Wall clock time and date at job start Sun Mar 29 2020 23:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.46942 * 2 1 4 4 C 1.50696 * 109.47099 * 119.99813 * 2 1 3 5 5 H 1.08003 * 120.00141 * 119.99958 * 4 2 1 6 6 C 1.37878 * 120.00438 * 300.00092 * 4 2 1 7 7 N 1.31521 * 119.99608 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00430 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46952 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47184 * 119.99736 * 8 6 4 11 11 H 1.48502 * 109.46987 * 240.00161 * 8 6 4 12 12 N 1.46895 * 109.46774 * 240.00054 * 2 1 3 13 13 C 1.46900 * 111.00380 * 84.99961 * 12 2 1 14 14 H 1.08998 * 109.46610 * 324.99705 * 13 12 2 15 15 C 1.52998 * 109.46936 * 84.99665 * 13 12 2 16 16 C 1.50698 * 109.47103 * 204.99636 * 13 12 2 17 17 O 1.21284 * 120.00109 * 359.97438 * 16 13 12 18 18 N 1.34774 * 119.99704 * 179.97438 * 16 13 12 19 19 C 1.46504 * 120.00191 * 179.97438 * 18 16 13 20 20 C 1.55238 * 110.58101 * 269.87786 * 19 18 16 21 21 C 1.54894 * 102.58338 * 203.33396 * 20 19 18 22 22 C 1.54266 * 104.31305 * 37.93170 * 21 20 19 23 23 C 1.53869 * 106.60031 * 336.32486 * 22 21 20 24 24 H 1.09002 * 109.46933 * 299.99755 * 1 2 3 25 25 H 1.08994 * 109.47565 * 60.00108 * 1 2 3 26 26 H 1.09004 * 109.47106 * 180.02562 * 1 2 3 27 27 H 0.96998 * 119.99985 * 180.02562 * 7 6 4 28 28 H 1.00902 * 110.99773 * 208.95256 * 12 2 1 29 29 H 1.08998 * 109.47437 * 60.00547 * 15 13 12 30 30 H 1.09002 * 109.46957 * 180.02562 * 15 13 12 31 31 H 1.09000 * 109.47138 * 300.00148 * 15 13 12 32 32 H 0.97000 * 120.00101 * 0.02562 * 18 16 13 33 33 H 1.09006 * 110.43286 * 32.46094 * 19 18 16 34 34 H 1.08996 * 110.89448 * 85.04960 * 20 19 18 35 35 H 1.08993 * 110.76342 * 321.56626 * 20 19 18 36 36 H 1.09002 * 110.48891 * 279.18596 * 21 20 19 37 37 H 1.08998 * 110.48494 * 156.67683 * 21 20 19 38 38 H 1.09001 * 110.03084 * 95.60669 * 22 21 20 39 39 H 1.08996 * 110.03108 * 216.98559 * 22 21 20 40 40 H 1.08999 * 110.04012 * 119.28327 * 23 22 21 41 41 H 1.09006 * 110.02998 * 240.67078 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9427 0.8297 2.6034 8 14 2.3225 -1.1195 4.0080 9 1 3.1475 -2.2863 3.6038 10 1 3.1473 -0.1857 4.8160 11 1 1.1678 -1.5865 4.8165 12 7 2.0196 -0.6925 -1.1994 13 6 2.0824 0.2225 -2.3469 14 1 1.2575 0.9328 -2.2907 15 6 3.4110 0.9808 -2.3224 16 6 1.9785 -0.5677 -3.6259 17 8 1.8640 -1.7745 -3.5854 18 7 2.0129 0.0665 -4.8145 19 6 1.9125 -0.7018 -6.0579 20 6 3.3218 -1.1231 -6.5544 21 6 3.0934 -1.3439 -8.0704 22 6 2.1089 -0.2271 -8.4745 23 6 1.3581 0.1813 -7.1949 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 0.7087 1.1613 3.4844 28 1 2.9172 -1.1205 -1.0287 29 1 4.2359 0.2705 -2.3787 30 1 3.4574 1.6601 -3.1736 31 1 3.4861 1.5524 -1.3973 32 1 2.1049 1.0316 -4.8468 33 1 1.2813 -1.5786 -5.9136 34 1 3.6431 -2.0469 -6.0736 35 1 4.0455 -0.3259 -6.3848 36 1 2.6529 -2.3245 -8.2510 37 1 4.0313 -1.2416 -8.6163 38 1 2.6563 0.6264 -8.8746 39 1 1.4051 -0.6008 -9.2181 40 1 1.5411 1.2328 -6.9740 41 1 0.2892 0.0061 -7.3173 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390236330.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:17:47 Heat of formation + Delta-G solvation = -75.863227 kcal Electronic energy + Delta-G solvation = -19219.558292 eV Core-core repulsion = 16325.509738 eV Total energy + Delta-G solvation = -2894.048554 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.99362 -38.83319 -37.58847 -35.03619 -34.51549 -32.10148 -29.61767 -28.97344 -28.18486 -27.29296 -24.95920 -22.08423 -21.47777 -21.39496 -20.85500 -18.89136 -17.76560 -17.38042 -16.85927 -16.25563 -16.08960 -15.75365 -15.39109 -14.88947 -14.49890 -14.27908 -14.21763 -13.83327 -13.42751 -13.30397 -13.14662 -12.85746 -12.60486 -12.47212 -12.45211 -12.27653 -12.19476 -12.07308 -11.98191 -11.93119 -11.71602 -11.29716 -10.93819 -10.65845 -10.53173 -9.94711 -8.99219 -8.13938 -6.26654 1.40653 1.43242 1.54943 1.75542 2.20748 2.43090 3.14888 3.60016 3.66317 3.75696 3.91602 4.02176 4.17505 4.21790 4.51382 4.54313 4.54379 4.63389 4.72950 4.79403 4.79940 4.83576 4.93401 5.05208 5.09036 5.19192 5.19509 5.22195 5.25228 5.29747 5.46152 5.48777 5.66324 5.69188 5.84028 6.21156 6.45287 6.60042 6.81302 6.97477 7.41388 7.43574 8.92012 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.050534 B = 0.003924 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.954274 B = 7133.753937 C = 7269.872726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.220 3.780 3 H -0.012 1.012 4 C -0.538 4.538 5 H 0.053 0.947 6 C 0.017 3.983 7 N -0.915 5.915 8 Si 0.961 3.039 9 H -0.271 1.271 10 H -0.276 1.276 11 H -0.281 1.281 12 N -0.677 5.677 13 C 0.066 3.934 14 H 0.097 0.903 15 C -0.163 4.163 16 C 0.522 3.478 17 O -0.568 6.568 18 N -0.713 5.713 19 C 0.133 3.867 20 C -0.134 4.134 21 C -0.121 4.121 22 C -0.116 4.116 23 C -0.124 4.124 24 H 0.062 0.938 25 H 0.022 0.978 26 H 0.018 0.982 27 H 0.263 0.737 28 H 0.334 0.666 29 H 0.056 0.944 30 H 0.093 0.907 31 H 0.055 0.945 32 H 0.412 0.588 33 H 0.063 0.937 34 H 0.045 0.955 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.186 3.564 -20.865 21.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.112 3.888 3 H 0.005 0.995 4 C -0.576 4.576 5 H 0.071 0.929 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.786 3.214 9 H -0.195 1.195 10 H -0.202 1.202 11 H -0.207 1.207 12 N -0.307 5.307 13 C -0.048 4.048 14 H 0.115 0.885 15 C -0.222 4.222 16 C 0.308 3.692 17 O -0.446 6.446 18 N -0.366 5.366 19 C 0.028 3.972 20 C -0.173 4.173 21 C -0.159 4.159 22 C -0.154 4.154 23 C -0.162 4.162 24 H 0.080 0.920 25 H 0.041 0.959 26 H 0.037 0.963 27 H 0.073 0.927 28 H 0.152 0.848 29 H 0.075 0.925 30 H 0.112 0.888 31 H 0.074 0.926 32 H 0.250 0.750 33 H 0.081 0.919 34 H 0.064 0.936 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.104 0.896 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.381 2.564 -20.862 21.289 hybrid contribution 0.821 0.363 1.452 1.707 sum 4.202 2.927 -19.410 20.075 Atomic orbital electron populations 1.21592 0.98116 0.98480 0.99157 1.18921 0.92308 0.91438 0.86087 0.99454 1.21574 1.31678 1.12599 0.91756 0.92869 1.25663 0.95149 0.95688 1.01783 1.70005 1.37312 1.23922 1.24151 0.85466 0.78114 0.78600 0.79181 1.19548 1.20197 1.20674 1.60283 1.32944 1.32660 1.04863 1.21521 0.99905 0.93586 0.89808 0.88465 1.22317 0.95598 1.00687 1.03556 1.20922 0.74663 0.87950 0.85693 1.90638 1.49637 1.16478 1.87798 1.45968 1.74843 1.11290 1.04546 1.21969 0.97062 0.94894 0.83274 1.22912 0.96648 1.00984 0.96728 1.22306 1.00245 0.99207 0.94131 1.22077 0.98006 0.98794 0.96552 1.22380 1.00424 0.99940 0.93485 0.91961 0.95888 0.96263 0.92749 0.84819 0.92474 0.88782 0.92577 0.75041 0.91855 0.93593 0.90392 0.91852 0.90179 0.90133 0.90725 0.89580 0.91020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.93 9.17 71.98 0.66 -5.27 16 2 C 0.22 11.38 2.41 44.17 0.11 11.49 16 3 H -0.01 -0.65 7.11 -2.39 -0.02 -0.67 16 4 C -0.54 -30.29 8.59 25.60 0.22 -30.07 16 5 H 0.05 3.01 7.62 -2.91 -0.02 2.99 16 6 C 0.02 0.92 5.30 84.65 0.45 1.37 16 7 N -0.91 -52.43 11.32 21.45 0.24 -52.19 16 8 Si 0.96 44.18 29.54 68.60 2.03 46.21 16 9 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 10 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 12 N -0.68 -30.77 5.54 -477.19 -2.64 -33.41 16 13 C 0.07 2.32 2.81 44.17 0.12 2.45 16 14 H 0.10 3.39 7.11 -2.39 -0.02 3.37 16 15 C -0.16 -4.62 9.04 71.98 0.65 -3.97 16 16 C 0.52 17.82 7.22 87.66 0.63 18.45 16 17 O -0.57 -24.90 16.08 -3.04 -0.05 -24.95 16 18 N -0.71 -16.90 5.06 -436.87 -2.21 -19.11 16 19 C 0.13 2.91 3.22 46.19 0.15 3.05 16 20 C -0.13 -2.66 6.61 32.01 0.21 -2.45 16 21 C -0.12 -1.75 6.82 31.67 0.22 -1.53 16 22 C -0.12 -1.35 6.80 31.32 0.21 -1.14 16 23 C -0.12 -1.78 6.53 31.32 0.20 -1.58 16 24 H 0.06 3.45 6.07 -2.39 -0.01 3.43 16 25 H 0.02 1.03 7.43 -2.39 -0.02 1.02 16 26 H 0.02 0.99 8.14 -2.38 -0.02 0.97 16 27 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 28 H 0.33 15.37 7.96 -89.69 -0.71 14.66 16 29 H 0.06 1.64 8.13 -2.39 -0.02 1.62 16 30 H 0.09 1.87 7.57 -2.39 -0.02 1.85 16 31 H 0.06 1.80 7.43 -2.39 -0.02 1.78 16 32 H 0.41 6.98 7.79 -92.71 -0.72 6.26 16 33 H 0.06 1.78 7.55 -2.38 -0.02 1.76 16 34 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.09 0.97 7.73 -2.39 -0.02 0.95 16 41 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 Total: -1.00 -68.27 326.34 0.78 -67.49 By element: Atomic # 1 Polarization: 25.58 SS G_CDS: -0.42 Total: 25.16 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: 3.84 Total: -9.20 kcal Atomic # 7 Polarization: -100.10 SS G_CDS: -4.61 Total: -104.71 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.05 Total: -24.95 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -68.27 0.78 -67.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390236330.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.378 kcal (2) G-P(sol) polarization free energy of solvation -68.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds