Wall clock time and date at job start Sun Mar 29 2020 23:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 N 1.46492 * 109.47631 * 174.99916 * 4 2 1 6 6 C 1.36938 * 120.00241 * 180.02562 * 5 4 2 7 7 H 1.07999 * 120.00320 * 0.02562 * 6 5 4 8 8 C 1.38819 * 119.99938 * 180.02562 * 6 5 4 9 9 N 1.31619 * 120.00002 * 180.02562 * 8 6 5 10 10 Si 1.86802 * 119.99885 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.46925 * 90.00103 * 10 8 6 12 12 H 1.48501 * 109.46675 * 209.99959 * 10 8 6 13 13 H 1.48498 * 109.47344 * 329.99965 * 10 8 6 14 14 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 15 15 C 1.34780 * 119.99910 * 85.00011 * 14 2 1 16 16 O 1.21281 * 119.99723 * 0.02562 * 15 14 2 17 17 C 1.50693 * 120.00182 * 180.02562 * 15 14 2 18 18 C 1.53001 * 119.80474 * 250.98079 * 17 15 14 19 19 C 1.52992 * 60.65372 * 247.68600 * 18 17 15 20 20 H 1.09005 * 120.24807 * 112.13867 * 19 18 17 21 21 C 1.54486 * 118.06783 * 269.59155 * 19 18 17 22 22 O 1.44431 * 104.79958 * 86.82789 * 21 19 18 23 23 C 1.43869 * 105.56933 * 319.94312 * 22 21 19 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 27 27 H 1.09001 * 109.47317 * 295.00638 * 4 2 1 28 28 H 1.09006 * 109.47194 * 55.00274 * 4 2 1 29 29 H 0.97006 * 119.99812 * 0.02562 * 5 4 2 30 30 H 0.96999 * 120.00259 * 179.97438 * 9 8 6 31 31 H 0.96994 * 119.99975 * 265.00388 * 14 2 1 32 32 H 1.09000 * 117.43430 * 355.36504 * 18 17 15 33 33 H 1.09005 * 117.42998 * 140.00618 * 18 17 15 34 34 H 1.08996 * 110.37366 * 205.65586 * 21 19 18 35 35 H 1.08999 * 110.37247 * 327.88551 * 21 19 18 36 36 H 1.08996 * 109.55938 * 281.17436 * 23 22 21 37 37 H 1.08999 * 110.91890 * 159.01915 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1907 6 6 4.1837 -1.4387 2.2069 7 1 3.6466 -1.8446 3.0514 8 6 5.5673 -1.5379 2.1515 9 7 6.2244 -2.1270 3.1280 10 14 6.4962 -0.8366 0.6905 11 1 6.8569 0.5774 0.9657 12 1 7.7323 -1.6277 0.4639 13 1 5.6379 -0.9020 -0.5196 14 7 2.0184 -0.6906 -1.1961 15 6 2.1471 -0.0183 -2.3571 16 8 1.8591 1.1586 -2.4115 17 6 2.6490 -0.7288 -3.5877 18 6 4.0458 -0.4176 -4.1290 19 6 2.8175 -0.0118 -4.9459 20 1 2.5734 1.0416 -5.0839 21 6 2.2628 -1.0218 -5.9749 22 8 1.3551 -1.8551 -5.2215 23 6 1.9994 -2.0813 -3.9552 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 1.7516 -0.1583 2.1370 28 1 1.6054 -1.7198 1.2952 29 1 3.9824 -0.4621 0.4320 30 1 7.1911 -2.1966 3.0892 31 1 2.2490 -1.6317 -1.1525 32 1 4.6085 0.3773 -3.6395 33 1 4.6396 -1.2544 -4.4969 34 1 1.7285 -0.4999 -6.7687 35 1 3.0720 -1.6205 -6.3930 36 1 2.7629 -2.8511 -4.0666 37 1 1.2737 -2.3725 -3.1958 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754266855.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:30:02 Heat of formation + Delta-G solvation = -35.034238 kcal Electronic energy + Delta-G solvation = -19340.367778 eV Core-core repulsion = 16312.256608 eV Total energy + Delta-G solvation = -3028.111170 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.98366 -38.96878 -36.39088 -34.77348 -33.78866 -31.60396 -30.47401 -28.88651 -26.03651 -25.64199 -23.81859 -22.15899 -21.38416 -20.60354 -19.72871 -17.95948 -17.32382 -16.33869 -15.84557 -15.62696 -14.99396 -14.80756 -14.45309 -14.27612 -13.99649 -13.43314 -12.96401 -12.84570 -12.71112 -12.44050 -12.35075 -12.05728 -11.90536 -11.47579 -11.15583 -10.93751 -10.92264 -10.57792 -10.45702 -10.19163 -9.95095 -9.66493 -9.59359 -9.00241 -8.89351 -7.31965 -5.83233 -3.19615 2.52636 3.09422 3.30610 3.34014 3.35744 3.40142 3.75404 4.15608 4.27150 4.52990 4.62016 4.75157 4.78906 5.03554 5.08427 5.28035 5.37779 5.41227 5.43404 5.45848 5.48838 5.53125 5.64343 5.78612 5.86570 5.88579 6.00944 6.27105 6.33339 6.43614 6.54218 6.76716 7.66102 7.91907 8.32214 8.35699 9.13821 9.86022 10.05491 11.34913 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.020870 B = 0.006718 C = 0.005647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.297303 B = 4166.638432 C = 4957.439636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.129 3.871 3 H 0.087 0.913 4 C 0.149 3.851 5 N -0.755 5.755 6 C -0.247 4.247 7 H 0.091 0.909 8 C 0.007 3.993 9 N -0.932 5.932 10 Si 0.883 3.117 11 H -0.285 1.285 12 H -0.290 1.290 13 H -0.277 1.277 14 N -0.708 5.708 15 C 0.561 3.439 16 O -0.543 6.543 17 C -0.209 4.209 18 C -0.107 4.107 19 C -0.160 4.160 20 H 0.131 0.869 21 C 0.073 3.927 22 O -0.369 6.369 23 C 0.087 3.913 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.067 0.933 27 H 0.044 0.956 28 H 0.034 0.966 29 H 0.362 0.638 30 H 0.260 0.740 31 H 0.405 0.595 32 H 0.110 0.890 33 H 0.107 0.893 34 H 0.100 0.900 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.516 1.295 -16.494 18.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.025 3.975 3 H 0.105 0.895 4 C 0.021 3.979 5 N -0.401 5.401 6 C -0.377 4.377 7 H 0.109 0.891 8 C -0.189 4.189 9 N -0.579 5.579 10 Si 0.713 3.287 11 H -0.211 1.211 12 H -0.217 1.217 13 H -0.203 1.203 14 N -0.359 5.359 15 C 0.346 3.654 16 O -0.421 6.421 17 C -0.213 4.213 18 C -0.144 4.144 19 C -0.179 4.179 20 H 0.149 0.851 21 C -0.003 4.003 22 O -0.288 6.288 23 C 0.010 3.990 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.086 0.914 27 H 0.061 0.939 28 H 0.051 0.949 29 H 0.195 0.805 30 H 0.070 0.930 31 H 0.240 0.760 32 H 0.129 0.871 33 H 0.125 0.875 34 H 0.118 0.882 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.912 1.927 -16.349 18.719 hybrid contribution 1.159 0.151 -0.703 1.364 sum -7.753 2.078 -17.051 18.846 Atomic orbital electron populations 1.22092 0.95024 1.02152 1.02346 1.21351 0.93896 0.97927 0.84357 0.89494 1.20972 0.85504 0.97675 0.93731 1.42700 1.01306 1.71476 1.24652 1.19051 0.89879 1.29641 0.99111 0.89097 1.24665 0.96167 1.00493 0.97585 1.69696 1.07371 1.48343 1.32536 0.86572 0.79775 0.78990 0.83334 1.21120 1.21662 1.20339 1.45981 1.66272 1.14539 1.09105 1.18989 0.76950 0.86324 0.83113 1.90678 1.50581 1.15799 1.85021 1.23334 1.03419 0.98901 0.95633 1.23167 0.88894 1.03300 0.99054 1.24334 1.02202 1.01226 0.90109 0.85085 1.22979 0.93144 0.90586 0.93622 1.89069 1.43012 1.70062 1.26619 1.22730 0.96968 0.92738 0.86561 0.92327 0.92382 0.91370 0.93861 0.94853 0.80460 0.92991 0.76015 0.87140 0.87505 0.88214 0.91513 0.91070 0.88117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 9.48 37.16 0.35 -1.71 16 2 C 0.13 2.05 2.73 -67.93 -0.19 1.86 16 3 H 0.09 1.54 7.58 -51.93 -0.39 1.15 16 4 C 0.15 2.72 5.82 -4.05 -0.02 2.70 16 5 N -0.76 -17.37 5.24 -59.91 -0.31 -17.68 16 6 C -0.25 -6.83 10.47 -15.06 -0.16 -6.99 16 7 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 8 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 9 N -0.93 -28.86 13.97 55.49 0.78 -28.09 16 10 Si 0.88 21.84 27.74 -169.99 -4.71 17.12 16 11 H -0.28 -7.14 7.11 56.52 0.40 -6.73 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 13 H -0.28 -6.37 6.52 56.52 0.37 -6.00 16 14 N -0.71 -10.81 4.41 -53.81 -0.24 -11.05 16 15 C 0.56 8.96 7.39 -10.99 -0.08 8.88 16 16 O -0.54 -10.32 16.51 5.56 0.09 -10.23 16 17 C -0.21 -2.71 2.84 -154.10 -0.44 -3.14 16 18 C -0.11 -1.21 9.89 -26.73 -0.26 -1.48 16 19 C -0.16 -1.79 6.90 -89.05 -0.61 -2.40 16 20 H 0.13 1.52 8.14 -51.93 -0.42 1.09 16 21 C 0.07 0.70 7.45 37.94 0.28 0.98 16 22 O -0.37 -4.51 11.62 -35.23 -0.41 -4.91 16 23 C 0.09 0.98 7.09 37.93 0.27 1.25 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.36 8.33 5.20 -40.82 -0.21 8.12 16 30 H 0.26 7.67 8.31 -40.82 -0.34 7.34 16 31 H 0.40 5.74 8.41 -40.82 -0.34 5.40 16 32 H 0.11 1.35 8.14 -51.93 -0.42 0.92 16 33 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.10 1.07 7.88 -51.93 -0.41 0.66 16 LS Contribution 310.77 15.07 4.68 4.68 Total: -1.00 -33.16 310.77 -6.68 -39.84 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -5.60 Total: 10.26 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -0.96 Total: 0.05 kcal Atomic # 7 Polarization: -57.04 SS G_CDS: 0.22 Total: -56.82 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -0.32 Total: -15.14 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.71 Total: 17.12 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.16 -6.68 -39.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754266855.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.804 kcal (2) G-P(sol) polarization free energy of solvation -33.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds