Wall clock time and date at job start Sun Mar 29 2020 23:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.46942 * 2 1 4 4 C 1.50696 * 109.47099 * 119.99813 * 2 1 3 5 5 H 1.08003 * 120.00141 * 119.99958 * 4 2 1 6 6 C 1.37878 * 120.00438 * 300.00092 * 4 2 1 7 7 N 1.31521 * 119.99608 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00430 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46952 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47184 * 119.99736 * 8 6 4 11 11 H 1.48502 * 109.46987 * 240.00161 * 8 6 4 12 12 N 1.46895 * 109.46774 * 240.00054 * 2 1 3 13 13 C 1.46900 * 111.00380 * 84.99961 * 12 2 1 14 14 H 1.08998 * 109.46610 * 324.99705 * 13 12 2 15 15 C 1.52998 * 109.46936 * 84.99665 * 13 12 2 16 16 C 1.50698 * 109.47103 * 204.99636 * 13 12 2 17 17 O 1.21284 * 120.00109 * 359.97438 * 16 13 12 18 18 N 1.34774 * 119.99704 * 179.97438 * 16 13 12 19 19 C 1.46504 * 120.00191 * 179.97438 * 18 16 13 20 20 C 1.55238 * 110.58101 * 269.87786 * 19 18 16 21 21 C 1.54894 * 102.58338 * 203.33396 * 20 19 18 22 22 C 1.54266 * 104.31305 * 37.93170 * 21 20 19 23 23 C 1.53869 * 106.60031 * 336.32486 * 22 21 20 24 24 H 1.09002 * 109.46933 * 299.99755 * 1 2 3 25 25 H 1.08994 * 109.47565 * 60.00108 * 1 2 3 26 26 H 1.09004 * 109.47106 * 180.02562 * 1 2 3 27 27 H 0.96998 * 119.99985 * 180.02562 * 7 6 4 28 28 H 1.00902 * 110.99773 * 208.95256 * 12 2 1 29 29 H 1.08998 * 109.47437 * 60.00547 * 15 13 12 30 30 H 1.09002 * 109.46957 * 180.02562 * 15 13 12 31 31 H 1.09000 * 109.47138 * 300.00148 * 15 13 12 32 32 H 0.97000 * 120.00101 * 0.02562 * 18 16 13 33 33 H 1.09006 * 110.43286 * 32.46094 * 19 18 16 34 34 H 1.08996 * 110.89448 * 85.04960 * 20 19 18 35 35 H 1.08993 * 110.76342 * 321.56626 * 20 19 18 36 36 H 1.09002 * 110.48891 * 279.18596 * 21 20 19 37 37 H 1.08998 * 110.48494 * 156.67683 * 21 20 19 38 38 H 1.09001 * 110.03084 * 95.60669 * 22 21 20 39 39 H 1.08996 * 110.03108 * 216.98559 * 22 21 20 40 40 H 1.08999 * 110.04012 * 119.28327 * 23 22 21 41 41 H 1.09006 * 110.02998 * 240.67078 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9427 0.8297 2.6034 8 14 2.3225 -1.1195 4.0080 9 1 3.1475 -2.2863 3.6038 10 1 3.1473 -0.1857 4.8160 11 1 1.1678 -1.5865 4.8165 12 7 2.0196 -0.6925 -1.1994 13 6 2.0824 0.2225 -2.3469 14 1 1.2575 0.9328 -2.2907 15 6 3.4110 0.9808 -2.3224 16 6 1.9785 -0.5677 -3.6259 17 8 1.8640 -1.7745 -3.5854 18 7 2.0129 0.0665 -4.8145 19 6 1.9125 -0.7018 -6.0579 20 6 3.3218 -1.1231 -6.5544 21 6 3.0934 -1.3439 -8.0704 22 6 2.1089 -0.2271 -8.4745 23 6 1.3581 0.1813 -7.1949 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 0.7087 1.1613 3.4844 28 1 2.9172 -1.1205 -1.0287 29 1 4.2359 0.2705 -2.3787 30 1 3.4574 1.6601 -3.1736 31 1 3.4861 1.5524 -1.3973 32 1 2.1049 1.0316 -4.8468 33 1 1.2813 -1.5786 -5.9136 34 1 3.6431 -2.0469 -6.0736 35 1 4.0455 -0.3259 -6.3848 36 1 2.6529 -2.3245 -8.2510 37 1 4.0313 -1.2416 -8.6163 38 1 2.6563 0.6264 -8.8746 39 1 1.4051 -0.6008 -9.2181 40 1 1.5411 1.2328 -6.9740 41 1 0.2892 0.0061 -7.3173 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390236330.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:17:48 Heat of formation + Delta-G solvation = -54.497104 kcal Electronic energy + Delta-G solvation = -19218.631787 eV Core-core repulsion = 16325.509738 eV Total energy + Delta-G solvation = -2893.122049 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.72874 -37.79341 -35.89097 -33.57028 -32.89086 -30.33711 -28.89338 -27.68171 -26.79908 -25.20336 -23.55630 -20.84443 -20.52624 -20.11459 -19.41848 -17.19790 -16.46218 -15.98066 -15.45167 -14.98532 -14.52783 -14.41916 -13.83100 -13.57349 -13.38248 -13.15565 -12.52313 -12.34920 -12.23362 -11.95485 -11.57924 -11.45444 -11.40344 -11.26052 -10.99249 -10.85754 -10.81397 -10.70059 -10.67274 -10.38113 -10.11058 -10.00015 -9.19460 -8.81588 -8.80184 -8.46554 -7.21963 -6.02242 -4.07759 3.12898 3.30253 3.37583 3.38961 3.44227 4.38890 4.42373 4.49777 4.68856 5.13017 5.22910 5.24568 5.31117 5.31759 5.33425 5.41736 5.47573 5.52311 5.62399 5.65137 5.71569 5.85246 5.99657 6.04843 6.10056 6.14741 6.19184 6.43004 6.73619 6.87056 7.15039 7.22367 7.47769 7.75594 7.82646 7.91067 8.27827 8.40254 8.64194 8.72979 9.03067 9.58124 11.04308 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.050534 B = 0.003924 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.954274 B = 7133.753937 C = 7269.872726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.213 3.787 3 H 0.004 0.996 4 C -0.515 4.515 5 H 0.061 0.939 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.284 1.284 12 N -0.665 5.665 13 C 0.069 3.931 14 H 0.096 0.904 15 C -0.174 4.174 16 C 0.518 3.482 17 O -0.519 6.519 18 N -0.735 5.735 19 C 0.141 3.859 20 C -0.135 4.135 21 C -0.124 4.124 22 C -0.121 4.121 23 C -0.131 4.131 24 H 0.081 0.919 25 H 0.002 0.998 26 H 0.033 0.967 27 H 0.260 0.740 28 H 0.338 0.662 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.395 0.605 33 H 0.092 0.908 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.495 2.479 -19.304 19.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.106 3.894 3 H 0.021 0.979 4 C -0.554 4.554 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.210 1.210 12 N -0.296 5.296 13 C -0.046 4.046 14 H 0.114 0.886 15 C -0.233 4.233 16 C 0.304 3.696 17 O -0.392 6.392 18 N -0.389 5.389 19 C 0.035 3.965 20 C -0.174 4.174 21 C -0.162 4.162 22 C -0.159 4.159 23 C -0.169 4.169 24 H 0.100 0.900 25 H 0.021 0.979 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.156 0.844 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.229 0.771 33 H 0.110 0.890 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.684 1.431 -19.250 19.489 hybrid contribution 1.048 0.679 1.042 1.627 sum 3.732 2.110 -18.208 18.706 Atomic orbital electron populations 1.21747 0.97899 0.99574 0.99172 1.19154 0.92573 0.92380 0.85332 0.97863 1.21290 1.31298 1.12490 0.90314 0.92058 1.24910 0.95051 0.95016 0.99036 1.69907 1.36753 1.22995 1.23343 0.86455 0.78621 0.79639 0.82794 1.19700 1.21136 1.20982 1.60423 1.32952 1.31464 1.04741 1.21437 0.98095 0.94001 0.91023 0.88623 1.22444 0.97665 1.00608 1.02584 1.21097 0.74983 0.88741 0.84748 1.90652 1.46922 1.14522 1.87089 1.46173 1.76913 1.10404 1.05416 1.21819 0.96461 0.95108 0.83086 1.22953 0.97359 1.01945 0.95150 1.22312 0.99160 0.98834 0.95925 1.22077 0.98124 0.98663 0.97076 1.22400 1.00318 0.99779 0.94430 0.90005 0.97916 0.94804 0.93012 0.84383 0.92412 0.92892 0.90986 0.77056 0.88968 0.91067 0.91298 0.91460 0.91631 0.91754 0.91715 0.91286 0.91175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 9.17 37.16 0.34 -2.85 16 2 C 0.21 5.40 2.41 -68.87 -0.17 5.23 16 3 H 0.00 0.10 7.11 -51.93 -0.37 -0.27 16 4 C -0.52 -14.28 8.59 -34.44 -0.30 -14.58 16 5 H 0.06 1.70 7.62 -52.48 -0.40 1.30 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.37 11.32 55.43 0.63 -24.75 16 8 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 9 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 N -0.66 -14.86 5.54 -102.18 -0.57 -15.43 16 13 C 0.07 1.24 2.81 -68.87 -0.19 1.04 16 14 H 0.10 1.71 7.11 -51.93 -0.37 1.34 16 15 C -0.17 -2.59 9.04 37.16 0.34 -2.26 16 16 C 0.52 8.95 7.22 -10.99 -0.08 8.87 16 17 O -0.52 -11.12 16.08 5.55 0.09 -11.03 16 18 N -0.74 -9.30 5.06 -52.01 -0.26 -9.56 16 19 C 0.14 1.62 3.22 -66.08 -0.21 1.40 16 20 C -0.14 -1.42 6.61 -24.55 -0.16 -1.59 16 21 C -0.12 -1.03 6.82 -25.07 -0.17 -1.20 16 22 C -0.12 -0.90 6.80 -25.62 -0.17 -1.08 16 23 C -0.13 -1.12 6.53 -25.62 -0.17 -1.29 16 24 H 0.08 2.23 6.07 -51.93 -0.32 1.91 16 25 H 0.00 0.04 7.43 -51.93 -0.39 -0.34 16 26 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.34 7.58 7.96 -39.29 -0.31 7.27 16 29 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 30 H 0.05 0.61 7.57 -51.93 -0.39 0.22 16 31 H 0.07 1.18 7.43 -51.93 -0.39 0.80 16 32 H 0.40 3.95 7.79 -40.82 -0.32 3.63 16 33 H 0.09 1.28 7.55 -51.93 -0.39 0.88 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.52 7.73 -51.93 -0.40 0.12 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 326.34 15.07 4.92 4.92 Total: -1.00 -31.10 326.34 -8.24 -39.33 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -6.98 Total: 6.76 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: -1.04 Total: -6.68 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: -0.20 Total: -49.74 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.09 Total: -11.03 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.10 -8.24 -39.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390236330.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.165 kcal (2) G-P(sol) polarization free energy of solvation -31.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds