Wall clock time and date at job start Sun Mar 29 2020 23:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47368 * 2 1 4 4 C 1.53008 * 109.47082 * 240.00755 * 2 1 3 5 5 N 1.46499 * 109.46913 * 184.99827 * 4 2 1 6 6 C 1.36941 * 119.99718 * 179.97438 * 5 4 2 7 7 H 1.08003 * 120.00085 * 0.02562 * 6 5 4 8 8 C 1.38811 * 119.99981 * 180.02562 * 6 5 4 9 9 N 1.31619 * 120.00222 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 119.99938 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47171 * 90.00189 * 10 8 6 12 12 H 1.48501 * 109.47058 * 209.99636 * 10 8 6 13 13 H 1.48499 * 109.47453 * 329.99794 * 10 8 6 14 14 N 1.46502 * 109.47349 * 120.00625 * 2 1 3 15 15 C 1.46499 * 120.00062 * 60.00143 * 14 2 1 16 16 C 1.34779 * 119.99726 * 239.99897 * 14 2 1 17 17 O 1.21279 * 120.00410 * 359.97438 * 16 14 2 18 18 C 1.50703 * 119.99541 * 179.97438 * 16 14 2 19 19 C 1.53000 * 109.46653 * 179.97438 * 18 16 14 20 20 C 1.53777 * 113.62027 * 274.13576 * 19 18 16 21 21 C 1.53950 * 87.02317 * 220.05276 * 20 19 18 22 22 C 1.53774 * 87.11180 * 25.36113 * 21 20 19 23 23 H 1.09000 * 109.47154 * 299.98961 * 1 2 3 24 24 H 1.08998 * 109.47159 * 59.99687 * 1 2 3 25 25 H 1.09003 * 109.46919 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46861 * 304.99659 * 4 2 1 27 27 H 1.08987 * 109.47114 * 64.99842 * 4 2 1 28 28 H 0.96995 * 120.00517 * 0.02562 * 5 4 2 29 29 H 0.97001 * 120.00364 * 180.02562 * 9 8 6 30 30 H 1.09002 * 109.47391 * 89.99876 * 15 14 2 31 31 H 1.09001 * 109.46813 * 329.99933 * 15 14 2 32 32 H 1.09004 * 109.47041 * 210.00060 * 15 14 2 33 33 H 1.08996 * 109.47057 * 299.99739 * 18 16 14 34 34 H 1.08996 * 109.47084 * 60.00703 * 18 16 14 35 35 H 1.09003 * 112.84888 * 45.34192 * 19 18 16 36 36 H 1.09000 * 113.61319 * 334.57350 * 20 19 18 37 37 H 1.09002 * 113.61258 * 105.46750 * 20 19 18 38 38 H 1.09009 * 113.53380 * 270.81163 * 21 20 19 39 39 H 1.08995 * 113.67035 * 139.93135 * 21 20 19 40 40 H 1.09006 * 113.61763 * 220.09251 * 22 21 20 41 41 H 1.09002 * 113.69236 * 89.19907 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7211 -1.2494 5 7 3.5000 -0.8262 -1.1907 6 6 4.1837 -1.4385 -2.2070 7 1 3.6467 -1.8436 -3.0519 8 6 5.5671 -1.5386 -2.1512 9 7 6.2216 -1.0454 -1.1213 10 14 6.4998 -2.3733 -3.5378 11 1 6.8626 -1.3660 -4.5669 12 1 7.7350 -2.9967 -2.9985 13 1 5.6436 -3.4205 -4.1503 14 7 2.0183 -0.6907 1.1961 15 6 1.6645 -2.0933 1.4278 16 6 2.7932 -0.0358 2.0833 17 8 3.0866 1.1252 1.8912 18 6 3.2951 -0.7462 3.3139 19 6 4.1458 0.2152 4.1464 20 6 5.6195 0.2691 3.7106 21 6 5.9767 0.3222 5.2072 22 6 4.6391 -0.3886 5.4719 23 1 -0.3633 0.5137 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6054 -1.7197 -1.2954 27 1 1.7516 -0.1581 -2.1369 28 1 3.9824 -0.4627 -0.4318 29 1 7.1884 -1.1150 -1.0825 30 1 2.4158 -2.7378 0.9713 31 1 0.6905 -2.3003 0.9844 32 1 1.6239 -2.2855 2.5000 33 1 2.4472 -1.0883 3.9071 34 1 3.9006 -1.6027 3.0175 35 1 3.6872 1.1978 4.2582 36 1 5.9609 -0.6381 3.2122 37 1 5.8808 1.1764 3.1659 38 1 6.0200 1.3348 5.6086 39 1 6.8488 -0.2762 5.4704 40 1 4.1099 -0.0116 6.3472 41 1 4.7104 -1.4762 5.4564 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732416632.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:27:03 Heat of formation + Delta-G solvation = -11.220438 kcal Electronic energy + Delta-G solvation = -19828.546757 eV Core-core repulsion = 16937.301325 eV Total energy + Delta-G solvation = -2891.245432 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.84123 -38.22557 -36.12768 -33.93416 -32.09681 -30.29958 -29.47149 -26.55511 -25.56114 -25.34502 -23.72752 -22.47510 -20.64775 -19.14572 -18.53662 -17.01691 -16.74571 -15.88706 -15.40018 -14.89130 -14.59571 -14.37072 -13.67412 -13.39262 -13.25119 -13.02601 -12.42826 -12.32777 -12.22689 -12.19452 -11.97780 -11.83784 -11.57453 -11.37652 -11.19413 -10.82613 -10.72488 -10.44064 -10.34412 -10.06530 -10.00762 -9.93499 -9.65837 -9.20548 -8.82717 -8.12889 -6.85158 -5.69375 -2.98444 3.16757 3.45048 3.46820 3.50743 3.52288 4.62288 4.71429 4.84178 4.91185 5.09621 5.11002 5.35881 5.39625 5.45719 5.57455 5.60404 5.64690 5.68913 5.72745 5.84500 5.90146 5.97813 6.03264 6.04115 6.14457 6.17407 6.20194 6.24285 6.43344 6.45444 6.53369 6.54571 6.77104 6.80863 7.09802 7.73525 7.88270 8.48193 8.71776 9.59632 10.19310 10.55080 11.52557 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.015555 B = 0.007327 C = 0.005407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.582386 B = 3820.688572 C = 5177.570639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.125 3.875 3 H 0.099 0.901 4 C 0.144 3.856 5 N -0.727 5.727 6 C -0.240 4.240 7 H 0.068 0.932 8 C -0.013 4.013 9 N -0.928 5.928 10 Si 0.905 3.095 11 H -0.290 1.290 12 H -0.292 1.292 13 H -0.283 1.283 14 N -0.601 5.601 15 C 0.081 3.919 16 C 0.518 3.482 17 O -0.541 6.541 18 C -0.128 4.128 19 C -0.093 4.093 20 C -0.130 4.130 21 C -0.144 4.144 22 C -0.137 4.137 23 H 0.054 0.946 24 H 0.066 0.934 25 H 0.057 0.943 26 H 0.019 0.981 27 H 0.026 0.974 28 H 0.387 0.613 29 H 0.254 0.746 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.065 -1.156 11.869 14.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.021 3.979 3 H 0.117 0.883 4 C 0.016 3.984 5 N -0.372 5.372 6 C -0.371 4.371 7 H 0.086 0.914 8 C -0.209 4.209 9 N -0.576 5.576 10 Si 0.736 3.264 11 H -0.218 1.218 12 H -0.219 1.219 13 H -0.209 1.209 14 N -0.334 5.334 15 C -0.063 4.063 16 C 0.307 3.693 17 O -0.418 6.418 18 C -0.168 4.168 19 C -0.111 4.111 20 C -0.168 4.168 21 C -0.181 4.181 22 C -0.175 4.175 23 H 0.073 0.927 24 H 0.085 0.915 25 H 0.076 0.924 26 H 0.037 0.963 27 H 0.043 0.957 28 H 0.221 0.779 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.104 0.896 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.870 -0.635 11.614 14.628 hybrid contribution 0.718 -0.552 -0.693 1.140 sum -8.153 -1.188 10.921 13.680 Atomic orbital electron populations 1.22057 0.95441 1.01892 1.01937 1.21346 0.93048 0.98542 0.84938 0.88330 1.20990 0.87139 0.96646 0.93655 1.42296 0.99691 1.70083 1.25101 1.19210 0.89448 1.29358 0.99123 0.91377 1.24738 0.96430 1.01759 0.98011 1.69690 1.07045 1.50815 1.30052 0.86225 0.79529 0.78994 0.81632 1.21792 1.21854 1.20877 1.47698 1.50997 1.12136 1.22558 1.21704 1.01240 0.82473 1.00839 1.20564 0.77437 0.86942 0.84395 1.90660 1.57009 1.17334 1.76768 1.21695 1.00619 0.99856 0.94613 1.22300 0.95435 0.98947 0.94446 1.22940 0.95204 1.03237 0.95386 1.22832 0.97163 1.00423 0.97704 1.22965 0.97231 1.00128 0.97152 0.92731 0.91525 0.92449 0.96333 0.95667 0.77886 0.93630 0.91822 0.91465 0.91815 0.89613 0.88721 0.88729 0.89823 0.91130 0.90599 0.91770 0.91924 0.90249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.17 37.16 0.34 -1.71 16 2 C 0.12 2.21 2.80 -67.93 -0.19 2.02 16 3 H 0.10 2.01 6.90 -51.93 -0.36 1.65 16 4 C 0.14 3.00 5.56 -4.04 -0.02 2.97 16 5 N -0.73 -19.14 5.43 -59.91 -0.33 -19.46 16 6 C -0.24 -6.88 9.99 -15.06 -0.15 -7.04 16 7 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 8 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 9 N -0.93 -28.74 13.06 55.49 0.72 -28.02 16 10 Si 0.90 22.82 29.55 -169.99 -5.02 17.80 16 11 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 12 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 13 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 14 N -0.60 -10.17 2.24 -173.93 -0.39 -10.56 16 15 C 0.08 1.10 9.40 59.85 0.56 1.66 16 16 C 0.52 9.46 7.38 -10.98 -0.08 9.37 16 17 O -0.54 -11.87 15.12 5.56 0.08 -11.79 16 18 C -0.13 -1.83 4.08 -27.88 -0.11 -1.94 16 19 C -0.09 -1.32 3.11 -89.81 -0.28 -1.60 16 20 C -0.13 -2.04 7.65 -25.83 -0.20 -2.24 16 21 C -0.14 -1.77 8.09 -25.83 -0.21 -1.98 16 22 C -0.14 -1.56 7.65 -25.92 -0.20 -1.76 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.06 0.68 6.66 -51.93 -0.35 0.34 16 26 H 0.02 0.38 7.84 -51.93 -0.41 -0.03 16 27 H 0.03 0.53 8.14 -51.94 -0.42 0.11 16 28 H 0.39 11.04 7.06 -40.82 -0.29 10.75 16 29 H 0.25 7.61 8.31 -40.82 -0.34 7.28 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.07 0.79 6.43 -51.93 -0.33 0.45 16 32 H 0.06 0.68 6.44 -51.93 -0.33 0.34 16 33 H 0.09 0.97 7.40 -51.93 -0.38 0.58 16 34 H 0.09 1.38 7.84 -51.93 -0.41 0.97 16 35 H 0.09 1.44 7.73 -51.93 -0.40 1.04 16 36 H 0.08 1.41 7.92 -51.93 -0.41 1.00 16 37 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.08 0.87 8.14 -51.92 -0.42 0.45 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 LS Contribution 328.68 15.07 4.95 4.95 Total: -1.00 -33.21 328.68 -7.63 -40.84 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -7.02 Total: 8.95 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -0.63 Total: -2.72 kcal Atomic # 7 Polarization: -58.05 SS G_CDS: 0.01 Total: -58.04 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.08 Total: -11.79 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.21 -7.63 -40.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732416632.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.624 kcal (2) G-P(sol) polarization free energy of solvation -33.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds