Wall clock time and date at job start Sun Mar 29 2020 23:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36936 * 119.99521 * 2 1 4 4 H 1.08002 * 119.99445 * 202.34461 * 3 2 1 5 5 C 1.38806 * 120.00199 * 22.34786 * 3 2 1 6 6 N 1.31623 * 120.00355 * 11.34575 * 5 3 2 7 7 Si 1.86809 * 119.99791 * 191.34154 * 5 3 2 8 8 H 1.48495 * 109.47040 * 90.00208 * 7 5 3 9 9 H 1.48503 * 109.47016 * 210.00052 * 7 5 3 10 10 H 1.48500 * 109.47099 * 330.00087 * 7 5 3 11 11 C 1.46496 * 119.99974 * 180.02562 * 2 1 3 12 12 C 1.53003 * 109.46762 * 269.99513 * 11 2 1 13 13 N 1.46506 * 109.46771 * 179.97438 * 12 11 2 14 14 C 1.34774 * 119.99541 * 179.97438 * 13 12 11 15 15 O 1.21286 * 120.00359 * 0.27958 * 14 13 12 16 16 C 1.50705 * 119.99959 * 179.97438 * 14 13 12 17 17 C 1.52993 * 109.47320 * 180.02562 * 16 14 13 18 18 C 1.54264 * 110.03304 * 292.91159 * 17 16 14 19 19 C 1.54967 * 104.16035 * 217.13454 * 18 17 16 20 20 C 1.54893 * 102.77283 * 37.88808 * 19 18 17 21 21 C 1.53876 * 110.03247 * 175.69227 * 17 16 14 22 22 H 1.09004 * 109.47055 * 274.21005 * 1 2 3 23 23 H 1.08996 * 109.47370 * 34.20960 * 1 2 3 24 24 H 1.08995 * 109.46998 * 154.21161 * 1 2 3 25 25 H 0.96993 * 119.99717 * 179.97438 * 6 5 3 26 26 H 1.08995 * 109.47184 * 149.99784 * 11 2 1 27 27 H 1.09001 * 109.47050 * 29.99697 * 11 2 1 28 28 H 1.09004 * 109.46911 * 60.00426 * 12 11 2 29 29 H 1.08994 * 109.47652 * 300.00233 * 12 11 2 30 30 H 0.96998 * 119.99972 * 0.02562 * 13 12 11 31 31 H 1.09001 * 109.46919 * 300.00446 * 16 14 13 32 32 H 1.09008 * 109.46696 * 60.00017 * 16 14 13 33 33 H 1.09003 * 110.01804 * 54.30323 * 17 16 14 34 34 H 1.08998 * 110.49027 * 335.77870 * 18 17 16 35 35 H 1.08994 * 110.48851 * 98.42866 * 18 17 16 36 36 H 1.08992 * 110.72441 * 279.57686 * 19 18 17 37 37 H 1.09003 * 110.92512 * 156.29401 * 19 18 17 38 38 H 1.09006 * 110.48359 * 203.40324 * 20 19 18 39 39 H 1.09003 * 110.60051 * 80.82108 * 20 19 18 40 40 H 1.09000 * 110.03478 * 238.57131 * 21 17 16 41 41 H 1.08999 * 110.03076 * 359.95445 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1688 1.2211 -0.3556 5 6 1.5338 2.3429 0.4571 6 7 0.3841 2.2690 1.0937 7 14 2.3367 4.0048 0.1688 8 1 1.8679 4.5632 -1.1249 9 1 1.9681 4.9303 1.2701 10 1 3.8123 3.8419 0.1319 11 6 2.1976 -1.2687 -0.0006 12 6 2.4526 -1.7109 1.4418 13 7 3.1846 -2.9800 1.4412 14 6 3.5219 -3.5638 2.6082 15 8 3.2151 -3.0411 3.6588 16 6 4.2744 -4.8695 2.6077 17 6 4.5296 -5.3116 4.0500 18 6 5.5088 -4.3369 4.7361 19 6 6.3841 -5.2480 5.6335 20 6 6.5671 -6.5144 4.7607 21 6 5.2018 -6.6957 4.0659 22 1 -0.3633 0.0754 1.0249 23 1 -0.3634 0.8498 -0.5777 24 1 -0.3633 -0.9253 -0.4471 25 1 -0.0460 3.0775 1.4133 26 1 3.1499 -1.1382 -0.5143 27 1 1.6084 -2.0281 -0.5147 28 1 1.5002 -1.8415 1.9556 29 1 3.0416 -0.9515 1.9559 30 1 3.4271 -3.3996 0.6010 31 1 3.6843 -5.6287 2.0943 32 1 5.2266 -4.7399 2.0931 33 1 3.5899 -5.3466 4.6013 34 1 6.1241 -3.8287 3.9937 35 1 4.9644 -3.6128 5.3422 36 1 5.8646 -5.4897 6.5607 37 1 7.3463 -4.7803 5.8422 38 1 6.7951 -7.3784 5.3851 39 1 7.3537 -6.3607 4.0220 40 1 4.5889 -7.4021 4.6256 41 1 5.3455 -7.0527 3.0461 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663131819.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:35:28 Heat of formation + Delta-G solvation = -39.733317 kcal Electronic energy + Delta-G solvation = -18815.268308 eV Core-core repulsion = 15922.786465 eV Total energy + Delta-G solvation = -2892.481843 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.69356 -37.81791 -35.97747 -34.03833 -31.76263 -31.11924 -28.73465 -28.22284 -25.95057 -25.60331 -23.00994 -20.81652 -20.62013 -20.21553 -19.44914 -17.02305 -16.69126 -15.78069 -15.50138 -15.14195 -14.85139 -14.66022 -13.94686 -13.46219 -13.40269 -13.27552 -13.04731 -12.42539 -12.26004 -11.96914 -11.32440 -11.20646 -11.12714 -11.03853 -10.88643 -10.85133 -10.79398 -10.67526 -10.57362 -10.47714 -10.26301 -9.98300 -9.89069 -9.42725 -8.59314 -8.52506 -6.81563 -5.73771 -3.21159 2.99521 3.38338 3.44312 3.46490 3.57396 4.48291 4.51449 4.53079 4.64384 5.07641 5.11334 5.22857 5.36660 5.41492 5.49295 5.55595 5.58332 5.65835 5.70378 5.73449 5.80505 5.89441 5.94718 6.00961 6.05567 6.20018 6.29300 6.31535 6.45093 6.71608 6.74710 6.79130 7.02694 7.37238 7.72383 7.80533 7.90072 8.37717 8.61713 9.21671 9.83728 10.31885 11.31325 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.034563 B = 0.003714 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.919706 B = 7536.307253 C = 7941.296049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.597 5.597 3 C -0.261 4.261 4 H 0.070 0.930 5 C 0.003 3.997 6 N -0.906 5.906 7 Si 0.907 3.093 8 H -0.287 1.287 9 H -0.290 1.290 10 H -0.279 1.279 11 C 0.144 3.856 12 C 0.095 3.905 13 N -0.729 5.729 14 C 0.503 3.497 15 O -0.541 6.541 16 C -0.135 4.135 17 C -0.077 4.077 18 C -0.114 4.114 19 C -0.128 4.128 20 C -0.124 4.124 21 C -0.122 4.122 22 H 0.029 0.971 23 H 0.047 0.953 24 H -0.003 1.003 25 H 0.253 0.747 26 H 0.048 0.952 27 H 0.041 0.959 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.394 0.606 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.488 -17.780 2.509 20.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.320 5.320 3 C -0.390 4.390 4 H 0.088 0.912 5 C -0.195 4.195 6 N -0.551 5.551 7 Si 0.737 3.263 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.016 3.984 12 C -0.031 4.031 13 N -0.380 5.380 14 C 0.288 3.712 15 O -0.418 6.418 16 C -0.175 4.175 17 C -0.095 4.095 18 C -0.151 4.151 19 C -0.165 4.165 20 C -0.162 4.162 21 C -0.159 4.159 22 H 0.048 0.952 23 H 0.066 0.934 24 H 0.016 0.984 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.227 0.773 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.097 0.903 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.113 -17.213 3.315 19.756 hybrid contribution 0.427 0.793 -0.445 1.004 sum 9.540 -16.420 2.870 19.206 Atomic orbital electron populations 1.20847 0.82176 0.95722 0.99474 1.43924 1.02063 1.00373 1.85616 1.19235 0.98153 0.85255 1.36362 0.91209 1.25069 0.97669 0.98688 0.98098 1.70070 1.17811 1.27219 1.39958 0.86209 0.78838 0.83883 0.77326 1.21432 1.21657 1.20446 1.20986 0.96268 0.88870 0.92288 1.22470 0.95702 0.83012 1.01909 1.46240 1.58462 1.25326 1.07970 1.20691 0.79805 0.86570 0.84085 1.90696 1.54524 1.65310 1.31248 1.21863 1.01105 0.95445 0.99071 1.21521 0.99736 0.94084 0.94205 1.22399 0.96659 0.97419 0.98648 1.22544 0.99708 0.95917 0.98359 1.22352 0.97203 0.97922 0.98721 1.22238 0.96294 0.96750 1.00648 0.95238 0.93425 0.98407 0.93629 0.93405 0.94056 0.92370 0.91487 0.77338 0.89324 0.89215 0.90297 0.92070 0.90670 0.91701 0.91872 0.92061 0.91806 0.91856 0.91747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.04 9.01 59.85 0.54 4.58 16 2 N -0.60 -15.10 2.93 -181.12 -0.53 -15.63 16 3 C -0.26 -7.21 9.67 -15.06 -0.15 -7.35 16 4 H 0.07 1.88 7.84 -52.49 -0.41 1.47 16 5 C 0.00 0.10 5.13 -17.43 -0.09 0.01 16 6 N -0.91 -26.76 10.59 55.49 0.59 -26.18 16 7 Si 0.91 22.06 29.57 -169.99 -5.03 17.04 16 8 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 9 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 C 0.14 2.88 5.82 -4.04 -0.02 2.86 16 12 C 0.09 1.88 6.00 -4.04 -0.02 1.86 16 13 N -0.73 -11.02 5.56 -60.29 -0.33 -11.35 16 14 C 0.50 7.81 7.61 -10.98 -0.08 7.73 16 15 O -0.54 -10.82 14.79 5.55 0.08 -10.74 16 16 C -0.13 -1.44 4.83 -27.88 -0.13 -1.57 16 17 C -0.08 -0.85 2.55 -89.51 -0.23 -1.07 16 18 C -0.11 -1.36 5.40 -25.03 -0.14 -1.49 16 19 C -0.13 -1.22 6.91 -24.69 -0.17 -1.39 16 20 C -0.12 -1.02 6.83 -25.07 -0.17 -1.20 16 21 C -0.12 -1.04 6.46 -25.62 -0.17 -1.20 16 22 H 0.03 0.80 7.42 -51.93 -0.39 0.41 16 23 H 0.05 1.26 7.19 -51.93 -0.37 0.89 16 24 H 0.00 -0.06 7.84 -51.93 -0.41 -0.46 16 25 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 26 H 0.05 0.91 8.03 -51.93 -0.42 0.49 16 27 H 0.04 0.73 7.86 -51.93 -0.41 0.32 16 28 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 30 H 0.39 4.52 8.47 -40.82 -0.35 4.17 16 31 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.09 0.81 8.02 -51.92 -0.42 0.39 16 33 H 0.08 1.00 7.94 -51.93 -0.41 0.59 16 34 H 0.06 0.74 7.77 -51.93 -0.40 0.34 16 35 H 0.07 1.07 7.63 -51.93 -0.40 0.68 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.48 7.67 -51.93 -0.40 0.08 16 LS Contribution 328.11 15.07 4.94 4.94 Total: -1.00 -32.12 328.11 -8.40 -40.52 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -7.29 Total: -0.36 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -0.83 Total: 1.75 kcal Atomic # 7 Polarization: -52.88 SS G_CDS: -0.28 Total: -53.16 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.08 Total: -10.74 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.03 Total: 17.04 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.12 -8.40 -40.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663131819.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.791 kcal (2) G-P(sol) polarization free energy of solvation -32.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds