Wall clock time and date at job start Mon Mar 30 2020 00:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47592 * 2 1 4 4 C 1.53006 * 109.46626 * 120.00035 * 2 1 3 5 5 N 1.46905 * 109.46684 * 174.99707 * 4 2 1 6 6 C 1.46954 * 110.99861 * 293.79643 * 5 4 2 7 7 C 1.53058 * 109.36139 * 176.81180 * 6 5 4 8 8 N 1.46957 * 109.36270 * 58.40531 * 7 6 5 9 9 C 1.46899 * 111.00226 * 176.80899 * 8 7 6 10 10 C 1.52995 * 109.47279 * 293.80068 * 9 8 7 11 11 C 1.53001 * 109.47150 * 179.97438 * 10 9 8 12 12 C 1.50705 * 109.46697 * 179.97438 * 11 10 9 13 13 H 1.07996 * 120.00261 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99519 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99962 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99625 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.47084 * 90.00234 * 16 14 12 18 18 H 1.48506 * 109.46888 * 209.99885 * 16 14 12 19 19 H 1.48497 * 109.47307 * 330.00004 * 16 14 12 20 20 C 1.46958 * 110.87886 * 300.67768 * 8 7 6 21 21 C 1.46957 * 110.99740 * 170.00084 * 5 4 2 22 22 H 1.09000 * 109.47160 * 300.00333 * 1 2 3 23 23 H 1.09002 * 109.46719 * 60.00054 * 1 2 3 24 24 H 1.08993 * 109.47839 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47160 * 239.99666 * 2 1 3 26 26 H 1.09002 * 109.46777 * 300.00227 * 3 2 1 27 27 H 1.09000 * 109.47140 * 59.99654 * 3 2 1 28 28 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.46794 * 294.99833 * 4 2 1 30 30 H 1.09000 * 109.47314 * 54.99967 * 4 2 1 31 31 H 1.08996 * 109.49296 * 296.77672 * 6 5 4 32 32 H 1.08999 * 109.48718 * 56.85111 * 6 5 4 33 33 H 1.08999 * 109.49102 * 298.43546 * 7 6 5 34 34 H 1.08999 * 109.48763 * 178.37088 * 7 6 5 35 35 H 1.09006 * 109.46778 * 53.79527 * 9 8 7 36 36 H 1.09000 * 109.47324 * 173.79464 * 9 8 7 37 37 H 1.09000 * 109.46923 * 299.99909 * 10 9 8 38 38 H 1.09000 * 109.47436 * 59.99464 * 10 9 8 39 39 H 1.09000 * 109.46629 * 299.99633 * 11 10 9 40 40 H 1.08998 * 109.47293 * 60.00082 * 11 10 9 41 41 H 0.97003 * 119.99817 * 180.02562 * 15 14 12 42 42 H 1.08996 * 109.48921 * 299.35044 * 20 8 7 43 43 H 1.09000 * 109.49126 * 179.28821 * 20 8 7 44 44 H 1.09003 * 109.48825 * 303.15939 * 21 5 4 45 45 H 1.08999 * 109.49094 * 63.21977 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.5040 -0.8268 1.1905 6 6 3.9249 -1.7031 0.0885 7 6 5.4534 -1.7233 0.0117 8 7 5.9994 -2.1934 1.2925 9 6 7.4634 -2.2990 1.2338 10 6 7.8562 -3.4011 0.2480 11 6 9.3810 -3.5106 0.1864 12 6 9.7677 -4.5968 -0.7842 13 1 9.0025 -5.1529 -1.3052 14 6 11.0986 -4.8796 -1.0077 15 7 12.0304 -4.2013 -0.3743 16 14 11.5780 -6.2254 -2.2112 17 1 11.7299 -5.6439 -3.5692 18 1 12.8643 -6.8340 -1.7865 19 1 10.5209 -7.2681 -2.2346 20 6 5.5784 -1.3171 2.3946 21 6 4.0499 -1.2969 2.4713 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.6767 1.9563 -0.8900 27 1 1.6768 1.9563 0.8900 28 1 3.1301 1.4424 0.0005 29 1 1.7515 -0.1583 2.1370 30 1 1.6052 -1.7198 1.2952 31 1 3.5564 -2.7134 0.2660 32 1 3.5186 -1.3272 -0.8505 33 1 5.8206 -0.7176 -0.1930 34 1 5.7686 -2.3953 -0.7865 35 1 7.8832 -1.3490 0.9027 36 1 7.8502 -2.5418 2.2235 37 1 7.4364 -4.3511 0.5791 38 1 7.4694 -3.1583 -0.7417 39 1 9.8003 -2.5606 -0.1449 40 1 9.7682 -3.7534 1.1760 41 1 12.9667 -4.4000 -0.5318 42 1 5.9470 -0.3069 2.2170 43 1 5.9846 -1.6929 3.3336 44 1 3.7347 -0.6249 3.2696 45 1 3.6828 -2.3026 2.6760 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049856496.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:02:52 Heat of formation + Delta-G solvation = -35.335201 kcal Electronic energy + Delta-G solvation = -19232.601437 eV Core-core repulsion = 16476.143406 eV Total energy + Delta-G solvation = -2756.458032 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.47809 -37.98900 -36.02856 -34.85346 -33.01427 -31.89722 -29.47146 -27.90824 -27.36322 -25.15446 -24.73177 -23.70331 -21.63359 -20.94932 -20.51245 -18.51196 -17.35336 -16.52808 -16.50923 -16.10885 -15.86201 -15.58395 -15.42788 -15.36317 -14.70738 -14.37284 -14.16489 -13.67632 -13.47615 -13.25085 -13.17548 -12.95339 -12.73950 -12.62240 -12.50048 -12.37774 -12.24166 -12.05115 -11.93450 -11.76639 -11.58614 -11.41735 -11.37961 -11.16663 -11.01328 -10.55284 -9.37857 -9.20262 -8.20434 -6.31576 1.39688 1.41350 1.52723 2.40769 2.89957 2.95990 3.12598 3.83696 3.90550 4.02772 4.08957 4.18399 4.26319 4.31573 4.37188 4.46702 4.50736 4.57315 4.68892 4.71726 4.73470 4.82245 4.87135 4.87671 4.90389 4.96182 4.99945 5.06524 5.09430 5.12413 5.16659 5.25992 5.31468 5.47839 5.51428 5.54909 5.73493 5.85259 5.99830 6.02962 6.20114 6.21428 6.28289 6.85160 7.37637 8.91635 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.039371 B = 0.003343 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.012222 B = 8373.621665 C = 8733.807209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.094 4.094 3 C -0.133 4.133 4 C 0.063 3.937 5 N -0.544 5.544 6 C 0.065 3.935 7 C 0.055 3.945 8 N -0.546 5.546 9 C 0.069 3.931 10 C -0.087 4.087 11 C 0.026 3.974 12 C -0.543 4.543 13 H 0.059 0.941 14 C -0.002 4.002 15 N -0.934 5.934 16 Si 0.966 3.034 17 H -0.271 1.271 18 H -0.281 1.281 19 H -0.263 1.263 20 C 0.055 3.945 21 C 0.065 3.935 22 H 0.060 0.940 23 H 0.060 0.940 24 H 0.054 0.946 25 H 0.063 0.937 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.048 0.952 29 H 0.082 0.918 30 H 0.032 0.968 31 H 0.034 0.966 32 H 0.090 0.910 33 H 0.031 0.969 34 H 0.074 0.926 35 H 0.022 0.978 36 H 0.069 0.931 37 H 0.050 0.950 38 H 0.049 0.951 39 H -0.011 1.011 40 H -0.008 1.008 41 H 0.264 0.736 42 H 0.034 0.966 43 H 0.084 0.916 44 H 0.096 0.904 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.942 9.235 3.423 24.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.113 4.113 3 C -0.191 4.191 4 C -0.065 4.065 5 N -0.269 5.269 6 C -0.063 4.063 7 C -0.073 4.073 8 N -0.271 5.271 9 C -0.059 4.059 10 C -0.125 4.125 11 C -0.011 4.011 12 C -0.581 4.581 13 H 0.077 0.923 14 C -0.199 4.199 15 N -0.575 5.575 16 Si 0.790 3.210 17 H -0.197 1.197 18 H -0.206 1.206 19 H -0.187 1.187 20 C -0.073 4.073 21 C -0.063 4.063 22 H 0.079 0.921 23 H 0.079 0.921 24 H 0.073 0.927 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.100 0.900 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.108 0.892 33 H 0.050 0.950 34 H 0.092 0.908 35 H 0.040 0.960 36 H 0.087 0.913 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.008 0.992 40 H 0.010 0.990 41 H 0.073 0.927 42 H 0.052 0.948 43 H 0.102 0.898 44 H 0.114 0.886 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -22.774 9.257 3.462 24.826 hybrid contribution 0.939 -0.620 -0.496 1.230 sum -21.834 8.637 2.966 23.667 Atomic orbital electron populations 1.21781 0.93999 1.01896 1.02370 1.21140 0.95991 0.96826 0.97306 1.21661 1.01034 0.95152 1.01213 1.22205 0.85901 0.98990 0.99398 1.62169 1.10795 1.50031 1.03893 1.22110 0.93743 0.94836 0.95581 1.22190 0.95034 0.98258 0.91834 1.62199 1.09699 1.50480 1.04742 1.21995 0.86746 0.97222 0.99897 1.21377 0.95959 0.97529 0.97677 1.18964 0.91954 0.95037 0.95159 1.21690 0.92325 1.19139 1.24941 0.92305 1.26002 0.96666 0.99096 0.98146 1.70100 1.00648 1.42710 1.43996 0.85433 0.77754 0.78987 0.78792 1.19687 1.20627 1.18745 1.22210 0.95812 0.94675 0.94574 1.22116 0.93324 0.99081 0.91817 0.92102 0.92059 0.92684 0.91821 0.92948 0.92761 0.93251 0.90007 0.95000 0.94774 0.89155 0.95042 0.90779 0.95960 0.91254 0.93082 0.93256 0.99236 0.98965 0.92739 0.94793 0.89787 0.88598 0.94577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.19 71.98 0.66 -1.03 16 2 C -0.09 -1.42 2.85 -10.79 -0.03 -1.45 16 3 C -0.13 -2.09 9.08 71.98 0.65 -1.44 16 4 C 0.06 1.04 4.35 86.30 0.38 1.41 16 5 N -0.54 -11.43 4.16 -895.70 -3.73 -15.16 16 6 C 0.07 1.53 5.42 86.31 0.47 1.99 16 7 C 0.06 1.58 5.41 86.31 0.47 2.05 16 8 N -0.55 -16.87 4.71 -895.71 -4.22 -21.09 16 9 C 0.07 2.52 4.96 86.30 0.43 2.95 16 10 C -0.09 -3.79 5.09 30.59 0.16 -3.63 16 11 C 0.03 1.44 4.97 29.85 0.15 1.59 16 12 C -0.54 -31.82 9.11 25.60 0.23 -31.58 16 13 H 0.06 3.32 7.74 -2.91 -0.02 3.29 16 14 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 15 N -0.93 -57.94 13.29 21.45 0.28 -57.66 16 16 Si 0.97 45.03 29.54 68.60 2.03 47.05 16 17 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 18 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 19 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 20 C 0.06 1.40 5.61 86.31 0.48 1.89 16 21 C 0.06 1.36 5.61 86.31 0.48 1.84 16 22 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 23 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 24 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.06 1.06 6.28 -2.39 -0.01 1.05 16 26 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.05 0.96 7.75 -2.39 -0.02 0.94 16 29 H 0.08 1.21 8.03 -2.39 -0.02 1.19 16 30 H 0.03 0.54 8.12 -2.39 -0.02 0.52 16 31 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.09 1.87 6.25 -2.39 -0.01 1.86 16 33 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.07 2.27 6.34 -2.39 -0.02 2.26 16 35 H 0.02 0.83 8.12 -2.38 -0.02 0.81 16 36 H 0.07 2.50 8.03 -2.39 -0.02 2.48 16 37 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.05 2.09 6.49 -2.39 -0.02 2.07 16 39 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 40 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 41 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 42 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.08 1.99 8.07 -2.39 -0.02 1.98 16 44 H 0.10 1.62 8.07 -2.39 -0.02 1.60 16 45 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -64.23 345.41 0.25 -63.97 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: 0.90 Total: 7.92 kcal Atomic # 6 Polarization: -30.03 SS G_CDS: 4.99 Total: -25.05 kcal Atomic # 7 Polarization: -86.24 SS G_CDS: -7.66 Total: -93.91 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -64.23 0.25 -63.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049856496.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.639 kcal (2) G-P(sol) polarization free energy of solvation -64.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds