8 7 5 32 32 H 1.08997 * 109.47359 * 180.02562 * 14 12 10 33 33 H 1.09007 * 109.47356 * 300.00035 * 14 12 10 34 34 H 1.09000 * 109.47156 * 59.99760 * 14 12 10 35 35 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 36 36 H 1.09002 * 109.88489 * 120.70144 * 23 9 8 37 37 H 1.09002 * 109.88448 * 241.87468 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6458 -1.1672 0.0000 6 1 4.0299 -0.3012 0.5391 7 6 4.1991 -1.2014 -1.4492 8 6 5.5869 -1.8605 -1.2344 9 7 5.3630 -2.8723 -0.1857 10 6 6.1115 -3.9751 0.0144 11 8 5.8369 -4.7390 0.9155 12 6 7.2897 -4.2589 -0.8813 13 1 6.9476 -4.3563 -1.9116 14 6 8.2933 -3.1082 -0.7838 15 6 7.9526 -5.5410 -0.4482 16 1 7.5599 -6.0953 0.3915 17 6 9.0607 -6.0067 -1.1239 18 7 9.5387 -5.3321 -2.1467 19 14 9.8828 -7.5956 -0.5865 20 1 10.9317 -7.2943 0.4206 21 1 8.8682 -8.5005 0.0110 22 1 10.5022 -8.2552 -1.7640 23 6 4.1916 -2.4758 0.6094 24 1 -0.3633 -0.5138 0.8900 25 1 -0.3633 1.0277 0.0005 26 1 -0.3634 -0.5137 -0.8899 27 1 1.6959 -2.0072 -0.0005 28 1 3.5681 -1.8129 -2.0940 29 1 4.3045 -0.1937 -1.8510 30 1 6.3131 -1.1204 -0.8985 31 1 5.9268 -2.3365 -2.1543 32 1 9.1453 -3.3133 -1.4320 33 1 7.8141 -2.1805 -1.0968 34 1 8.6354 -3.0108 0.2466 35 1 10.3184 -5.6595 -2.6217 36 1 3.4296 -3.2537 0.5602 37 1 4.4864 -2.3076 1.6452 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334440152.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:24:27 Heat of formation + Delta-G solvation = -100.022248 kcal Electronic energy + Delta-G solvation = -19026.019151 eV Core-core repulsion = 15995.089889 eV Total energy + Delta-G solvation = -3030.929262 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.34547 -40.36750 -38.36704 -35.86311 -35.24335 -32.82956 -31.70982 -30.56584 -28.95558 -27.20464 -25.36726 -23.24529 -22.38933 -21.61775 -20.29422 -18.42796 -18.06642 -17.82319 -17.15744 -16.84744 -16.34616 -16.10308 -15.97758 -15.00467 -14.61722 -14.56917 -14.49398 -14.12707 -13.52179 -13.41748 -13.27611 -13.13407 -12.95998 -12.86156 -12.70283 -12.62807 -12.27993 -12.22780 -12.02629 -11.93009 -11.03805 -10.96657 -10.63290 -10.35498 -10.14576 -9.61857 -8.16038 -6.26763 1.40566 1.41247 1.52909 1.64325 1.82875 1.91012 2.38635 2.49774 3.13407 3.36925 3.56025 3.94267 4.03046 4.19186 4.22047 4.26162 4.56307 4.61596 4.69596 4.71327 4.75157 4.80930 4.93486 4.96538 5.00935 5.05420 5.18182 5.38807 5.44659 5.51280 5.72354 5.93907 6.19479 6.53849 6.58783 6.81753 7.25189 7.36330 7.44855 8.89824 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.053842 B = 0.004267 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.913659 B = 6560.063490 C = 6858.259945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.508 3.492 3 O -0.596 6.596 4 N -0.711 5.711 5 C 0.143 3.857 6 H 0.096 0.904 7 C -0.130 4.130 8 C 0.098 3.902 9 N -0.624 5.624 10 C 0.535 3.465 11 O -0.587 6.587 12 C 0.032 3.968 13 H 0.041 0.959 14 C -0.125 4.125 15 C -0.532 4.532 16 H 0.048 0.952 17 C 0.021 3.979 18 N -0.910 5.910 19 Si 0.956 3.044 20 H -0.275 1.275 21 H -0.278 1.278 22 H -0.273 1.273 23 C 0.102 3.898 24 H 0.110 0.890 25 H 0.089 0.911 26 H 0.112 0.888 27 H 0.417 0.583 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.018 0.982 35 H 0.265 0.735 36 H 0.074 0.926 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.374 10.276 -0.066 19.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.298 3.702 3 O -0.477 6.477 4 N -0.364 5.364 5 C 0.037 3.963 6 H 0.114 0.886 7 C -0.169 4.169 8 C -0.024 4.024 9 N -0.360 5.360 10 C 0.327 3.673 11 O -0.466 6.466 12 C 0.011 3.989 13 H 0.059 0.941 14 C -0.183 4.183 15 C -0.570 4.570 16 H 0.066 0.934 17 C -0.178 4.178 18 N -0.549 5.549 19 Si 0.782 3.218 20 H -0.200 1.200 21 H -0.203 1.203 22 H -0.198 1.198 23 C -0.021 4.021 24 H 0.129 0.871 25 H 0.108 0.892 26 H 0.130 0.870 27 H 0.255 0.745 28 H 0.107 0.893 29 H 0.116 0.884 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.037 0.963 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.922 10.529 0.293 19.091 hybrid contribution 0.594 -1.348 0.332 1.510 sum -15.327 9.181 0.625 17.878 Atomic orbital electron populations 1.21929 0.87841 1.06151 1.06508 1.21629 0.92305 0.82509 0.73764 1.90718 1.72156 1.33094 1.51758 1.45951 1.05675 1.09823 1.74950 1.21720 0.81213 0.96699 0.96716 0.88582 1.23194 0.94851 1.02385 0.96428 1.22613 0.98222 0.90308 0.91277 1.48550 1.29901 1.23504 1.34011 1.21400 0.83258 0.78236 0.84454 1.90508 1.71973 1.48821 1.35324 1.18728 0.89843 0.96196 0.94108 0.94090 1.21694 1.00895 0.95859 0.99833 1.21295 1.12837 1.07334 1.15580 0.93394 1.25594 0.97090 1.00297 0.94863 1.69947 1.24398 1.39811 1.20741 0.85586 0.78413 0.79792 0.78043 1.20033 1.20303 1.19840 1.22048 0.88582 0.96153 0.95314 0.87133 0.89202 0.86971 0.74517 0.89292 0.88361 0.90146 0.90036 0.91016 0.92341 0.96281 0.92532 0.90783 0.91946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 10.32 71.23 0.74 -0.66 16 2 C 0.51 9.25 7.94 87.65 0.70 9.95 16 3 O -0.60 -16.87 16.73 -3.06 -0.05 -16.92 16 4 N -0.71 -11.49 5.18 -436.90 -2.26 -13.75 16 5 C 0.14 3.09 3.31 46.19 0.15 3.24 16 6 H 0.10 2.33 7.55 -2.39 -0.02 2.31 16 7 C -0.13 -2.71 6.79 32.07 0.22 -2.49 16 8 C 0.10 2.69 5.14 86.93 0.45 3.14 16 9 N -0.62 -21.83 3.32 -811.33 -2.69 -24.52 16 10 C 0.53 25.14 7.21 87.66 0.63 25.78 16 11 O -0.59 -31.86 15.79 -3.03 -0.05 -31.91 16 12 C 0.03 1.64 1.99 -12.29 -0.02 1.62 16 13 H 0.04 2.16 7.85 -2.39 -0.02 2.14 16 14 C -0.12 -5.78 8.77 71.98 0.63 -5.15 16 15 C -0.53 -31.13 8.37 25.60 0.21 -30.92 16 16 H 0.05 3.00 6.75 -2.91 -0.02 2.98 16 17 C 0.02 1.17 5.30 84.66 0.45 1.62 16 18 N -0.91 -51.04 11.32 21.45 0.24 -50.80 16 19 Si 0.96 44.98 29.54 68.60 2.03 47.01 16 20 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 21 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 22 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 23 C 0.10 2.82 6.62 86.73 0.57 3.39 16 24 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 25 H 0.09 0.86 8.12 -2.39 -0.02 0.84 16 26 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.42 4.46 8.37 -92.71 -0.78 3.69 16 28 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.08 2.09 7.08 -2.39 -0.02 2.07 16 31 H 0.08 2.34 7.34 -2.39 -0.02 2.32 16 32 H 0.07 3.64 6.07 -2.39 -0.01 3.63 16 33 H 0.06 2.19 4.98 -2.38 -0.01 2.18 16 34 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.27 14.07 8.31 -92.71 -0.77 13.29 16 36 H 0.07 1.93 7.72 -2.39 -0.02 1.91 16 37 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -75.02 303.95 2.24 -72.78 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: 0.30 Total: 8.60 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: 4.72 Total: 9.51 kcal Atomic # 7 Polarization: -84.36 SS G_CDS: -4.72 Total: -89.08 kcal Atomic # 8 Polarization: -48.72 SS G_CDS: -0.10 Total: -48.82 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -75.02 2.24 -72.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334440152.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.244 kcal (2) G-P(sol) polarization free energy of solvation -75.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds