Wall clock time and date at job start Mon Mar 30 2020 00:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.47122 * 2 1 4 4 C 1.36934 * 119.99747 * 95.10693 * 3 2 1 5 5 H 1.07997 * 119.99950 * 221.26644 * 4 3 2 6 6 C 1.38814 * 120.00161 * 41.27758 * 4 3 2 7 7 N 1.31619 * 119.99841 * 202.47479 * 6 4 3 8 8 Si 1.86801 * 119.99905 * 22.46831 * 6 4 3 9 9 H 1.48498 * 109.47274 * 264.34967 * 8 6 4 10 10 H 1.48500 * 109.47290 * 24.35303 * 8 6 4 11 11 H 1.48506 * 109.46880 * 144.35009 * 8 6 4 12 12 C 1.46498 * 120.00150 * 275.11012 * 3 2 1 13 13 C 1.53000 * 109.47139 * 270.00231 * 12 3 2 14 14 C 1.52998 * 109.47543 * 179.97438 * 13 12 3 15 15 N 1.46500 * 109.47542 * 179.97438 * 14 13 12 16 16 C 1.34770 * 120.00005 * 179.97438 * 15 14 13 17 17 O 1.21282 * 120.00103 * 0.02562 * 16 15 14 18 18 C 1.50706 * 120.00093 * 180.02562 * 16 15 14 19 19 H 1.08997 * 115.54858 * 34.41694 * 18 16 15 20 20 C 1.52995 * 117.49660 * 248.75018 * 18 16 15 21 21 C 1.52999 * 117.50054 * 180.08897 * 18 16 15 22 22 H 1.08997 * 117.49764 * 359.97438 * 21 18 16 23 23 C 1.52997 * 117.49820 * 214.99853 * 21 18 16 24 24 H 1.09002 * 109.47122 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47250 * 299.99789 * 1 2 3 26 26 H 1.08995 * 109.46970 * 60.00000 * 1 2 3 27 27 H 1.08999 * 109.47176 * 239.99697 * 2 1 3 28 28 H 1.08995 * 109.46970 * 120.00000 * 2 1 3 29 29 H 0.96999 * 119.99609 * 179.97438 * 7 6 4 30 30 H 1.09003 * 109.47223 * 29.99471 * 12 3 2 31 31 H 1.08993 * 109.47310 * 150.00185 * 12 3 2 32 32 H 1.09008 * 109.46850 * 299.99913 * 13 12 3 33 33 H 1.08997 * 109.47473 * 59.99587 * 13 12 3 34 34 H 1.08999 * 109.47043 * 300.00159 * 14 13 12 35 35 H 1.09005 * 109.46754 * 59.99615 * 14 13 12 36 36 H 0.97002 * 119.99835 * 0.02562 * 15 14 13 37 37 H 1.09006 * 117.50251 * 359.97438 * 20 18 16 38 38 H 1.09004 * 117.50116 * 145.01592 * 20 18 16 39 39 H 1.09011 * 109.46794 * 60.00143 * 23 21 18 40 40 H 1.08994 * 109.47236 * 179.97438 * 23 21 18 41 41 H 1.08997 * 109.47489 * 300.00189 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3461 1.9915 1.1812 5 1 2.0695 3.0214 1.3518 6 6 3.0341 1.2864 2.1592 7 7 2.9714 1.6729 3.4159 8 14 4.0485 -0.2109 1.6919 9 1 3.2401 -1.4397 1.8954 10 1 4.4485 -0.1121 0.2652 11 1 5.2636 -0.2710 2.5436 12 6 2.1560 2.1095 -1.2636 13 6 3.5585 1.8841 -1.8321 14 6 3.7021 2.6441 -3.1521 15 7 5.0452 2.4288 -3.6961 16 6 5.4006 3.0050 -4.8614 17 8 4.6088 3.7022 -5.4595 18 6 6.7821 2.7830 -5.4213 19 1 7.2116 1.7984 -5.2364 20 6 7.7371 3.9781 -5.4402 21 6 7.1254 3.4660 -6.7466 22 1 6.3520 4.0756 -7.2138 23 6 8.0455 2.7147 -7.7110 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.4519 1.1800 4.0993 30 1 1.4134 1.7472 -1.9746 31 1 2.0019 3.1741 -1.0881 32 1 4.3012 2.2463 -1.1211 33 1 3.7126 0.8194 -2.0076 34 1 2.9594 2.2815 -3.8628 35 1 3.5478 3.7089 -2.9769 36 1 5.6784 1.8708 -3.2179 37 1 7.3661 4.9251 -5.0480 38 1 8.7950 3.7798 -5.2681 39 1 7.5856 1.7656 -7.9867 40 1 8.2019 3.3160 -8.6065 41 1 9.0039 2.5271 -7.2269 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479850708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:05:30 Heat of formation + Delta-G solvation = -9.225188 kcal Electronic energy + Delta-G solvation = -18681.611944 eV Core-core repulsion = 15790.453032 eV Total energy + Delta-G solvation = -2891.158911 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.98612 -37.22843 -36.52117 -34.89586 -32.04576 -31.41801 -29.29791 -28.70520 -25.91335 -23.91772 -23.03238 -21.79339 -21.03507 -20.31286 -19.56629 -17.39928 -16.74543 -15.94200 -15.54584 -15.13778 -14.77878 -14.55757 -14.03086 -13.74852 -13.44917 -13.18738 -13.02755 -12.95790 -12.39126 -12.26710 -11.86935 -11.76148 -11.66811 -11.32394 -11.23645 -10.98637 -10.75840 -10.57974 -10.39793 -10.30748 -9.99806 -9.82329 -9.75197 -9.56084 -8.95343 -8.53608 -6.79950 -6.03180 -3.47351 2.49023 3.17263 3.28876 3.42428 3.47070 3.63952 4.48866 4.49852 4.54161 4.61659 4.93620 4.99166 5.05650 5.22039 5.37474 5.44750 5.45796 5.48137 5.63218 5.74243 5.77106 5.80414 5.94084 6.04792 6.06533 6.10727 6.26236 6.32525 6.36906 6.51781 6.59246 6.73676 6.81892 6.90713 7.07549 7.57805 8.06008 8.26928 8.39715 8.98431 9.68494 10.12360 11.12437 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.028169 B = 0.004075 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.747695 B = 6869.606226 C = 7277.080260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.132 3.868 3 N -0.605 5.605 4 C -0.269 4.269 5 H 0.076 0.924 6 C 0.039 3.961 7 N -0.899 5.899 8 Si 0.876 3.124 9 H -0.287 1.287 10 H -0.267 1.267 11 H -0.301 1.301 12 C 0.155 3.845 13 C -0.153 4.153 14 C 0.120 3.880 15 N -0.723 5.723 16 C 0.539 3.461 17 O -0.547 6.547 18 C -0.192 4.192 19 H 0.122 0.878 20 C -0.149 4.149 21 C -0.124 4.124 22 H 0.117 0.883 23 C -0.123 4.123 24 H 0.038 0.962 25 H 0.058 0.942 26 H 0.042 0.958 27 H 0.032 0.968 28 H 0.056 0.944 29 H 0.263 0.737 30 H 0.041 0.959 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.401 0.599 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.287 -0.740 -17.256 19.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.007 3.993 3 N -0.327 5.327 4 C -0.398 4.398 5 H 0.094 0.906 6 C -0.162 4.162 7 N -0.539 5.539 8 Si 0.705 3.295 9 H -0.215 1.215 10 H -0.191 1.191 11 H -0.229 1.229 12 C 0.028 3.972 13 C -0.193 4.193 14 C -0.004 4.004 15 N -0.373 5.373 16 C 0.325 3.675 17 O -0.425 6.425 18 C -0.213 4.213 19 H 0.140 0.860 20 C -0.186 4.186 21 C -0.142 4.142 22 H 0.135 0.865 23 C -0.180 4.180 24 H 0.057 0.943 25 H 0.077 0.923 26 H 0.061 0.939 27 H 0.051 0.949 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.235 0.765 37 H 0.118 0.882 38 H 0.122 0.878 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.730 -0.256 -17.472 19.108 hybrid contribution 0.973 -1.306 0.317 1.659 sum 8.703 -1.561 -17.155 19.299 Atomic orbital electron populations 1.22245 0.99052 0.99369 1.01627 1.21110 0.92556 0.86758 0.98922 1.44151 1.74718 1.11339 1.02478 1.18763 1.31374 0.98967 0.90713 0.90623 1.25587 0.97412 0.97946 0.95287 1.69886 1.42741 1.41596 0.99719 0.86909 0.80527 0.83309 0.78721 1.21471 1.19135 1.22940 1.20791 0.91889 0.96930 0.87593 1.22530 1.02961 0.99478 0.94354 1.21482 0.82494 1.00893 0.95488 1.46092 1.16509 1.51589 1.23105 1.19660 0.87923 0.79273 0.80667 1.90679 1.52962 1.39078 1.59781 1.22333 0.95087 0.99642 1.04247 0.86028 1.23112 0.97934 0.96766 1.00836 1.22376 1.01498 1.01559 0.88798 0.86516 1.21400 0.98179 0.99959 0.98504 0.94334 0.92273 0.93851 0.94942 0.92633 0.92717 0.94087 0.92736 0.90951 0.92478 0.91907 0.91558 0.76492 0.88222 0.87824 0.91985 0.91717 0.92369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.07 10.24 37.16 0.38 -2.69 16 2 C 0.13 2.81 5.05 -4.04 -0.02 2.79 16 3 N -0.60 -13.91 2.00 -173.25 -0.35 -14.26 16 4 C -0.27 -7.36 9.87 -15.06 -0.15 -7.50 16 5 H 0.08 2.25 8.06 -52.49 -0.42 1.83 16 6 C 0.04 1.09 5.23 -17.43 -0.09 1.00 16 7 N -0.90 -27.08 13.97 55.49 0.78 -26.30 16 8 Si 0.88 21.58 25.26 -169.99 -4.29 17.29 16 9 H -0.29 -6.97 6.73 56.52 0.38 -6.59 16 10 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 11 H -0.30 -7.58 7.11 56.52 0.40 -7.17 16 12 C 0.15 2.95 5.69 -4.04 -0.02 2.93 16 13 C -0.15 -2.59 5.65 -26.73 -0.15 -2.74 16 14 C 0.12 1.79 5.67 -4.04 -0.02 1.77 16 15 N -0.72 -9.65 5.56 -60.29 -0.33 -9.99 16 16 C 0.54 7.54 7.61 -10.99 -0.08 7.46 16 17 O -0.55 -9.64 16.26 5.56 0.09 -9.55 16 18 C -0.19 -1.98 5.91 -91.77 -0.54 -2.53 16 19 H 0.12 1.02 8.14 -51.93 -0.42 0.59 16 20 C -0.15 -1.34 9.88 -26.70 -0.26 -1.61 16 21 C -0.12 -1.18 5.92 -90.58 -0.54 -1.71 16 22 H 0.12 1.30 7.67 -51.93 -0.40 0.90 16 23 C -0.12 -0.87 10.19 37.16 0.38 -0.49 16 24 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 26 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.03 0.62 8.11 -51.93 -0.42 0.20 16 28 H 0.06 1.30 4.07 -51.93 -0.21 1.09 16 29 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.04 0.70 8.07 -51.93 -0.42 0.28 16 31 H 0.05 1.05 8.04 -51.93 -0.42 0.63 16 32 H 0.07 1.36 8.14 -51.92 -0.42 0.93 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.40 4.55 8.47 -40.82 -0.35 4.21 16 37 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.10 0.72 8.05 -51.93 -0.42 0.31 16 39 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.35 7.90 -51.93 -0.41 -0.06 16 LS Contribution 337.22 15.07 5.08 5.08 Total: -1.00 -31.63 337.22 -7.42 -39.05 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -7.27 Total: 2.01 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: -1.12 Total: -3.33 kcal Atomic # 7 Polarization: -50.65 SS G_CDS: 0.09 Total: -50.55 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.09 Total: -9.55 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.29 Total: 17.29 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.63 -7.42 -39.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479850708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.825 kcal (2) G-P(sol) polarization free energy of solvation -31.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds