Wall clock time and date at job start Sun Mar 29 2020 23:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 115.54714 * 2 1 4 4 C 1.53076 * 117.49559 * 214.27801 * 2 1 3 5 5 C 1.52997 * 117.50061 * 145.67459 * 2 1 3 6 6 H 1.09001 * 117.50079 * 359.97438 * 5 2 1 7 7 C 1.50700 * 117.49863 * 214.98097 * 5 2 1 8 8 O 1.21281 * 120.00208 * 0.08707 * 7 5 2 9 9 N 1.34780 * 120.00373 * 180.08916 * 7 5 2 10 10 C 1.46490 * 120.00381 * 179.97438 * 9 7 5 11 11 C 1.53004 * 109.47284 * 179.97438 * 10 9 7 12 12 O 1.42900 * 113.27858 * 51.93491 * 11 10 9 13 13 C 1.53495 * 114.20718 * 184.99989 * 11 10 9 14 14 N 1.47066 * 87.98658 * 87.71698 * 13 11 10 15 15 C 1.36937 * 136.06113 * 206.85859 * 14 13 11 16 16 H 1.07995 * 120.00001 * 0.02562 * 15 14 13 17 17 C 1.38817 * 120.00320 * 179.97438 * 15 14 13 18 18 N 1.31620 * 119.99557 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99975 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47363 * 60.00463 * 19 17 15 21 21 H 1.48506 * 109.46719 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47174 * 300.00290 * 19 17 15 23 23 C 1.47067 * 87.88528 * 27.11900 * 14 13 11 24 24 H 1.08993 * 109.47074 * 274.32272 * 1 2 3 25 25 H 1.08995 * 109.47277 * 34.32911 * 1 2 3 26 26 H 1.09003 * 109.46610 * 154.32371 * 1 2 3 27 27 H 1.08997 * 117.51475 * 145.03793 * 4 2 1 28 28 H 1.08998 * 117.49106 * 359.97438 * 4 2 1 29 29 H 0.97000 * 119.99633 * 359.97438 * 9 7 5 30 30 H 1.09008 * 109.47109 * 60.00055 * 10 9 7 31 31 H 1.08999 * 109.47615 * 300.00118 * 10 9 7 32 32 H 0.96695 * 114.00000 * 313.06289 * 12 11 10 33 33 H 1.09005 * 113.46950 * 332.94264 * 13 11 10 34 34 H 1.08998 * 113.47096 * 202.49908 * 13 11 10 35 35 H 0.96999 * 119.99537 * 179.97438 * 18 17 15 36 36 H 1.09007 * 113.46858 * 87.65629 * 23 14 13 37 37 H 1.08993 * 113.47208 * 218.09965 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2368 -1.1220 -0.7648 5 6 2.2365 -1.1208 0.7653 6 1 1.6113 -1.8579 1.2691 7 6 3.5293 -0.7807 1.4610 8 8 3.9710 0.3473 1.4025 9 7 4.1948 -1.7300 2.1483 10 6 5.4518 -1.3996 2.8242 11 6 5.9969 -2.6455 3.5252 12 8 6.0886 -3.7829 2.6649 13 6 7.2527 -2.3932 4.3709 14 7 6.3653 -2.0576 5.4946 15 6 6.4464 -1.2750 6.6154 16 1 7.3490 -0.7189 6.8216 17 6 5.3681 -1.1954 7.4860 18 7 4.2680 -1.8727 7.2344 19 14 5.4786 -0.1273 9.0144 20 1 5.7230 1.2824 8.6166 21 1 4.2044 -0.2144 9.7723 22 1 6.5962 -0.6011 9.8698 23 6 5.3549 -2.9376 4.8885 24 1 -0.3633 0.0775 1.0247 25 1 -0.3633 0.8486 -0.5795 26 1 -0.3633 -0.9262 -0.4453 27 1 3.1720 -0.8769 -1.2681 28 1 1.6114 -1.8599 -1.2672 29 1 3.8414 -2.6321 2.1954 30 1 5.2729 -0.6171 3.5618 31 1 6.1774 -1.0483 2.0906 32 1 5.2959 -3.9391 2.1336 33 1 7.8489 -1.5500 4.0219 34 1 7.8487 -3.2897 4.5412 35 1 3.5146 -1.8174 7.8430 36 1 5.4454 -3.9793 5.1967 37 1 4.3374 -2.5575 4.9795 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484288366.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:07:37 Heat of formation + Delta-G solvation = -3.761016 kcal Electronic energy + Delta-G solvation = -19011.545097 eV Core-core repulsion = 15984.790036 eV Total energy + Delta-G solvation = -3026.755062 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.03558 -38.92086 -36.76211 -35.09384 -33.92425 -32.04602 -29.17787 -28.13874 -26.40516 -24.81493 -23.62874 -22.18261 -20.92992 -20.03978 -18.98977 -17.77910 -16.82552 -16.31648 -15.68157 -15.07526 -14.94820 -14.36976 -14.24019 -13.88017 -13.56285 -13.32209 -13.00872 -12.79918 -12.51830 -12.16876 -12.06734 -11.69116 -11.53319 -11.10163 -11.01713 -10.88700 -10.49915 -10.46957 -10.18617 -10.10938 -9.66129 -9.60022 -9.06119 -8.86350 -8.77651 -6.98256 -5.83314 -3.17054 2.63144 3.24732 3.38499 3.42101 3.43247 3.74447 4.32470 4.57867 4.63699 4.65635 4.72728 5.03993 5.17203 5.17845 5.20176 5.30782 5.49586 5.54821 5.55921 5.61133 5.81778 5.90496 5.93985 6.18929 6.27140 6.42529 6.49629 6.56737 6.64337 7.03312 7.09781 7.42697 7.64370 7.88315 8.01743 8.40849 8.96630 9.63231 10.53419 11.34075 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.021364 B = 0.005478 C = 0.004717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.314617 B = 5109.760995 C = 5934.478896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.123 4.123 3 H 0.117 0.883 4 C -0.150 4.150 5 C -0.189 4.189 6 H 0.124 0.876 7 C 0.543 3.457 8 O -0.542 6.542 9 N -0.720 5.720 10 C 0.129 3.871 11 C 0.050 3.950 12 O -0.551 6.551 13 C 0.138 3.862 14 N -0.602 5.602 15 C -0.220 4.220 16 H 0.084 0.916 17 C -0.005 4.005 18 N -0.919 5.919 19 Si 0.916 3.084 20 H -0.282 1.282 21 H -0.289 1.289 22 H -0.284 1.284 23 C 0.137 3.863 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.098 0.902 28 H 0.103 0.897 29 H 0.396 0.604 30 H 0.094 0.906 31 H 0.067 0.933 32 H 0.362 0.638 33 H 0.049 0.951 34 H 0.047 0.953 35 H 0.255 0.745 36 H 0.034 0.966 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.850 -1.717 -14.771 15.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.142 4.142 3 H 0.135 0.865 4 C -0.188 4.188 5 C -0.210 4.210 6 H 0.142 0.858 7 C 0.329 3.671 8 O -0.419 6.419 9 N -0.371 5.371 10 C 0.005 3.995 11 C 0.008 3.992 12 O -0.355 6.355 13 C 0.011 3.989 14 N -0.329 5.329 15 C -0.347 4.347 16 H 0.102 0.898 17 C -0.202 4.202 18 N -0.566 5.566 19 Si 0.746 3.254 20 H -0.209 1.209 21 H -0.215 1.215 22 H -0.210 1.210 23 C 0.011 3.989 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.116 0.884 28 H 0.121 0.879 29 H 0.230 0.770 30 H 0.112 0.888 31 H 0.085 0.915 32 H 0.209 0.791 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.052 0.948 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.034 -0.785 -14.199 15.085 hybrid contribution -0.637 -0.132 0.865 1.082 sum -5.671 -0.917 -13.334 14.519 Atomic orbital electron populations 1.21400 0.92310 1.02025 1.02327 1.22375 0.95160 0.95165 1.01462 0.86525 1.23102 1.03073 1.01584 0.91005 1.22317 0.97903 1.05306 0.95511 0.85831 1.19574 0.84488 0.84664 0.78373 1.90693 1.68608 1.20928 1.61695 1.45808 1.25026 1.13215 1.53057 1.21523 0.84062 0.97638 0.96256 1.23852 1.01495 0.84537 0.89324 1.86570 1.42265 1.47908 1.58738 1.22334 0.91937 0.98052 0.86558 1.45225 1.12916 1.50369 1.24431 1.18859 0.99887 1.18778 0.97128 0.89803 1.24811 0.96103 1.00158 0.99103 1.69810 1.04261 1.44410 1.38091 0.86144 0.76853 0.80060 0.82388 1.20884 1.21489 1.21035 1.22724 0.96507 0.94027 0.85666 0.91812 0.91791 0.92412 0.88354 0.87887 0.76974 0.88781 0.91484 0.79122 0.93329 0.93527 0.93506 0.94837 0.90702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.04 10.19 37.16 0.38 -0.66 16 2 C -0.12 -1.33 5.92 -90.58 -0.54 -1.86 16 3 H 0.12 1.47 7.67 -51.93 -0.40 1.07 16 4 C -0.15 -1.41 9.88 -26.69 -0.26 -1.67 16 5 C -0.19 -2.18 5.91 -91.77 -0.54 -2.72 16 6 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 7 C 0.54 8.55 7.61 -10.98 -0.08 8.47 16 8 O -0.54 -10.75 16.26 5.56 0.09 -10.66 16 9 N -0.72 -10.75 5.32 -60.29 -0.32 -11.07 16 10 C 0.13 2.33 5.32 -4.05 -0.02 2.31 16 11 C 0.05 0.94 1.73 -90.10 -0.16 0.79 16 12 O -0.55 -8.99 13.55 -35.23 -0.48 -9.47 16 13 C 0.14 2.93 8.11 -8.51 -0.07 2.86 16 14 N -0.60 -15.42 3.57 -184.75 -0.66 -16.08 16 15 C -0.22 -6.15 10.75 -15.06 -0.16 -6.32 16 16 H 0.08 2.25 7.83 -52.49 -0.41 1.84 16 17 C 0.00 -0.14 5.50 -17.43 -0.10 -0.23 16 18 N -0.92 -27.06 11.51 55.49 0.64 -26.42 16 19 Si 0.92 22.17 29.55 -169.99 -5.02 17.15 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 C 0.14 3.18 6.81 -8.51 -0.06 3.12 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.41 7.90 -51.93 -0.41 0.00 16 27 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.10 0.73 8.05 -51.93 -0.42 0.31 16 29 H 0.40 4.73 7.24 -40.82 -0.30 4.43 16 30 H 0.09 2.09 7.94 -51.92 -0.41 1.67 16 31 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.36 4.33 7.50 45.56 0.34 4.67 16 33 H 0.05 0.97 8.12 -51.93 -0.42 0.55 16 34 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 1.89 7.10 -51.93 -0.37 1.52 16 LS Contribution 313.45 15.07 4.72 4.72 Total: -1.00 -33.31 313.45 -7.53 -40.83 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -4.89 Total: 6.92 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: -1.61 Total: 4.08 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: -0.34 Total: -53.57 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -0.39 Total: -20.13 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.31 -7.53 -40.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484288366.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.071 kcal (2) G-P(sol) polarization free energy of solvation -33.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds