Wall clock time and date at job start Sun Mar 29 2020 23:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46508 * 109.47186 * 2 1 4 4 C 1.37095 * 120.00038 * 93.33688 * 3 2 1 5 5 H 1.07995 * 120.00014 * 214.68672 * 4 3 2 6 6 C 1.38948 * 119.99988 * 34.68900 * 4 3 2 7 7 N 1.31420 * 120.00086 * 32.40004 * 6 4 3 8 8 Si 1.86800 * 119.99957 * 212.39623 * 6 4 3 9 9 H 1.48497 * 109.47176 * 180.02562 * 8 6 4 10 10 H 1.48499 * 109.47498 * 300.00306 * 8 6 4 11 11 H 1.48500 * 109.46908 * 60.00063 * 8 6 4 12 12 C 1.34770 * 119.99546 * 273.33813 * 3 2 1 13 13 O 1.21291 * 120.00491 * 354.73686 * 12 3 2 14 14 C 1.50704 * 119.99728 * 174.73971 * 12 3 2 15 15 C 1.54423 * 111.80710 * 77.09204 * 14 12 3 16 16 N 1.50871 * 103.75614 * 99.00944 * 15 14 12 17 17 C 1.48568 * 104.29378 * 39.41563 * 16 15 14 18 18 C 1.54180 * 104.47953 * 319.51143 * 17 16 15 19 19 H 1.09005 * 112.96573 * 262.26392 * 18 17 16 20 20 C 1.54585 * 109.83034 * 136.72037 * 18 17 16 21 21 C 1.54974 * 102.11906 * 226.46063 * 20 18 17 22 22 O 1.43790 * 111.76070 * 315.21300 * 14 12 3 23 23 H 1.08996 * 109.47445 * 305.02525 * 1 2 3 24 24 H 1.09001 * 109.47122 * 65.02341 * 1 2 3 25 25 H 1.08994 * 109.47521 * 185.02584 * 1 2 3 26 26 H 1.08996 * 109.47462 * 239.99823 * 2 1 3 27 27 H 1.09005 * 109.47230 * 119.99617 * 2 1 3 28 28 H 0.96992 * 119.99616 * 5.45974 * 7 6 4 29 29 H 1.08996 * 110.35756 * 217.69254 * 15 14 12 30 30 H 1.09007 * 110.34988 * 339.97542 * 15 14 12 31 31 H 1.00897 * 110.72773 * 158.87385 * 16 15 14 32 32 H 1.09000 * 110.43194 * 200.76356 * 17 16 15 33 33 H 1.08999 * 110.43553 * 78.26393 * 17 16 15 34 34 H 1.09005 * 110.86863 * 108.30671 * 20 18 17 35 35 H 1.08998 * 111.05342 * 344.70383 * 20 18 17 36 36 H 1.09001 * 110.62347 * 278.97844 * 21 20 18 37 37 H 1.09001 * 110.75277 * 156.04303 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3120 2.0045 1.1853 5 1 2.1276 3.0625 1.2992 6 6 2.8469 1.2750 2.2399 7 7 3.6384 0.2541 1.9981 8 14 2.4410 1.7453 4.0016 9 1 3.1319 0.8180 4.9332 10 1 2.8952 3.1353 4.2601 11 1 0.9737 1.6569 4.2120 12 6 2.1788 2.0392 -1.1652 13 8 2.0111 1.4593 -2.2173 14 6 2.5668 3.4954 -1.1610 15 6 4.0684 3.6881 -0.8563 16 7 4.6883 3.8853 -2.2175 17 6 3.7072 4.7278 -2.9488 18 6 2.3327 4.1591 -2.5433 19 1 1.9258 3.4651 -3.2788 20 6 1.3536 5.3173 -2.2441 21 6 0.7102 4.8629 -0.9094 22 8 1.8056 4.2471 -0.2003 23 1 -0.3634 0.5898 0.8415 24 1 -0.3633 0.4339 -0.9316 25 1 -0.3634 -1.0236 0.0900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.9128 0.0581 1.0887 29 1 4.2186 4.5690 -0.2322 30 1 4.4725 2.8021 -0.3665 31 1 5.5792 4.3525 -2.1399 32 1 3.8545 4.6362 -4.0250 33 1 3.7946 5.7693 -2.6392 34 1 0.6015 5.4025 -3.0286 35 1 1.8879 6.2588 -2.1170 36 1 -0.0837 4.1389 -1.0928 37 1 0.3266 5.7190 -0.3544 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001577663210.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:51:31 Heat of formation + Delta-G solvation = -60.202262 kcal Electronic energy + Delta-G solvation = -20765.499923 eV Core-core repulsion = 17736.297386 eV Total energy + Delta-G solvation = -3029.202538 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.33887 -37.78773 -35.60997 -34.97532 -31.84920 -31.65989 -29.96536 -28.28537 -26.99369 -24.44053 -23.14789 -21.95375 -21.50876 -19.93641 -19.00847 -17.72662 -16.38457 -15.72551 -15.66869 -14.79708 -14.43791 -14.20643 -13.83337 -13.60690 -13.59603 -13.12601 -12.68211 -12.39979 -12.24737 -11.81600 -11.55045 -11.35887 -11.13653 -10.99248 -10.85357 -10.77895 -10.60162 -10.38593 -10.21378 -10.17334 -9.92935 -9.51635 -8.87788 -8.31327 -8.22098 -7.69799 -6.57166 -3.89075 3.29335 3.37444 3.56251 3.72939 4.17128 4.25512 4.52463 4.59364 4.83105 4.92703 5.11701 5.25435 5.44831 5.49738 5.58820 5.77209 5.82779 5.93815 6.01189 6.03416 6.06905 6.12740 6.21599 6.27777 6.40447 6.51791 6.60508 6.67183 6.82531 6.86866 7.06281 7.41626 7.54387 7.76592 8.33785 8.47571 9.07379 9.56209 9.88330 10.62469 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.022154 B = 0.009336 C = 0.008684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.578804 B = 2998.533281 C = 3223.700683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.099 3.901 3 N -0.432 5.432 4 C -0.431 4.431 5 H 0.109 0.891 6 C 0.015 3.985 7 N -0.862 5.862 8 Si 1.062 2.938 9 H -0.283 1.283 10 H -0.283 1.283 11 H -0.285 1.285 12 C 0.467 3.533 13 O -0.600 6.600 14 C 0.116 3.884 15 C 0.056 3.944 16 N -0.662 5.662 17 C 0.047 3.953 18 C -0.109 4.109 19 H 0.110 0.890 20 C -0.150 4.150 21 C 0.041 3.959 22 O -0.341 6.341 23 H 0.056 0.944 24 H 0.044 0.956 25 H 0.049 0.951 26 H 0.057 0.943 27 H 0.086 0.914 28 H 0.277 0.723 29 H 0.056 0.944 30 H 0.099 0.901 31 H 0.332 0.668 32 H 0.079 0.921 33 H 0.040 0.960 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.055 0.945 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.572 8.841 -4.065 10.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.025 4.025 3 N -0.150 5.150 4 C -0.557 4.557 5 H 0.126 0.874 6 C -0.194 4.194 7 N -0.494 5.494 8 Si 0.889 3.111 9 H -0.208 1.208 10 H -0.209 1.209 11 H -0.211 1.211 12 C 0.255 3.745 13 O -0.486 6.486 14 C 0.073 3.927 15 C -0.073 4.073 16 N -0.290 5.290 17 C -0.082 4.082 18 C -0.129 4.129 19 H 0.128 0.872 20 C -0.188 4.188 21 C -0.036 4.036 22 O -0.259 6.259 23 H 0.075 0.925 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.104 0.896 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.117 0.883 31 H 0.146 0.854 32 H 0.097 0.903 33 H 0.058 0.942 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.074 0.926 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.547 7.412 -3.033 8.404 hybrid contribution -0.219 1.380 -1.233 1.864 sum -2.766 8.792 -4.266 10.157 Atomic orbital electron populations 1.21985 0.97384 1.00395 1.01392 1.21368 0.93248 0.85574 1.02293 1.43578 1.54553 1.11472 1.05414 1.20719 1.46794 0.97808 0.90428 0.87417 1.26271 0.92647 0.95562 1.04914 1.70737 1.24047 1.30053 1.24607 0.83612 0.76673 0.76176 0.74663 1.20792 1.20921 1.21143 1.20197 0.81717 0.88620 0.84007 1.90505 1.57281 1.69088 1.31739 1.22560 0.92351 0.90430 0.87378 1.23320 0.91837 1.02441 0.89717 1.64432 1.04602 1.46145 1.13858 1.22894 0.91690 0.94274 0.99359 1.23107 0.95307 0.96579 0.97887 0.87173 1.23262 0.98992 0.98162 0.98415 1.23534 0.91133 0.96985 0.91907 1.89044 1.40258 1.65500 1.31132 0.92456 0.93649 0.93202 0.92411 0.89580 0.91219 0.92573 0.88293 0.85371 0.90293 0.94210 0.90541 0.90756 0.92626 0.89361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 10.22 37.15 0.38 -2.83 16 2 C 0.10 2.39 5.37 -4.04 -0.02 2.37 16 3 N -0.43 -11.06 2.34 -114.81 -0.27 -11.33 16 4 C -0.43 -11.17 7.72 -14.93 -0.12 -11.28 16 5 H 0.11 2.83 5.29 -52.49 -0.28 2.55 16 6 C 0.02 0.40 4.62 -17.46 -0.08 0.32 16 7 N -0.86 -23.62 12.26 55.50 0.68 -22.94 16 8 Si 1.06 23.13 30.02 -169.99 -5.10 18.02 16 9 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 10 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 11 H -0.29 -6.03 7.11 56.52 0.40 -5.63 16 12 C 0.47 11.72 6.69 -10.99 -0.07 11.65 16 13 O -0.60 -16.23 15.24 5.55 0.08 -16.14 16 14 C 0.12 2.46 0.62 -89.91 -0.06 2.40 16 15 C 0.06 1.12 6.51 -0.84 -0.01 1.12 16 16 N -0.66 -11.51 7.69 -107.91 -0.83 -12.33 16 17 C 0.05 0.73 7.04 -2.28 -0.02 0.71 16 18 C -0.11 -1.95 3.53 -88.05 -0.31 -2.26 16 19 H 0.11 2.18 6.95 -51.93 -0.36 1.82 16 20 C -0.15 -2.15 6.71 -24.86 -0.17 -2.32 16 21 C 0.04 0.68 7.72 38.20 0.29 0.97 16 22 O -0.34 -7.08 7.87 -35.23 -0.28 -7.35 16 23 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 24 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 25 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.06 1.43 7.46 -51.93 -0.39 1.04 16 27 H 0.09 2.18 5.73 -51.93 -0.30 1.88 16 28 H 0.28 7.85 7.70 -40.82 -0.31 7.53 16 29 H 0.06 1.05 7.99 -51.93 -0.42 0.64 16 30 H 0.10 2.30 7.51 -51.93 -0.39 1.91 16 31 H 0.33 4.74 8.93 -39.29 -0.35 4.39 16 32 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.04 0.53 7.27 -51.93 -0.38 0.15 16 34 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 0.94 7.28 -51.93 -0.38 0.56 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 292.58 15.07 4.41 4.41 Total: -1.00 -30.23 292.58 -6.78 -37.01 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -5.30 Total: 9.82 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -0.17 Total: 0.84 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: -0.42 Total: -46.60 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -0.19 Total: -23.50 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -5.10 Total: 18.02 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.23 -6.78 -37.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577663210.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.196 kcal (2) G-P(sol) polarization free energy of solvation -30.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds