Wall clock time and date at job start Mon Mar 30 2020 00:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.47122 * 2 1 4 4 C 1.36934 * 119.99747 * 95.10693 * 3 2 1 5 5 H 1.07997 * 119.99950 * 221.26644 * 4 3 2 6 6 C 1.38814 * 120.00161 * 41.27758 * 4 3 2 7 7 N 1.31619 * 119.99841 * 202.47479 * 6 4 3 8 8 Si 1.86801 * 119.99905 * 22.46831 * 6 4 3 9 9 H 1.48498 * 109.47274 * 264.34967 * 8 6 4 10 10 H 1.48500 * 109.47290 * 24.35303 * 8 6 4 11 11 H 1.48506 * 109.46880 * 144.35009 * 8 6 4 12 12 C 1.46498 * 120.00150 * 275.11012 * 3 2 1 13 13 C 1.53000 * 109.47139 * 270.00231 * 12 3 2 14 14 C 1.52998 * 109.47543 * 179.97438 * 13 12 3 15 15 N 1.46500 * 109.47542 * 179.97438 * 14 13 12 16 16 C 1.34770 * 120.00005 * 179.97438 * 15 14 13 17 17 O 1.21282 * 120.00103 * 0.02562 * 16 15 14 18 18 C 1.50706 * 120.00093 * 180.02562 * 16 15 14 19 19 H 1.08997 * 115.54858 * 34.41694 * 18 16 15 20 20 C 1.52995 * 117.49660 * 248.75018 * 18 16 15 21 21 C 1.52999 * 117.50054 * 180.08897 * 18 16 15 22 22 H 1.08997 * 117.49764 * 359.97438 * 21 18 16 23 23 C 1.52997 * 117.49820 * 214.99853 * 21 18 16 24 24 H 1.09002 * 109.47122 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47250 * 299.99789 * 1 2 3 26 26 H 1.08995 * 109.46970 * 60.00000 * 1 2 3 27 27 H 1.08999 * 109.47176 * 239.99697 * 2 1 3 28 28 H 1.08995 * 109.46970 * 120.00000 * 2 1 3 29 29 H 0.96999 * 119.99609 * 179.97438 * 7 6 4 30 30 H 1.09003 * 109.47223 * 29.99471 * 12 3 2 31 31 H 1.08993 * 109.47310 * 150.00185 * 12 3 2 32 32 H 1.09008 * 109.46850 * 299.99913 * 13 12 3 33 33 H 1.08997 * 109.47473 * 59.99587 * 13 12 3 34 34 H 1.08999 * 109.47043 * 300.00159 * 14 13 12 35 35 H 1.09005 * 109.46754 * 59.99615 * 14 13 12 36 36 H 0.97002 * 119.99835 * 0.02562 * 15 14 13 37 37 H 1.09006 * 117.50251 * 359.97438 * 20 18 16 38 38 H 1.09004 * 117.50116 * 145.01592 * 20 18 16 39 39 H 1.09011 * 109.46794 * 60.00143 * 23 21 18 40 40 H 1.08994 * 109.47236 * 179.97438 * 23 21 18 41 41 H 1.08997 * 109.47489 * 300.00189 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3461 1.9915 1.1812 5 1 2.0695 3.0214 1.3518 6 6 3.0341 1.2864 2.1592 7 7 2.9714 1.6729 3.4159 8 14 4.0485 -0.2109 1.6919 9 1 3.2401 -1.4397 1.8954 10 1 4.4485 -0.1121 0.2652 11 1 5.2636 -0.2710 2.5436 12 6 2.1560 2.1095 -1.2636 13 6 3.5585 1.8841 -1.8321 14 6 3.7021 2.6441 -3.1521 15 7 5.0452 2.4288 -3.6961 16 6 5.4006 3.0050 -4.8614 17 8 4.6088 3.7022 -5.4595 18 6 6.7821 2.7830 -5.4213 19 1 7.2116 1.7984 -5.2364 20 6 7.7371 3.9781 -5.4402 21 6 7.1254 3.4660 -6.7466 22 1 6.3520 4.0756 -7.2138 23 6 8.0455 2.7147 -7.7110 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.4519 1.1800 4.0993 30 1 1.4134 1.7472 -1.9746 31 1 2.0019 3.1741 -1.0881 32 1 4.3012 2.2463 -1.1211 33 1 3.7126 0.8194 -2.0076 34 1 2.9594 2.2815 -3.8628 35 1 3.5478 3.7089 -2.9769 36 1 5.6784 1.8708 -3.2179 37 1 7.3661 4.9251 -5.0480 38 1 8.7950 3.7798 -5.2681 39 1 7.5856 1.7656 -7.9867 40 1 8.2019 3.3160 -8.6065 41 1 9.0039 2.5271 -7.2269 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479850708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:05:29 Heat of formation + Delta-G solvation = -29.510566 kcal Electronic energy + Delta-G solvation = -18682.491584 eV Core-core repulsion = 15790.453032 eV Total energy + Delta-G solvation = -2892.038551 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.03542 -38.50257 -37.79423 -36.21974 -33.98910 -32.93786 -30.72220 -29.58720 -27.40858 -25.37071 -24.46205 -23.14866 -21.96925 -21.62014 -20.77052 -18.71775 -18.37990 -17.28561 -17.06389 -16.61402 -16.11606 -15.65450 -15.29848 -15.04861 -14.92360 -14.63560 -14.14064 -14.13338 -13.69607 -13.56156 -13.22112 -12.97972 -12.91649 -12.82699 -12.58664 -12.47336 -12.31728 -12.13498 -11.70957 -11.52323 -11.40335 -11.34226 -11.08114 -10.82854 -10.62855 -10.11938 -8.70722 -8.19615 -5.61234 1.33685 1.41996 1.46017 1.54480 2.14058 2.44412 2.85089 3.05565 3.36860 3.69421 3.78580 3.86939 4.08862 4.16147 4.25095 4.33704 4.41890 4.44022 4.63261 4.64381 4.73850 4.76001 4.83188 4.86632 4.93134 4.94725 5.01601 5.04955 5.19675 5.21184 5.27987 5.37790 5.42366 5.46870 5.51908 5.97890 6.21171 6.53100 7.03306 7.20626 7.64892 8.08918 9.00315 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.028169 B = 0.004075 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.747695 B = 6869.606226 C = 7277.080260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.123 3.877 3 N -0.616 5.616 4 C -0.259 4.259 5 H 0.033 0.967 6 C -0.018 4.018 7 N -0.951 5.951 8 Si 0.943 3.057 9 H -0.279 1.279 10 H -0.244 1.244 11 H -0.310 1.310 12 C 0.151 3.849 13 C -0.135 4.135 14 C 0.131 3.869 15 N -0.717 5.717 16 C 0.534 3.466 17 O -0.590 6.590 18 C -0.197 4.197 19 H 0.149 0.851 20 C -0.140 4.140 21 C -0.127 4.127 22 H 0.093 0.907 23 C -0.118 4.118 24 H 0.067 0.933 25 H 0.029 0.971 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.033 0.967 29 H 0.262 0.738 30 H 0.068 0.932 31 H 0.042 0.958 32 H 0.052 0.948 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.054 0.946 36 H 0.413 0.587 37 H 0.085 0.915 38 H 0.132 0.868 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.692 -2.758 -19.570 22.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.001 4.001 3 N -0.339 5.339 4 C -0.389 4.389 5 H 0.051 0.949 6 C -0.215 4.215 7 N -0.595 5.595 8 Si 0.770 3.230 9 H -0.206 1.206 10 H -0.167 1.167 11 H -0.239 1.239 12 C 0.025 3.975 13 C -0.176 4.176 14 C 0.006 3.994 15 N -0.368 5.368 16 C 0.322 3.678 17 O -0.471 6.471 18 C -0.218 4.218 19 H 0.166 0.834 20 C -0.177 4.177 21 C -0.145 4.145 22 H 0.111 0.889 23 C -0.175 4.175 24 H 0.086 0.914 25 H 0.048 0.952 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.051 0.949 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.249 0.751 37 H 0.104 0.896 38 H 0.150 0.850 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 9.142 -2.295 -19.824 21.950 hybrid contribution 0.424 -0.577 1.007 1.235 sum 9.567 -2.872 -18.817 21.303 Atomic orbital electron populations 1.22139 0.97273 1.01120 1.00979 1.21260 0.94092 0.85502 0.99260 1.44240 1.75170 1.12170 1.02317 1.18592 1.30363 0.97459 0.92460 0.94910 1.26219 0.98676 1.01675 0.94897 1.70025 1.44451 1.43993 1.00986 0.85834 0.78187 0.79703 0.79261 1.20596 1.16706 1.23871 1.20891 0.94048 0.96025 0.86524 1.22243 1.00682 1.00064 0.94571 1.21217 0.83714 0.99847 0.94588 1.46007 1.16088 1.51572 1.23084 1.20313 0.89040 0.78228 0.80230 1.90659 1.54565 1.40955 1.60943 1.22384 0.93170 1.01421 1.04818 0.83368 1.23214 0.98992 0.95514 0.99990 1.22421 1.01470 1.01472 0.89172 0.88915 1.21400 0.98193 0.99721 0.98222 0.91409 0.95159 0.92234 0.91788 0.94864 0.92879 0.91392 0.93940 0.92933 0.91565 0.91443 0.92752 0.75072 0.89628 0.85035 0.91785 0.91021 0.90763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.47 10.24 71.98 0.74 -4.74 16 2 C 0.12 4.94 5.05 86.38 0.44 5.37 16 3 N -0.62 -27.70 2.00 -702.03 -1.40 -29.10 16 4 C -0.26 -14.42 9.87 84.03 0.83 -13.59 16 5 H 0.03 2.07 8.06 -2.91 -0.02 2.05 16 6 C -0.02 -1.04 5.23 84.86 0.44 -0.59 16 7 N -0.95 -59.13 13.97 21.65 0.30 -58.83 16 8 Si 0.94 44.40 25.26 68.60 1.73 46.13 16 9 H -0.28 -12.69 6.73 99.48 0.67 -12.02 16 10 H -0.24 -10.42 7.11 99.48 0.71 -9.72 16 11 H -0.31 -14.94 7.11 99.48 0.71 -14.23 16 12 C 0.15 5.52 5.69 86.38 0.49 6.01 16 13 C -0.14 -4.31 5.65 30.59 0.17 -4.14 16 14 C 0.13 3.70 5.67 86.38 0.49 4.19 16 15 N -0.72 -17.79 5.56 -463.06 -2.57 -20.36 16 16 C 0.53 14.26 7.61 87.66 0.67 14.93 16 17 O -0.59 -20.71 16.26 -3.04 -0.05 -20.76 16 18 C -0.20 -3.62 5.91 -11.54 -0.07 -3.69 16 19 H 0.15 1.92 8.14 -2.39 -0.02 1.90 16 20 C -0.14 -2.20 9.88 30.62 0.30 -1.90 16 21 C -0.13 -2.19 5.92 -10.77 -0.06 -2.26 16 22 H 0.09 2.06 7.67 -2.39 -0.02 2.04 16 23 C -0.12 -1.34 10.19 71.98 0.73 -0.61 16 24 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 25 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.06 2.17 8.11 -2.39 -0.02 2.15 16 28 H 0.03 1.48 4.07 -2.39 -0.01 1.47 16 29 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 30 H 0.07 2.13 8.07 -2.39 -0.02 2.11 16 31 H 0.04 1.64 8.04 -2.39 -0.02 1.62 16 32 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 33 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 36 H 0.41 8.27 8.47 -92.71 -0.79 7.49 16 37 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 38 H 0.13 1.35 8.05 -2.38 -0.02 1.33 16 39 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 40 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.07 0.62 7.90 -2.39 -0.02 0.60 16 Total: -1.00 -70.44 337.22 3.35 -67.09 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 0.17 Total: 16.84 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: 5.17 Total: -1.01 kcal Atomic # 7 Polarization: -104.62 SS G_CDS: -3.67 Total: -108.29 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -0.05 Total: -20.76 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 1.73 Total: 46.13 kcal Total: -70.44 3.35 -67.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479850708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.578 kcal (2) G-P(sol) polarization free energy of solvation -70.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds