Wall clock time and date at job start Sun Mar 29 2020 23:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46508 * 109.47186 * 2 1 4 4 C 1.37095 * 120.00038 * 93.33688 * 3 2 1 5 5 H 1.07995 * 120.00014 * 214.68672 * 4 3 2 6 6 C 1.38948 * 119.99988 * 34.68900 * 4 3 2 7 7 N 1.31420 * 120.00086 * 32.40004 * 6 4 3 8 8 Si 1.86800 * 119.99957 * 212.39623 * 6 4 3 9 9 H 1.48497 * 109.47176 * 180.02562 * 8 6 4 10 10 H 1.48499 * 109.47498 * 300.00306 * 8 6 4 11 11 H 1.48500 * 109.46908 * 60.00063 * 8 6 4 12 12 C 1.34770 * 119.99546 * 273.33813 * 3 2 1 13 13 O 1.21291 * 120.00491 * 354.73686 * 12 3 2 14 14 C 1.50704 * 119.99728 * 174.73971 * 12 3 2 15 15 C 1.54423 * 111.80710 * 77.09204 * 14 12 3 16 16 N 1.50871 * 103.75614 * 99.00944 * 15 14 12 17 17 C 1.48568 * 104.29378 * 39.41563 * 16 15 14 18 18 C 1.54180 * 104.47953 * 319.51143 * 17 16 15 19 19 H 1.09005 * 112.96573 * 262.26392 * 18 17 16 20 20 C 1.54585 * 109.83034 * 136.72037 * 18 17 16 21 21 C 1.54974 * 102.11906 * 226.46063 * 20 18 17 22 22 O 1.43790 * 111.76070 * 315.21300 * 14 12 3 23 23 H 1.08996 * 109.47445 * 305.02525 * 1 2 3 24 24 H 1.09001 * 109.47122 * 65.02341 * 1 2 3 25 25 H 1.08994 * 109.47521 * 185.02584 * 1 2 3 26 26 H 1.08996 * 109.47462 * 239.99823 * 2 1 3 27 27 H 1.09005 * 109.47230 * 119.99617 * 2 1 3 28 28 H 0.96992 * 119.99616 * 5.45974 * 7 6 4 29 29 H 1.08996 * 110.35756 * 217.69254 * 15 14 12 30 30 H 1.09007 * 110.34988 * 339.97542 * 15 14 12 31 31 H 1.00897 * 110.72773 * 158.87385 * 16 15 14 32 32 H 1.09000 * 110.43194 * 200.76356 * 17 16 15 33 33 H 1.08999 * 110.43553 * 78.26393 * 17 16 15 34 34 H 1.09005 * 110.86863 * 108.30671 * 20 18 17 35 35 H 1.08998 * 111.05342 * 344.70383 * 20 18 17 36 36 H 1.09001 * 110.62347 * 278.97844 * 21 20 18 37 37 H 1.09001 * 110.75277 * 156.04303 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3120 2.0045 1.1853 5 1 2.1276 3.0625 1.2992 6 6 2.8469 1.2750 2.2399 7 7 3.6384 0.2541 1.9981 8 14 2.4410 1.7453 4.0016 9 1 3.1319 0.8180 4.9332 10 1 2.8952 3.1353 4.2601 11 1 0.9737 1.6569 4.2120 12 6 2.1788 2.0392 -1.1652 13 8 2.0111 1.4593 -2.2173 14 6 2.5668 3.4954 -1.1610 15 6 4.0684 3.6881 -0.8563 16 7 4.6883 3.8853 -2.2175 17 6 3.7072 4.7278 -2.9488 18 6 2.3327 4.1591 -2.5433 19 1 1.9258 3.4651 -3.2788 20 6 1.3536 5.3173 -2.2441 21 6 0.7102 4.8629 -0.9094 22 8 1.8056 4.2471 -0.2003 23 1 -0.3634 0.5898 0.8415 24 1 -0.3633 0.4339 -0.9316 25 1 -0.3634 -1.0236 0.0900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.9128 0.0581 1.0887 29 1 4.2186 4.5690 -0.2322 30 1 4.4725 2.8021 -0.3665 31 1 5.5792 4.3525 -2.1399 32 1 3.8545 4.6362 -4.0250 33 1 3.7946 5.7693 -2.6392 34 1 0.6015 5.4025 -3.0286 35 1 1.8879 6.2588 -2.1170 36 1 -0.0837 4.1389 -1.0928 37 1 0.3266 5.7190 -0.3544 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001577663210.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:51:31 Heat of formation + Delta-G solvation = -82.350444 kcal Electronic energy + Delta-G solvation = -20766.460341 eV Core-core repulsion = 17736.297386 eV Total energy + Delta-G solvation = -3030.162955 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.92330 -39.61625 -37.23322 -36.78082 -33.65325 -33.23915 -31.76505 -29.84673 -28.34185 -26.46082 -24.90408 -23.30693 -23.02866 -21.55637 -20.83823 -19.49146 -17.85791 -17.57574 -17.18496 -16.65644 -16.03898 -15.69418 -15.54754 -15.36369 -15.14402 -14.68627 -14.43290 -14.15229 -13.55572 -13.37885 -13.18137 -13.06648 -12.94976 -12.71396 -12.40146 -12.12533 -12.07404 -11.94762 -11.91256 -11.76980 -11.67023 -11.28304 -10.78846 -10.11212 -9.73801 -9.64043 -8.63545 -5.96213 1.51935 1.60277 1.85952 1.88123 2.43271 2.72687 2.78887 3.07332 3.20464 3.48637 3.70356 3.87745 4.03534 4.12338 4.20891 4.30465 4.33567 4.41356 4.47076 4.53667 4.60448 4.77021 4.80619 4.84240 4.87241 4.93191 4.98914 4.99258 5.18526 5.21799 5.44334 5.72211 5.94955 6.25576 6.36278 6.40642 7.07132 7.56573 7.88686 8.53102 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.022154 B = 0.009336 C = 0.008684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.578804 B = 2998.533281 C = 3223.700683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.096 3.904 3 N -0.445 5.445 4 C -0.431 4.431 5 H 0.108 0.892 6 C -0.023 4.023 7 N -0.883 5.883 8 Si 1.111 2.889 9 H -0.287 1.287 10 H -0.266 1.266 11 H -0.272 1.272 12 C 0.452 3.548 13 O -0.629 6.629 14 C 0.111 3.889 15 C 0.064 3.936 16 N -0.676 5.676 17 C 0.053 3.947 18 C -0.113 4.113 19 H 0.083 0.917 20 C -0.133 4.133 21 C 0.031 3.969 22 O -0.362 6.362 23 H 0.054 0.946 24 H 0.038 0.962 25 H 0.081 0.919 26 H 0.041 0.959 27 H 0.073 0.927 28 H 0.258 0.742 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.350 0.650 32 H 0.095 0.905 33 H 0.073 0.927 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.038 0.962 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.306 11.404 -3.943 12.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.028 4.028 3 N -0.162 5.162 4 C -0.558 4.558 5 H 0.125 0.875 6 C -0.227 4.227 7 N -0.517 5.517 8 Si 0.932 3.068 9 H -0.212 1.212 10 H -0.191 1.191 11 H -0.197 1.197 12 C 0.242 3.758 13 O -0.518 6.518 14 C 0.068 3.932 15 C -0.066 4.066 16 N -0.307 5.307 17 C -0.076 4.076 18 C -0.133 4.133 19 H 0.101 0.899 20 C -0.171 4.171 21 C -0.045 4.045 22 O -0.280 6.280 23 H 0.074 0.926 24 H 0.057 0.943 25 H 0.100 0.900 26 H 0.060 0.940 27 H 0.091 0.909 28 H 0.067 0.933 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.167 0.833 32 H 0.114 0.886 33 H 0.091 0.909 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.056 0.944 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.284 9.997 -2.925 10.922 hybrid contribution 0.004 0.547 -1.355 1.461 sum -3.280 10.544 -4.280 11.843 Atomic orbital electron populations 1.21859 0.94646 1.02363 1.00866 1.21385 0.95474 0.85189 1.00737 1.43839 1.54772 1.11848 1.05788 1.20830 1.46460 0.97992 0.90510 0.87507 1.27611 0.91731 0.94989 1.08358 1.70868 1.25982 1.31633 1.23175 0.82977 0.77061 0.76594 0.70134 1.21249 1.19053 1.19739 1.21090 0.80731 0.90660 0.83350 1.90461 1.58360 1.70398 1.32580 1.22501 0.92844 0.88145 0.89720 1.23056 0.91276 1.01022 0.91205 1.64333 1.06015 1.48036 1.12291 1.22985 0.89281 0.95289 1.00015 1.23123 0.97825 0.97276 0.95072 0.89866 1.23241 0.98627 0.97590 0.97620 1.23823 0.89769 0.97412 0.93527 1.88984 1.41368 1.65463 1.32205 0.92649 0.94259 0.90033 0.94048 0.90927 0.93262 0.91149 0.92666 0.83330 0.88629 0.90924 0.88142 0.87904 0.94355 0.86067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.84 10.22 71.98 0.74 -5.10 16 2 C 0.10 4.80 5.37 86.38 0.46 5.26 16 3 N -0.44 -23.46 2.34 -635.54 -1.49 -24.95 16 4 C -0.43 -22.71 7.72 84.04 0.65 -22.06 16 5 H 0.11 5.63 5.29 -2.91 -0.02 5.61 16 6 C -0.02 -1.21 4.62 84.92 0.39 -0.81 16 7 N -0.88 -49.83 12.26 21.66 0.27 -49.56 16 8 Si 1.11 46.20 30.02 68.60 2.06 48.26 16 9 H -0.29 -12.07 7.11 99.48 0.71 -11.37 16 10 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 11 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 12 C 0.45 23.38 6.69 87.66 0.59 23.96 16 13 O -0.63 -35.31 15.24 -3.07 -0.05 -35.36 16 14 C 0.11 4.68 0.62 -10.33 -0.01 4.68 16 15 C 0.06 2.56 6.51 86.00 0.56 3.12 16 16 N -0.68 -22.63 7.69 -495.30 -3.81 -26.44 16 17 C 0.05 1.47 7.04 86.38 0.61 2.08 16 18 C -0.11 -3.85 3.53 -9.13 -0.03 -3.88 16 19 H 0.08 3.27 6.95 -2.38 -0.02 3.26 16 20 C -0.13 -3.33 6.71 31.81 0.21 -3.12 16 21 C 0.03 0.94 7.72 72.66 0.56 1.50 16 22 O -0.36 -14.58 7.87 -148.98 -1.17 -15.75 16 23 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 24 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 26 H 0.04 2.15 7.46 -2.39 -0.02 2.13 16 27 H 0.07 3.81 5.73 -2.38 -0.01 3.80 16 28 H 0.26 15.36 7.70 -92.71 -0.71 14.64 16 29 H 0.07 2.57 7.99 -2.39 -0.02 2.55 16 30 H 0.05 2.67 7.51 -2.38 -0.02 2.65 16 31 H 0.35 9.33 8.93 -89.70 -0.80 8.53 16 32 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.07 1.58 7.27 -2.39 -0.02 1.56 16 34 H 0.10 2.06 8.14 -2.38 -0.02 2.04 16 35 H 0.10 2.04 7.28 -2.39 -0.02 2.02 16 36 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.12 2.87 8.14 -2.39 -0.02 2.85 16 Total: -1.00 -67.92 292.58 0.88 -67.04 By element: Atomic # 1 Polarization: 30.79 SS G_CDS: 0.33 Total: 31.13 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: 4.73 Total: 5.63 kcal Atomic # 7 Polarization: -95.92 SS G_CDS: -5.03 Total: -100.95 kcal Atomic # 8 Polarization: -49.89 SS G_CDS: -1.22 Total: -51.11 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.06 Total: 48.26 kcal Total: -67.92 0.88 -67.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577663210.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.310 kcal (2) G-P(sol) polarization free energy of solvation -67.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds