Wall clock time and date at job start Sun Mar 29 2020 23:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46813 * 2 1 4 4 N 1.46905 * 109.47102 * 240.00077 * 2 1 3 5 5 C 1.46901 * 110.99870 * 85.00132 * 4 2 1 6 6 C 1.53004 * 109.46916 * 180.02562 * 5 4 2 7 7 C 1.52996 * 109.46700 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.46820 * 179.97438 * 7 6 5 9 9 H 1.08000 * 120.00070 * 0.02562 * 8 7 6 10 10 C 1.37878 * 120.00019 * 179.97438 * 8 7 6 11 11 N 1.31515 * 120.00228 * 0.02562 * 10 8 7 12 12 Si 1.86807 * 120.00068 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.46685 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.46910 * 120.00333 * 12 10 8 15 15 H 1.48502 * 109.47120 * 240.00671 * 12 10 8 16 16 C 1.50702 * 109.47093 * 120.00004 * 2 1 3 17 17 C 1.41379 * 126.80316 * 274.71045 * 16 2 1 18 18 C 1.35448 * 103.98583 * 179.88797 * 17 16 2 19 19 C 1.50694 * 126.77697 * 180.09218 * 18 17 16 20 20 O 1.42905 * 109.46663 * 90.30735 * 19 18 17 21 21 O 1.34041 * 106.44280 * 0.37279 * 18 17 16 22 22 N 1.20921 * 111.57219 * 359.74716 * 21 18 17 23 23 H 1.09003 * 109.46813 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47105 * 300.00114 * 1 2 3 25 25 H 1.08996 * 109.46950 * 59.99838 * 1 2 3 26 26 H 1.00901 * 110.99869 * 321.04843 * 4 2 1 27 27 H 1.09004 * 109.47031 * 299.99620 * 5 4 2 28 28 H 1.08995 * 109.47111 * 59.99900 * 5 4 2 29 29 H 1.08995 * 109.46615 * 299.99641 * 6 5 4 30 30 H 1.08996 * 109.46939 * 60.00272 * 6 5 4 31 31 H 1.08993 * 109.47740 * 299.99810 * 7 6 5 32 32 H 1.09005 * 109.47573 * 59.99976 * 7 6 5 33 33 H 0.97002 * 120.00555 * 179.97438 * 11 10 8 34 34 H 1.07999 * 128.00556 * 0.02562 * 17 16 2 35 35 H 1.08996 * 109.47620 * 210.30088 * 19 18 17 36 36 H 1.09000 * 109.47594 * 330.30903 * 19 18 17 37 37 H 0.96701 * 114.00104 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0825 0.2226 -2.3469 6 6 2.5951 -0.5332 -3.5745 7 6 2.6599 0.4198 -4.7697 8 6 3.1653 -0.3244 -5.9787 9 1 3.4149 -1.3724 -5.9023 10 6 3.3081 0.3323 -7.1826 11 7 3.0037 1.6084 -7.2758 12 14 3.9340 -0.5904 -8.6815 13 1 4.2026 -2.0043 -8.3156 14 1 2.9092 -0.5434 -9.7552 15 1 5.1871 0.0429 -9.1650 16 6 2.0324 -0.7104 1.2305 17 6 2.2270 -0.1481 2.5130 18 6 2.6814 -1.1834 3.2588 19 6 3.0527 -1.1490 4.7189 20 8 1.9048 -1.4637 5.5097 21 8 2.7416 -2.2431 2.4402 22 7 2.3784 -1.9620 1.3216 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.4495 -1.4979 -1.4101 27 1 1.0871 0.6163 -2.5526 28 1 2.7589 1.0462 -2.1182 29 1 3.5904 -0.9271 -3.3691 30 1 1.9183 -1.3564 -3.8030 31 1 1.6645 0.8136 -4.9749 32 1 3.3364 1.2435 -4.5415 33 1 3.1045 2.0705 -8.1226 34 1 2.0516 0.8705 2.8261 35 1 3.8380 -1.8799 4.9115 36 1 3.4114 -0.1532 4.9793 37 1 2.0704 -1.4598 6.4624 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339979905.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:17:09 Heat of formation + Delta-G solvation = -2.823680 kcal Electronic energy + Delta-G solvation = -17974.825755 eV Core-core repulsion = 14948.111339 eV Total energy + Delta-G solvation = -3026.714416 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.96819 -37.52964 -37.41823 -34.54336 -33.25050 -32.34460 -31.38654 -29.14471 -26.91208 -25.98054 -24.20121 -22.84085 -22.26512 -20.33307 -19.49341 -18.29600 -17.44189 -17.23003 -16.29688 -15.52703 -15.34575 -15.08746 -14.62422 -14.39843 -14.12976 -13.58170 -13.32120 -13.02418 -12.49972 -12.23083 -12.14595 -11.68822 -11.53537 -11.36982 -11.26890 -10.85103 -10.61679 -10.56291 -10.45585 -10.09563 -9.68239 -9.61297 -9.31104 -9.02086 -8.32159 -8.19482 -5.97228 -3.98921 1.27447 2.20013 2.86944 3.33461 3.40653 3.45864 3.90186 4.15473 4.19911 4.48209 4.54820 4.68703 4.83569 4.97421 5.04164 5.11967 5.31865 5.38723 5.40590 5.59786 5.68775 5.82605 5.88658 5.91268 6.08637 6.33148 6.74308 6.77481 7.04175 7.16121 7.30283 7.60745 7.71684 7.86252 8.03476 8.28641 8.47191 9.08508 9.65026 11.14312 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.052087 B = 0.003004 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.435790 B = 9317.848242 C = 9566.678982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.159 3.841 3 H 0.099 0.901 4 N -0.681 5.681 5 C 0.060 3.940 6 C -0.107 4.107 7 C 0.022 3.978 8 C -0.517 4.517 9 H 0.056 0.944 10 C 0.055 3.945 11 N -0.897 5.897 12 Si 0.892 3.108 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.284 1.284 16 C 0.032 3.968 17 C -0.204 4.204 18 C -0.050 4.050 19 C 0.162 3.838 20 O -0.566 6.566 21 O 0.106 5.894 22 N -0.333 5.333 23 H 0.059 0.941 24 H 0.062 0.938 25 H 0.069 0.931 26 H 0.344 0.656 27 H 0.027 0.973 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.045 0.955 31 H 0.014 0.986 32 H 0.016 0.984 33 H 0.259 0.741 34 H 0.170 0.830 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.449 -2.114 26.026 26.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.047 3.953 3 H 0.117 0.883 4 N -0.312 5.312 5 C -0.068 4.068 6 C -0.145 4.145 7 C -0.015 4.015 8 C -0.555 4.555 9 H 0.074 0.926 10 C -0.146 4.146 11 N -0.537 5.537 12 Si 0.720 3.280 13 H -0.197 1.197 14 H -0.211 1.211 15 H -0.210 1.210 16 C -0.128 4.128 17 C -0.226 4.226 18 C -0.114 4.114 19 C 0.083 3.917 20 O -0.373 6.373 21 O 0.036 5.964 22 N -0.034 5.034 23 H 0.078 0.922 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.163 0.837 27 H 0.046 0.954 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.032 0.968 32 H 0.034 0.966 33 H 0.069 0.931 34 H 0.188 0.812 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -2.019 -2.958 24.583 24.843 hybrid contribution -0.427 0.568 -0.206 0.740 sum -2.446 -2.390 24.377 24.616 Atomic orbital electron populations 1.22468 0.95624 1.02710 1.02849 1.19848 0.92683 0.96649 0.86097 0.88335 1.60489 1.57023 1.10046 1.03610 1.22189 0.99249 0.95335 0.90063 1.21620 1.00193 0.98951 0.93725 1.19068 0.97021 0.94315 0.91136 1.21305 1.43276 0.96471 0.94490 0.92607 1.25035 0.95667 0.94897 0.98986 1.69976 1.49113 1.09015 1.25593 0.86538 0.78488 0.80101 0.82910 1.19710 1.21055 1.21014 1.23568 1.01989 0.90594 0.96622 1.22395 1.05879 1.01612 0.92667 1.23947 1.04867 0.87533 0.95030 1.20210 0.87899 1.01283 0.82289 1.86553 1.35132 1.93714 1.21905 1.84876 1.62477 1.34663 1.14409 1.73899 1.14160 1.17244 0.98133 0.92203 0.91863 0.91206 0.83715 0.95433 0.91385 0.92532 0.93586 0.96776 0.96578 0.93116 0.81201 0.91005 0.90042 0.76263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.03 9.14 37.16 0.34 -1.69 16 2 C 0.16 2.11 3.10 -68.86 -0.21 1.89 16 3 H 0.10 1.22 7.80 -51.93 -0.40 0.82 16 4 N -0.68 -10.88 6.10 -107.94 -0.66 -11.53 16 5 C 0.06 1.06 5.48 -3.82 -0.02 1.04 16 6 C -0.11 -2.30 5.41 -26.73 -0.14 -2.45 16 7 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 8 C -0.52 -15.08 9.11 -34.44 -0.31 -15.39 16 9 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 10 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 11 N -0.90 -27.45 13.29 55.43 0.74 -26.72 16 12 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 13 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 15 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 16 C 0.03 0.44 6.28 -82.10 -0.52 -0.08 16 17 C -0.20 -2.21 11.06 -39.38 -0.44 -2.65 16 18 C -0.05 -0.53 7.12 -35.31 -0.25 -0.78 16 19 C 0.16 0.99 7.61 36.00 0.27 1.26 16 20 O -0.57 -3.84 13.64 -35.23 -0.48 -4.32 16 21 O 0.11 1.43 11.20 17.17 0.19 1.62 16 22 N -0.33 -5.12 11.89 33.42 0.40 -4.72 16 23 H 0.06 0.72 8.13 -51.93 -0.42 0.29 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.07 0.80 7.45 -51.93 -0.39 0.41 16 26 H 0.34 5.45 8.47 -39.29 -0.33 5.12 16 27 H 0.03 0.47 7.44 -51.93 -0.39 0.09 16 28 H 0.07 1.21 8.05 -51.93 -0.42 0.79 16 29 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.17 1.34 8.06 -52.49 -0.42 0.91 16 35 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.39 0.48 9.12 45.56 0.42 0.89 16 LS Contribution 319.27 15.07 4.81 4.81 Total: -1.00 -34.61 319.27 -6.40 -41.01 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -4.86 Total: -0.40 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: -1.52 Total: -16.88 kcal Atomic # 7 Polarization: -43.45 SS G_CDS: 0.48 Total: -42.97 kcal Atomic # 8 Polarization: -2.41 SS G_CDS: -0.29 Total: -2.70 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -34.61 -6.40 -41.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339979905.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.186 kcal (2) G-P(sol) polarization free energy of solvation -34.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds