Wall clock time and date at job start Mon Mar 30 2020 00:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47339 * 2 1 4 4 H 1.08998 * 109.46756 * 305.00220 * 3 2 1 5 5 C 1.53001 * 109.47199 * 65.00096 * 3 2 1 6 6 C 1.50697 * 109.47258 * 185.00214 * 3 2 1 7 7 O 1.21277 * 120.00025 * 0.02562 * 6 3 2 8 8 N 1.34773 * 119.99950 * 180.02562 * 6 3 2 9 9 C 1.46505 * 120.00223 * 180.02562 * 8 6 3 10 10 C 1.52994 * 109.47488 * 179.97438 * 9 8 6 11 11 N 1.46496 * 109.47666 * 180.02562 * 10 9 8 12 12 C 1.36941 * 120.00071 * 270.00515 * 11 10 9 13 13 H 1.07996 * 120.00437 * 141.41793 * 12 11 10 14 14 C 1.38814 * 119.99365 * 321.41643 * 12 11 10 15 15 N 1.31620 * 119.99395 * 157.76827 * 14 12 11 16 16 Si 1.86793 * 120.00465 * 337.76730 * 14 12 11 17 17 H 1.48494 * 109.47184 * 95.67852 * 16 14 12 18 18 H 1.48499 * 109.47205 * 215.68409 * 16 14 12 19 19 H 1.48501 * 109.47095 * 335.68112 * 16 14 12 20 20 C 1.46498 * 120.00138 * 89.99591 * 11 10 9 21 21 C 1.53002 * 117.50081 * 183.19672 * 20 11 10 22 22 C 1.52995 * 117.49786 * 114.53530 * 20 11 10 23 23 H 1.09005 * 109.46576 * 300.00204 * 1 2 3 24 24 H 1.08998 * 109.47238 * 59.99585 * 1 2 3 25 25 H 1.09000 * 109.47186 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46906 * 240.00158 * 2 1 3 27 27 H 1.08997 * 109.47505 * 119.99937 * 2 1 3 28 28 H 1.09006 * 109.47001 * 300.00338 * 5 3 2 29 29 H 1.08998 * 109.46899 * 59.99896 * 5 3 2 30 30 H 1.09000 * 109.47162 * 180.02562 * 5 3 2 31 31 H 0.97005 * 120.00301 * 359.97438 * 8 6 3 32 32 H 1.09001 * 109.47276 * 59.99590 * 9 8 6 33 33 H 1.08998 * 109.46826 * 300.00191 * 9 8 6 34 34 H 1.08998 * 109.47371 * 300.00014 * 10 9 8 35 35 H 1.09001 * 109.47069 * 59.99620 * 10 9 8 36 36 H 0.97005 * 119.99869 * 180.02562 * 15 14 12 37 37 H 1.09000 * 115.54997 * 328.86336 * 20 11 10 38 38 H 1.09007 * 117.49730 * 0.02562 * 21 20 11 39 39 H 1.09002 * 117.50011 * 145.02137 * 21 20 11 40 40 H 1.09000 * 117.50243 * 214.97689 * 22 20 11 41 41 H 1.09003 * 117.50172 * 359.97438 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1266 1.3074 6 6 3.5419 1.4443 -0.1239 7 8 4.1449 0.3952 -0.2047 8 7 4.2149 2.6118 -0.1448 9 6 5.6750 2.6136 -0.2658 10 6 6.1850 4.0560 -0.2657 11 7 7.6449 4.0579 -0.3873 12 6 8.4257 4.0237 0.7372 13 1 9.3336 3.4389 0.7467 14 6 8.0502 4.7410 1.8648 15 7 8.5103 4.3946 3.0483 16 14 6.8921 6.1976 1.7025 17 1 5.5003 5.7558 1.9724 18 1 7.2768 7.2471 2.6801 19 1 6.9786 6.7478 0.3259 20 6 8.2696 4.0961 -1.7119 21 6 9.7964 4.0205 -1.7754 22 6 9.0820 5.3409 -2.0741 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 0.5489 2.1253 1.3970 29 1 2.0699 1.5875 2.1491 30 1 1.9983 3.1544 1.3072 31 1 3.7326 3.4509 -0.0805 32 1 5.9630 2.1268 -1.1976 33 1 6.1099 2.0739 0.5754 34 1 5.7501 4.5953 -1.1072 35 1 5.8970 4.5431 0.6659 36 1 8.2476 4.8955 3.8364 37 1 7.7081 3.6115 -2.5106 38 1 10.3361 3.9419 -0.8316 39 1 10.2394 3.4865 -2.6161 40 1 9.0553 5.6751 -3.1113 41 1 9.1513 6.1317 -1.3271 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663705546.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:02 Heat of formation + Delta-G solvation = -3.729717 kcal Electronic energy + Delta-G solvation = -19272.168038 eV Core-core repulsion = 16381.247428 eV Total energy + Delta-G solvation = -2890.920610 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.67272 -37.40115 -35.53380 -34.82737 -33.22648 -31.43353 -29.93067 -27.69378 -25.33357 -24.25608 -22.63814 -21.54474 -21.24105 -19.81690 -19.50033 -17.14701 -16.21073 -15.91511 -15.70500 -15.33234 -15.13468 -14.37671 -14.01219 -13.75116 -13.56438 -13.17213 -12.71263 -12.47779 -12.32568 -12.21854 -11.86160 -11.83856 -11.62461 -11.55763 -10.92106 -10.87235 -10.76595 -10.74129 -10.45926 -10.07082 -9.93880 -9.57187 -9.51170 -9.38657 -8.68229 -8.54832 -6.83485 -6.09294 -3.53469 2.92488 3.18426 3.38039 3.43625 3.47035 4.41417 4.65927 4.69659 4.80040 4.86582 4.93675 5.19904 5.23343 5.29814 5.38138 5.47879 5.69491 5.72777 5.75640 5.77214 5.81234 5.89401 5.95502 5.97968 6.04719 6.15481 6.18376 6.28296 6.39979 6.43470 6.58495 6.71617 6.84191 6.92298 7.08561 7.81692 7.95709 8.32465 8.53159 8.88101 9.59693 9.98477 11.05238 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.023085 B = 0.005473 C = 0.004883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.606136 B = 5114.839332 C = 5732.857907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.105 4.105 3 C -0.112 4.112 4 H 0.093 0.907 5 C -0.146 4.146 6 C 0.511 3.489 7 O -0.544 6.544 8 N -0.726 5.726 9 C 0.100 3.900 10 C 0.132 3.868 11 N -0.568 5.568 12 C -0.274 4.274 13 H 0.085 0.915 14 C 0.041 3.959 15 N -0.892 5.892 16 Si 0.874 3.126 17 H -0.286 1.286 18 H -0.299 1.299 19 H -0.266 1.266 20 C 0.118 3.882 21 C -0.186 4.186 22 C -0.222 4.222 23 H 0.056 0.944 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.395 0.605 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.046 0.954 35 H 0.060 0.940 36 H 0.265 0.735 37 H 0.092 0.908 38 H 0.104 0.896 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.880 -1.805 -7.304 15.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.143 4.143 3 C -0.133 4.133 4 H 0.112 0.888 5 C -0.204 4.204 6 C 0.297 3.703 7 O -0.421 6.421 8 N -0.377 5.377 9 C -0.025 4.025 10 C 0.005 3.995 11 N -0.287 5.287 12 C -0.402 4.402 13 H 0.102 0.898 14 C -0.161 4.161 15 N -0.532 5.532 16 Si 0.704 3.296 17 H -0.214 1.214 18 H -0.227 1.227 19 H -0.190 1.190 20 C 0.010 3.990 21 C -0.225 4.225 22 C -0.263 4.263 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.228 0.772 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.110 0.890 38 H 0.122 0.878 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.389 -2.533 -7.144 15.386 hybrid contribution -0.724 1.393 0.128 1.575 sum -14.113 -1.140 -7.016 15.802 Atomic orbital electron populations 1.21844 0.95727 1.01697 1.01738 1.21328 0.95029 0.94429 1.03526 1.21357 0.92454 0.99182 1.00318 0.88840 1.21836 1.01955 1.00465 0.96137 1.20624 0.89702 0.83842 0.76174 1.90685 1.70384 1.31427 1.49606 1.46130 1.08959 1.08246 1.74382 1.22219 0.77283 1.00809 1.02233 1.21313 0.85136 0.93087 0.99936 1.43509 0.99712 1.84232 1.01249 1.18751 1.07935 1.24922 0.88602 0.89781 1.25506 0.97743 0.97458 0.95394 1.69868 1.46169 1.39404 0.97754 0.86967 0.80107 0.84485 0.78041 1.21369 1.22733 1.19027 1.21177 0.90955 0.98484 0.88402 1.23076 0.96288 1.00486 1.02601 1.23380 1.09482 0.93343 1.00076 0.92485 0.92839 0.92615 0.91204 0.91296 0.91399 0.91913 0.92126 0.77187 0.92244 0.90628 0.93523 0.92258 0.92534 0.89013 0.87807 0.90377 0.90760 0.89282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.67 37.16 0.36 -0.92 16 2 C -0.11 -1.18 4.75 -26.73 -0.13 -1.31 16 3 C -0.11 -1.28 2.72 -91.77 -0.25 -1.53 16 4 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 5 C -0.15 -1.48 8.84 37.16 0.33 -1.15 16 6 C 0.51 8.21 7.15 -10.99 -0.08 8.13 16 7 O -0.54 -11.01 15.92 5.56 0.09 -10.92 16 8 N -0.73 -11.51 5.45 -60.30 -0.33 -11.84 16 9 C 0.10 1.93 6.00 -4.04 -0.02 1.91 16 10 C 0.13 2.68 4.66 -4.05 -0.02 2.66 16 11 N -0.57 -13.03 2.39 -165.67 -0.40 -13.42 16 12 C -0.27 -7.38 8.96 -15.06 -0.13 -7.51 16 13 H 0.08 2.47 6.86 -52.49 -0.36 2.11 16 14 C 0.04 1.13 5.30 -17.43 -0.09 1.04 16 15 N -0.89 -26.56 13.97 55.49 0.78 -25.79 16 16 Si 0.87 21.23 25.08 -169.99 -4.26 16.96 16 17 H -0.29 -6.59 6.69 56.52 0.38 -6.21 16 18 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 19 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 20 C 0.12 2.35 6.56 -67.93 -0.45 1.90 16 21 C -0.19 -3.53 9.80 -26.69 -0.26 -3.80 16 22 C -0.22 -4.16 10.36 -26.70 -0.28 -4.44 16 23 H 0.06 0.43 6.56 -51.93 -0.34 0.09 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.86 7.95 -51.93 -0.41 0.44 16 27 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.07 0.54 6.57 -51.93 -0.34 0.20 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.59 7.56 -51.93 -0.39 0.20 16 31 H 0.39 5.15 7.89 -40.82 -0.32 4.82 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 34 H 0.05 0.83 8.07 -51.93 -0.42 0.41 16 35 H 0.06 1.31 3.40 -51.93 -0.18 1.13 16 36 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 37 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 38 H 0.10 2.22 6.45 -51.93 -0.33 1.89 16 39 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 40 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 LS Contribution 327.67 15.07 4.94 4.94 Total: -1.00 -31.30 327.67 -7.12 -38.41 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -6.91 Total: 6.67 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: -1.02 Total: -5.02 kcal Atomic # 7 Polarization: -51.10 SS G_CDS: 0.05 Total: -51.05 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.09 Total: -10.92 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.26 Total: 16.96 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.30 -7.12 -38.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663705546.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.685 kcal (2) G-P(sol) polarization free energy of solvation -31.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds