Wall clock time and date at job start Sun Mar 29 2020 23:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46915 * 2 1 4 4 C 1.50691 * 109.47141 * 239.99671 * 2 1 3 5 5 H 1.08011 * 119.99994 * 245.64383 * 4 2 1 6 6 C 1.37871 * 120.00306 * 65.64237 * 4 2 1 7 7 N 1.31519 * 120.00387 * 197.14740 * 6 4 2 8 8 Si 1.86804 * 119.99901 * 17.42761 * 6 4 2 9 9 H 1.48495 * 109.47139 * 179.72427 * 8 6 4 10 10 H 1.48499 * 109.46650 * 299.72174 * 8 6 4 11 11 H 1.48501 * 109.46998 * 59.72245 * 8 6 4 12 12 C 1.50701 * 109.46677 * 119.99709 * 2 1 3 13 13 O 1.20823 * 120.00008 * 120.00691 * 12 2 1 14 14 O 1.34232 * 120.00224 * 299.99590 * 12 2 1 15 15 C 1.45193 * 117.00228 * 180.02562 * 14 12 2 16 16 C 1.53001 * 109.47170 * 180.02562 * 15 14 12 17 17 C 1.52998 * 109.47275 * 294.99841 * 16 15 14 18 18 C 1.53001 * 109.47275 * 180.02562 * 17 16 15 19 19 C 1.52997 * 109.46843 * 60.00478 * 18 17 16 20 20 C 1.52994 * 109.47366 * 60.00053 * 19 18 17 21 21 C 1.53001 * 109.47142 * 299.99856 * 19 18 17 22 22 C 1.52992 * 109.47046 * 60.00268 * 21 19 18 23 23 H 1.08998 * 109.46828 * 306.32149 * 1 2 3 24 24 H 1.08992 * 109.46594 * 66.32055 * 1 2 3 25 25 H 1.08996 * 109.46758 * 186.31975 * 1 2 3 26 26 H 0.97004 * 119.99724 * 355.22179 * 7 6 4 27 27 H 1.08997 * 109.47321 * 300.00748 * 15 14 12 28 28 H 1.09002 * 109.46934 * 60.00207 * 15 14 12 29 29 H 1.08994 * 109.47528 * 55.00316 * 16 15 14 30 30 H 1.09003 * 109.47494 * 300.00717 * 17 16 15 31 31 H 1.09007 * 109.46853 * 60.00321 * 17 16 15 32 32 H 1.08995 * 109.46845 * 300.00165 * 18 17 16 33 33 H 1.08996 * 109.46999 * 180.02562 * 18 17 16 34 34 H 1.09007 * 109.46485 * 180.02562 * 19 18 17 35 35 H 1.08999 * 109.47267 * 300.00236 * 20 19 18 36 36 H 1.09001 * 109.46920 * 60.00035 * 20 19 18 37 37 H 1.08998 * 109.46997 * 179.97438 * 20 19 18 38 38 H 1.09007 * 109.47014 * 300.00238 * 21 19 18 39 39 H 1.08998 * 109.46865 * 180.02562 * 21 19 18 40 40 H 1.09001 * 109.47347 * 179.97438 * 22 21 19 41 41 H 1.08994 * 109.47527 * 59.99919 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.5761 -1.6387 -1.1338 6 6 1.7979 -0.1756 -2.4793 7 7 1.9235 -0.9277 -3.5509 8 14 1.3096 1.6194 -2.6500 9 1 1.1231 1.9472 -4.0862 10 1 0.0394 1.8584 -1.9187 11 1 2.3780 2.4793 -2.0806 12 6 2.0323 -0.7104 1.2305 13 8 2.7270 -1.6927 1.1198 14 8 1.7081 -0.2517 2.4497 15 6 2.2276 -0.9855 3.5897 16 6 1.7554 -0.3189 4.8835 17 6 2.3671 1.0795 4.9894 18 6 1.8955 1.7458 6.2834 19 6 2.3383 0.9035 7.4814 20 6 3.8642 0.7933 7.4913 21 6 1.7266 -0.4949 7.3756 22 6 2.1982 -1.1612 6.0816 23 1 -0.3633 0.6087 0.8280 24 1 -0.3632 0.4127 -0.9411 25 1 -0.3633 -1.0214 0.1131 26 1 2.2477 -1.8382 -3.4691 27 1 1.8642 -2.0126 3.5570 28 1 3.3171 -0.9844 3.5567 29 1 0.6684 -0.2403 4.8760 30 1 3.4543 1.0010 4.9968 31 1 2.0521 1.6795 4.1356 32 1 0.8084 1.8244 6.2763 33 1 2.3310 2.7422 6.3586 34 1 2.0018 1.3781 8.4033 35 1 4.2002 0.3186 6.5694 36 1 4.2999 1.7896 7.5668 37 1 4.1796 0.1936 8.3451 38 1 0.6394 -0.4164 7.3685 39 1 2.0417 -1.0948 8.2293 40 1 1.7628 -2.1577 6.0064 41 1 3.2853 -1.2397 6.0886 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327136708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:38:09 Heat of formation + Delta-G solvation = -129.095104 kcal Electronic energy + Delta-G solvation = -19389.715041 eV Core-core repulsion = 16461.065429 eV Total energy + Delta-G solvation = -2928.649612 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.92329 -39.04645 -35.86404 -33.91479 -32.88809 -31.16949 -30.90901 -27.89583 -25.39020 -24.85084 -23.03051 -22.61165 -20.97620 -19.60523 -18.73652 -17.45119 -16.54267 -16.09235 -15.72121 -15.51635 -14.77421 -14.12910 -14.04394 -13.73263 -13.36011 -13.02738 -12.78559 -12.53098 -12.42816 -12.21553 -11.89911 -11.77049 -11.54184 -11.35165 -11.18971 -11.12239 -11.02965 -10.52681 -10.33806 -10.26993 -10.17563 -10.14527 -9.93162 -9.80841 -9.22245 -8.92562 -8.25393 -6.52608 -4.11678 3.20652 3.34888 3.40038 3.41321 3.58618 4.44669 4.48645 4.55505 4.59877 4.94652 5.05473 5.11492 5.20606 5.22190 5.29827 5.39677 5.42726 5.49121 5.58630 5.65704 5.71024 5.78452 5.82709 5.88003 5.96557 6.01881 6.02886 6.13517 6.21624 6.22801 6.34857 6.41810 6.45989 6.54571 6.87312 7.13541 7.25483 7.82252 8.40729 8.78704 8.94751 9.57632 10.90158 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.039008 B = 0.004406 C = 0.004209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.627288 B = 6353.401099 C = 6650.387424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.031 3.969 3 H 0.055 0.945 4 C -0.600 4.600 5 H 0.075 0.925 6 C 0.034 3.966 7 N -0.900 5.900 8 Si 1.042 2.958 9 H -0.282 1.282 10 H -0.271 1.271 11 H -0.281 1.281 12 C 0.470 3.530 13 O -0.510 6.510 14 O -0.366 6.366 15 C 0.067 3.933 16 C -0.083 4.083 17 C -0.116 4.116 18 C -0.114 4.114 19 C -0.093 4.093 20 C -0.152 4.152 21 C -0.111 4.111 22 C -0.115 4.115 23 H 0.037 0.963 24 H 0.067 0.933 25 H 0.046 0.954 26 H 0.270 0.730 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.052 0.948 37 H 0.050 0.950 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.137 5.097 21.848 22.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.011 3.989 3 H 0.072 0.928 4 C -0.637 4.637 5 H 0.093 0.907 6 C -0.172 4.172 7 N -0.533 5.533 8 Si 0.869 3.131 9 H -0.208 1.208 10 H -0.197 1.197 11 H -0.207 1.207 12 C 0.314 3.686 13 O -0.396 6.396 14 O -0.284 6.284 15 C -0.007 4.007 16 C -0.102 4.102 17 C -0.154 4.154 18 C -0.151 4.151 19 C -0.111 4.111 20 C -0.209 4.209 21 C -0.149 4.149 22 C -0.153 4.153 23 H 0.056 0.944 24 H 0.085 0.915 25 H 0.065 0.935 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.360 5.916 20.717 21.587 hybrid contribution 0.650 -1.433 1.173 1.963 sum -0.710 4.482 21.889 22.355 Atomic orbital electron populations 1.22143 0.96131 1.00820 1.01071 1.19042 0.94350 0.97003 0.88457 0.92758 1.21972 1.41190 1.10999 0.89584 0.90682 1.25764 0.94591 1.05074 0.91756 1.70846 1.41207 1.10119 1.31166 0.84097 0.77248 0.75222 0.76483 1.20799 1.19748 1.20744 1.24719 0.76834 0.83255 0.83787 1.90518 1.35830 1.26452 1.86791 1.86571 1.70465 1.55998 1.15404 1.22917 0.98661 0.95225 0.83910 1.21161 1.01434 0.95540 0.92058 1.21609 1.00520 0.95489 0.97752 1.21565 1.00868 0.98374 0.94316 1.21113 0.95842 0.95904 0.98290 1.21952 0.95426 1.01545 1.02006 1.21525 1.00406 0.95781 0.97152 1.21549 1.01557 0.98472 0.93698 0.94397 0.91466 0.93453 0.91971 0.92002 0.91989 0.90204 0.91801 0.90911 0.91968 0.92053 0.91559 0.91846 0.92916 0.93045 0.91905 0.92004 0.91811 0.91394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.80 37.16 0.33 -2.80 16 2 C 0.03 0.76 2.32 -92.92 -0.22 0.55 16 3 H 0.05 1.27 6.80 -51.93 -0.35 0.92 16 4 C -0.60 -17.41 8.63 -34.45 -0.30 -17.71 16 5 H 0.08 2.44 7.02 -52.48 -0.37 2.08 16 6 C 0.03 0.97 5.29 -17.82 -0.09 0.88 16 7 N -0.90 -27.74 13.70 55.43 0.76 -26.98 16 8 Si 1.04 24.42 26.29 -169.99 -4.47 19.95 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.27 -5.73 5.76 56.52 0.33 -5.40 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 C 0.47 11.04 7.25 36.01 0.26 11.30 16 13 O -0.51 -13.42 15.22 -18.75 -0.29 -13.70 16 14 O -0.37 -7.07 9.69 -39.26 -0.38 -7.45 16 15 C 0.07 1.06 4.84 37.16 0.18 1.24 16 16 C -0.08 -1.00 2.44 -90.62 -0.22 -1.22 16 17 C -0.12 -1.32 4.83 -26.73 -0.13 -1.45 16 18 C -0.11 -1.06 5.45 -26.73 -0.15 -1.20 16 19 C -0.09 -0.77 3.19 -90.62 -0.29 -1.06 16 20 C -0.15 -1.25 8.50 37.15 0.32 -0.93 16 21 C -0.11 -0.93 5.45 -26.73 -0.15 -1.08 16 22 C -0.12 -1.13 4.93 -26.73 -0.13 -1.26 16 23 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.07 1.48 4.88 -51.93 -0.25 1.23 16 25 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 26 H 0.27 8.39 8.73 -40.82 -0.36 8.03 16 27 H 0.06 0.98 8.13 -51.93 -0.42 0.56 16 28 H 0.06 0.98 8.13 -51.93 -0.42 0.56 16 29 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.06 0.72 6.43 -51.93 -0.33 0.39 16 31 H 0.07 0.93 7.82 -51.93 -0.41 0.53 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.57 4.81 -51.93 -0.25 0.32 16 36 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.66 6.43 -51.93 -0.33 0.33 16 LS Contribution 315.51 15.07 4.75 4.75 Total: -1.00 -31.51 315.51 -7.23 -38.74 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -7.02 Total: -0.55 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: -0.59 Total: -14.75 kcal Atomic # 7 Polarization: -27.74 SS G_CDS: 0.76 Total: -26.98 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.67 Total: -21.15 kcal Atomic # 14 Polarization: 24.42 SS G_CDS: -4.47 Total: 19.95 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.51 -7.23 -38.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327136708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.357 kcal (2) G-P(sol) polarization free energy of solvation -31.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds