Wall clock time and date at job start Mon Mar 30 2020 00:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47592 * 2 1 4 4 C 1.53006 * 109.46626 * 120.00035 * 2 1 3 5 5 N 1.46905 * 109.46684 * 174.99707 * 4 2 1 6 6 C 1.46954 * 110.99861 * 293.79643 * 5 4 2 7 7 C 1.53058 * 109.36139 * 176.81180 * 6 5 4 8 8 N 1.46957 * 109.36270 * 58.40531 * 7 6 5 9 9 C 1.46899 * 111.00226 * 176.80899 * 8 7 6 10 10 C 1.52995 * 109.47279 * 293.80068 * 9 8 7 11 11 C 1.53001 * 109.47150 * 179.97438 * 10 9 8 12 12 C 1.50705 * 109.46697 * 179.97438 * 11 10 9 13 13 H 1.07996 * 120.00261 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99519 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99962 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99625 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.47084 * 90.00234 * 16 14 12 18 18 H 1.48506 * 109.46888 * 209.99885 * 16 14 12 19 19 H 1.48497 * 109.47307 * 330.00004 * 16 14 12 20 20 C 1.46958 * 110.87886 * 300.67768 * 8 7 6 21 21 C 1.46957 * 110.99740 * 170.00084 * 5 4 2 22 22 H 1.09000 * 109.47160 * 300.00333 * 1 2 3 23 23 H 1.09002 * 109.46719 * 60.00054 * 1 2 3 24 24 H 1.08993 * 109.47839 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47160 * 239.99666 * 2 1 3 26 26 H 1.09002 * 109.46777 * 300.00227 * 3 2 1 27 27 H 1.09000 * 109.47140 * 59.99654 * 3 2 1 28 28 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.46794 * 294.99833 * 4 2 1 30 30 H 1.09000 * 109.47314 * 54.99967 * 4 2 1 31 31 H 1.08996 * 109.49296 * 296.77672 * 6 5 4 32 32 H 1.08999 * 109.48718 * 56.85111 * 6 5 4 33 33 H 1.08999 * 109.49102 * 298.43546 * 7 6 5 34 34 H 1.08999 * 109.48763 * 178.37088 * 7 6 5 35 35 H 1.09006 * 109.46778 * 53.79527 * 9 8 7 36 36 H 1.09000 * 109.47324 * 173.79464 * 9 8 7 37 37 H 1.09000 * 109.46923 * 299.99909 * 10 9 8 38 38 H 1.09000 * 109.47436 * 59.99464 * 10 9 8 39 39 H 1.09000 * 109.46629 * 299.99633 * 11 10 9 40 40 H 1.08998 * 109.47293 * 60.00082 * 11 10 9 41 41 H 0.97003 * 119.99817 * 180.02562 * 15 14 12 42 42 H 1.08996 * 109.48921 * 299.35044 * 20 8 7 43 43 H 1.09000 * 109.49126 * 179.28821 * 20 8 7 44 44 H 1.09003 * 109.48825 * 303.15939 * 21 5 4 45 45 H 1.08999 * 109.49094 * 63.21977 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.5040 -0.8268 1.1905 6 6 3.9249 -1.7031 0.0885 7 6 5.4534 -1.7233 0.0117 8 7 5.9994 -2.1934 1.2925 9 6 7.4634 -2.2990 1.2338 10 6 7.8562 -3.4011 0.2480 11 6 9.3810 -3.5106 0.1864 12 6 9.7677 -4.5968 -0.7842 13 1 9.0025 -5.1529 -1.3052 14 6 11.0986 -4.8796 -1.0077 15 7 12.0304 -4.2013 -0.3743 16 14 11.5780 -6.2254 -2.2112 17 1 11.7299 -5.6439 -3.5692 18 1 12.8643 -6.8340 -1.7865 19 1 10.5209 -7.2681 -2.2346 20 6 5.5784 -1.3171 2.3946 21 6 4.0499 -1.2969 2.4713 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.6767 1.9563 -0.8900 27 1 1.6768 1.9563 0.8900 28 1 3.1301 1.4424 0.0005 29 1 1.7515 -0.1583 2.1370 30 1 1.6052 -1.7198 1.2952 31 1 3.5564 -2.7134 0.2660 32 1 3.5186 -1.3272 -0.8505 33 1 5.8206 -0.7176 -0.1930 34 1 5.7686 -2.3953 -0.7865 35 1 7.8832 -1.3490 0.9027 36 1 7.8502 -2.5418 2.2235 37 1 7.4364 -4.3511 0.5791 38 1 7.4694 -3.1583 -0.7417 39 1 9.8003 -2.5606 -0.1449 40 1 9.7682 -3.7534 1.1760 41 1 12.9667 -4.4000 -0.5318 42 1 5.9470 -0.3069 2.2170 43 1 5.9846 -1.6929 3.3336 44 1 3.7347 -0.6249 3.2696 45 1 3.6828 -2.3026 2.6760 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049856496.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:02:53 Heat of formation + Delta-G solvation = -16.966532 kcal Electronic energy + Delta-G solvation = -19231.804912 eV Core-core repulsion = 16476.143406 eV Total energy + Delta-G solvation = -2755.661507 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.44686 -36.93929 -34.62009 -33.22156 -31.26636 -30.81464 -28.06613 -27.28756 -25.80965 -23.90286 -23.66765 -22.10026 -20.11236 -19.89756 -19.54074 -16.56321 -16.06937 -15.48618 -15.04729 -14.93169 -14.59644 -14.43641 -14.18585 -14.14269 -13.62224 -13.15256 -12.78996 -12.46473 -12.28797 -12.23973 -11.96695 -11.63653 -11.40927 -11.21708 -11.17791 -11.10587 -10.99257 -10.78962 -10.75803 -10.57497 -10.37658 -10.30576 -9.56088 -9.28811 -9.01807 -8.40115 -8.31169 -8.00248 -5.96558 -3.98440 3.34210 3.40198 3.44106 3.78690 4.17554 4.49779 4.56923 4.75266 4.89203 4.99886 5.15453 5.19514 5.34599 5.37610 5.39182 5.40369 5.45733 5.50102 5.58139 5.61683 5.70099 5.77555 5.79555 5.81619 5.92401 5.96287 6.02310 6.09882 6.13347 6.17361 6.25574 6.36680 6.74562 6.79213 6.98352 6.99677 7.16869 7.41381 7.45737 7.72393 7.87811 8.04297 8.47755 9.08864 9.65348 11.14960 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.039371 B = 0.003343 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.012222 B = 8373.621665 C = 8733.807209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C -0.137 4.137 4 C 0.060 3.940 5 N -0.538 5.538 6 C 0.056 3.944 7 C 0.055 3.945 8 N -0.541 5.541 9 C 0.057 3.943 10 C -0.104 4.104 11 C 0.022 3.978 12 C -0.518 4.518 13 H 0.055 0.945 14 C 0.055 3.945 15 N -0.897 5.897 16 Si 0.892 3.108 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 C 0.056 3.944 21 C 0.060 3.940 22 H 0.053 0.947 23 H 0.055 0.945 24 H 0.052 0.948 25 H 0.071 0.929 26 H 0.045 0.955 27 H 0.048 0.952 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.032 0.968 31 H 0.040 0.960 32 H 0.078 0.922 33 H 0.038 0.962 34 H 0.086 0.914 35 H 0.029 0.971 36 H 0.069 0.931 37 H 0.054 0.946 38 H 0.046 0.954 39 H 0.013 0.987 40 H 0.015 0.985 41 H 0.260 0.740 42 H 0.038 0.962 43 H 0.076 0.924 44 H 0.074 0.926 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.215 9.415 3.706 23.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.195 4.195 4 C -0.068 4.068 5 N -0.263 5.263 6 C -0.072 4.072 7 C -0.073 4.073 8 N -0.266 5.266 9 C -0.070 4.070 10 C -0.142 4.142 11 C -0.016 4.016 12 C -0.556 4.556 13 H 0.073 0.927 14 C -0.145 4.145 15 N -0.537 5.537 16 Si 0.719 3.281 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.072 4.072 21 C -0.068 4.068 22 H 0.072 0.928 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.089 0.911 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.096 0.904 33 H 0.056 0.944 34 H 0.104 0.896 35 H 0.047 0.953 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.032 0.968 40 H 0.034 0.966 41 H 0.069 0.931 42 H 0.056 0.944 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -21.019 9.428 3.740 23.338 hybrid contribution 0.408 -0.724 -0.612 1.033 sum -20.611 8.703 3.128 22.591 Atomic orbital electron populations 1.21821 0.95311 1.01543 1.01775 1.21151 0.94944 0.97246 0.98076 1.21710 1.02284 0.94839 1.00631 1.22157 0.87389 0.98710 0.98499 1.62152 1.09363 1.50513 1.04270 1.22225 0.95669 0.94828 0.94433 1.22181 0.93307 0.99115 0.92696 1.62234 1.11685 1.49223 1.03438 1.22273 0.84760 0.98913 1.01049 1.21644 0.99684 0.96421 0.96446 1.19073 0.88629 0.96835 0.97044 1.21260 0.91704 1.18365 1.24269 0.92703 1.25032 0.96741 0.96526 0.96243 1.69970 1.00153 1.41034 1.42496 0.86602 0.77895 0.82208 0.81350 1.20707 1.21253 1.19861 1.22119 0.94271 0.95488 0.95339 1.22133 0.94934 0.98673 0.91103 0.92756 0.92562 0.92905 0.91078 0.93550 0.93284 0.91448 0.91036 0.95011 0.94149 0.90412 0.94375 0.89611 0.95296 0.91289 0.92709 0.93519 0.96835 0.96639 0.93061 0.94384 0.90525 0.90779 0.94166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.19 37.16 0.34 -0.70 16 2 C -0.10 -0.81 2.85 -90.62 -0.26 -1.07 16 3 C -0.14 -1.20 9.08 37.16 0.34 -0.86 16 4 C 0.06 0.57 4.35 -3.82 -0.02 0.55 16 5 N -0.54 -6.11 4.16 -234.46 -0.98 -7.08 16 6 C 0.06 0.69 5.42 -3.76 -0.02 0.67 16 7 C 0.06 0.80 5.41 -3.76 -0.02 0.78 16 8 N -0.54 -8.47 4.71 -234.47 -1.10 -9.58 16 9 C 0.06 1.03 4.96 -3.83 -0.02 1.01 16 10 C -0.10 -2.21 5.09 -26.73 -0.14 -2.35 16 11 C 0.02 0.57 4.97 -27.88 -0.14 0.44 16 12 C -0.52 -14.96 9.11 -34.44 -0.31 -15.28 16 13 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -27.40 13.29 55.43 0.74 -26.66 16 16 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 20 C 0.06 0.75 5.61 -3.77 -0.02 0.73 16 21 C 0.06 0.68 5.61 -3.77 -0.02 0.66 16 22 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 23 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.07 0.65 6.28 -51.93 -0.33 0.33 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.69 7.75 -51.93 -0.40 0.29 16 29 H 0.07 0.63 8.03 -51.93 -0.42 0.21 16 30 H 0.03 0.31 8.12 -51.93 -0.42 -0.11 16 31 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.86 6.25 -51.93 -0.32 0.53 16 33 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.09 1.31 6.34 -51.93 -0.33 0.98 16 35 H 0.03 0.53 8.12 -51.93 -0.42 0.11 16 36 H 0.07 1.23 8.03 -51.93 -0.42 0.82 16 37 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.05 0.98 6.49 -51.93 -0.34 0.64 16 39 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.08 0.96 8.07 -51.93 -0.42 0.54 16 44 H 0.07 0.73 8.07 -51.93 -0.42 0.31 16 45 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 345.41 15.07 5.21 5.21 Total: -1.00 -30.07 345.41 -10.39 -40.46 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -8.85 Total: -5.40 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: -0.38 Total: -13.90 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: -1.34 Total: -43.32 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.07 -10.39 -40.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049856496.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.494 kcal (2) G-P(sol) polarization free energy of solvation -30.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds