Wall clock time and date at job start Sun Mar 29 2020 23:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36935 * 120.00312 * 2 1 4 4 H 1.08007 * 119.99909 * 200.36391 * 3 2 1 5 5 C 1.38808 * 120.00012 * 20.36457 * 3 2 1 6 6 N 1.31620 * 120.00317 * 14.98660 * 5 3 2 7 7 Si 1.86808 * 119.99897 * 194.98777 * 5 3 2 8 8 H 1.48500 * 109.46955 * 85.00284 * 7 5 3 9 9 H 1.48497 * 109.46847 * 205.00308 * 7 5 3 10 10 H 1.48498 * 109.46967 * 325.00020 * 7 5 3 11 11 C 1.46503 * 119.99839 * 179.97438 * 2 1 3 12 12 C 1.52996 * 109.47625 * 270.00114 * 11 2 1 13 13 N 1.46494 * 109.47298 * 179.97438 * 12 11 2 14 14 C 1.34784 * 119.99601 * 180.02562 * 13 12 11 15 15 O 1.21273 * 120.00276 * 0.02562 * 14 13 12 16 16 C 1.50699 * 119.99473 * 179.97438 * 14 13 12 17 17 C 1.53008 * 109.46897 * 179.97438 * 16 14 13 18 18 C 1.52997 * 109.47132 * 180.02562 * 17 16 14 19 19 C 1.52996 * 109.47405 * 180.02562 * 18 17 16 20 20 C 1.53001 * 117.49974 * 243.75020 * 19 18 17 21 21 C 1.52999 * 117.50419 * 175.08492 * 19 18 17 22 22 H 1.08997 * 109.46797 * 275.09674 * 1 2 3 23 23 H 1.09003 * 109.46451 * 35.09263 * 1 2 3 24 24 H 1.09000 * 109.47395 * 155.09260 * 1 2 3 25 25 H 0.96995 * 120.00447 * 180.02562 * 6 5 3 26 26 H 1.09007 * 109.47021 * 149.99836 * 11 2 1 27 27 H 1.09009 * 109.47067 * 30.00381 * 11 2 1 28 28 H 1.09007 * 109.46841 * 59.99347 * 12 11 2 29 29 H 1.09000 * 109.46969 * 300.00382 * 12 11 2 30 30 H 0.96992 * 120.00386 * 0.02562 * 13 12 11 31 31 H 1.09000 * 109.47737 * 300.00125 * 16 14 13 32 32 H 1.08998 * 109.47509 * 60.00192 * 16 14 13 33 33 H 1.08999 * 109.46849 * 300.00229 * 17 16 14 34 34 H 1.08998 * 109.47032 * 60.00359 * 17 16 14 35 35 H 1.09000 * 109.47516 * 300.00328 * 18 17 16 36 36 H 1.09007 * 109.47507 * 60.00035 * 18 17 16 37 37 H 1.09006 * 115.54921 * 29.41588 * 19 18 17 38 38 H 1.08994 * 117.49839 * 359.97438 * 20 19 18 39 39 H 1.08998 * 117.49505 * 145.01855 * 20 19 18 40 40 H 1.08997 * 117.50269 * 214.98302 * 21 19 18 41 41 H 1.09005 * 117.49732 * 0.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1792 1.2150 -0.3255 5 6 1.5208 2.3504 0.4183 6 7 0.3877 2.2837 1.0846 7 14 2.2827 4.0126 0.0356 8 1 1.8684 4.4460 -1.3230 9 1 1.8226 5.0098 1.0351 10 1 3.7626 3.9032 0.0906 11 6 2.1975 -1.2688 0.0006 12 6 2.4525 -1.7099 1.4432 13 7 3.1844 -2.9789 1.4437 14 6 3.5207 -3.5624 2.6112 15 8 3.2171 -3.0371 3.6612 16 6 4.2731 -4.8681 2.6117 17 6 4.5283 -5.3091 4.0544 18 6 5.2927 -6.6345 4.0549 19 6 5.5473 -7.0759 5.4976 20 6 7.0020 -7.1618 5.9638 21 6 6.2011 -8.4421 5.7135 22 1 -0.3633 0.0913 1.0236 23 1 -0.3632 0.8409 -0.5908 24 1 -0.3634 -0.9321 -0.4328 25 1 -0.0520 3.0974 1.3766 26 1 3.1499 -1.1387 -0.5134 27 1 1.6083 -2.0287 -0.5130 28 1 1.5000 -1.8399 1.9571 29 1 3.0415 -0.9501 1.9567 30 1 3.4269 -3.3993 0.6039 31 1 3.6835 -5.6275 2.0981 32 1 5.2257 -4.7388 2.0979 33 1 5.1181 -4.5496 4.5676 34 1 3.5759 -5.4384 4.5686 35 1 4.7033 -7.3942 3.5416 36 1 6.2451 -6.5048 3.5408 37 1 4.8035 -6.7531 6.2262 38 1 7.7776 -6.9043 5.2427 39 1 7.2151 -6.8960 6.9992 40 1 5.8878 -9.0181 6.5842 41 1 6.4503 -9.0265 4.8277 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663254200.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:35:35 Heat of formation + Delta-G solvation = -11.553004 kcal Electronic energy + Delta-G solvation = -18165.705380 eV Core-core repulsion = 15274.445527 eV Total energy + Delta-G solvation = -2891.259853 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.41330 -37.90502 -36.06040 -34.11840 -33.78381 -31.31744 -28.96587 -27.29885 -25.85237 -23.53197 -22.65579 -22.01632 -20.67402 -20.62827 -19.80107 -16.92424 -16.61468 -15.99400 -15.54771 -15.50876 -14.71554 -14.56503 -14.42209 -13.65773 -13.51889 -13.20838 -12.73057 -12.35425 -12.26057 -12.08062 -11.82666 -11.78300 -11.23095 -11.19913 -10.93251 -10.87048 -10.83338 -10.58676 -10.44372 -10.27804 -10.09276 -9.98679 -9.89083 -9.49163 -8.60111 -8.53408 -6.84075 -5.74040 -3.19239 2.96891 3.38752 3.44235 3.46567 3.50246 3.59163 4.38943 4.51192 4.65566 4.67489 4.84324 4.99028 5.08718 5.17076 5.36116 5.40426 5.46708 5.53542 5.58452 5.61798 5.65280 5.74419 5.83975 5.88949 5.99704 6.01782 6.13377 6.28418 6.29082 6.70216 6.73115 6.77631 7.01296 7.35362 7.70929 7.80272 7.87979 8.36270 8.59263 9.20834 9.83814 10.31210 11.31186 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.041424 B = 0.002981 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.773535 B = 9391.506669 C = 9664.176531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.597 5.597 3 C -0.260 4.260 4 H 0.071 0.929 5 C 0.002 3.998 6 N -0.905 5.905 7 Si 0.907 3.093 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.280 1.280 11 C 0.144 3.856 12 C 0.094 3.906 13 N -0.728 5.728 14 C 0.503 3.497 15 O -0.544 6.544 16 C -0.141 4.141 17 C -0.101 4.101 18 C -0.089 4.089 19 C -0.151 4.151 20 C -0.182 4.182 21 C -0.185 4.185 22 H 0.030 0.970 23 H 0.045 0.955 24 H -0.001 1.001 25 H 0.254 0.746 26 H 0.048 0.952 27 H 0.042 0.958 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.394 0.606 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.105 0.895 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.487 -19.555 2.814 21.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.320 5.320 3 C -0.389 4.389 4 H 0.089 0.911 5 C -0.197 4.197 6 N -0.550 5.550 7 Si 0.737 3.263 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.205 1.205 11 C 0.016 3.984 12 C -0.032 4.032 13 N -0.379 5.379 14 C 0.289 3.711 15 O -0.422 6.422 16 C -0.181 4.181 17 C -0.139 4.139 18 C -0.127 4.127 19 C -0.169 4.169 20 C -0.219 4.219 21 C -0.222 4.222 22 H 0.049 0.951 23 H 0.064 0.936 24 H 0.018 0.982 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.227 0.773 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.123 0.877 38 H 0.112 0.888 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 9.118 -18.981 3.618 21.367 hybrid contribution 0.454 0.780 -0.402 0.988 sum 9.572 -18.202 3.216 20.815 Atomic orbital electron populations 1.20847 0.82172 0.95657 0.99647 1.43961 1.02081 1.00410 1.85513 1.19219 0.97144 0.84811 1.37770 0.91146 1.25017 0.97866 0.98552 0.98237 1.70086 1.18773 1.26987 1.39105 0.86236 0.78662 0.83822 0.77591 1.21396 1.21702 1.20520 1.20989 0.96308 0.88856 0.92267 1.22490 0.95737 0.83026 1.01957 1.46234 1.58422 1.25282 1.07971 1.20702 0.79794 0.86587 0.84066 1.90706 1.54741 1.65318 1.31415 1.21694 1.01173 0.95467 0.99764 1.21307 1.01197 0.96415 0.95002 1.21211 1.00410 0.97086 0.93944 1.22370 0.96111 0.99990 0.98434 1.23046 0.94590 1.01985 1.02295 1.22977 1.05109 0.90875 1.03215 0.95122 0.93600 0.98240 0.93617 0.93350 0.94002 0.92332 0.91456 0.77265 0.89228 0.89236 0.91071 0.91152 0.91588 0.91840 0.87681 0.88825 0.89002 0.89016 0.88912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.01 9.02 59.85 0.54 4.55 16 2 N -0.60 -15.08 2.93 -181.11 -0.53 -15.61 16 3 C -0.26 -7.18 9.68 -15.06 -0.15 -7.33 16 4 H 0.07 1.89 7.86 -52.48 -0.41 1.48 16 5 C 0.00 0.06 5.06 -17.43 -0.09 -0.03 16 6 N -0.90 -26.78 10.67 55.49 0.59 -26.19 16 7 Si 0.91 22.07 29.58 -169.99 -5.03 17.04 16 8 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 9 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 C 0.14 2.87 5.82 -4.04 -0.02 2.85 16 12 C 0.09 1.86 6.00 -4.05 -0.02 1.83 16 13 N -0.73 -10.98 5.56 -60.30 -0.33 -11.32 16 14 C 0.50 7.85 7.83 -10.98 -0.09 7.77 16 15 O -0.54 -11.18 15.98 5.56 0.09 -11.09 16 16 C -0.14 -1.45 5.70 -27.88 -0.16 -1.61 16 17 C -0.10 -1.08 4.46 -26.73 -0.12 -1.20 16 18 C -0.09 -0.73 5.49 -26.73 -0.15 -0.88 16 19 C -0.15 -1.27 5.73 -90.62 -0.52 -1.79 16 20 C -0.18 -1.42 10.18 -26.69 -0.27 -1.69 16 21 C -0.18 -1.35 10.26 -26.69 -0.27 -1.62 16 22 H 0.03 0.83 7.40 -51.93 -0.38 0.44 16 23 H 0.05 1.21 7.21 -51.93 -0.37 0.84 16 24 H 0.00 -0.02 7.84 -51.93 -0.41 -0.43 16 25 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 26 H 0.05 0.91 8.03 -51.93 -0.42 0.49 16 27 H 0.04 0.73 7.86 -51.92 -0.41 0.33 16 28 H 0.06 1.29 8.14 -51.92 -0.42 0.87 16 29 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 30 H 0.39 4.46 8.47 -40.82 -0.35 4.12 16 31 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 34 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.48 7.88 -51.92 -0.41 0.07 16 37 H 0.11 0.93 8.08 -51.93 -0.42 0.51 16 38 H 0.09 0.69 8.03 -51.93 -0.42 0.27 16 39 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 339.57 15.07 5.12 5.12 Total: -1.00 -32.68 339.57 -8.77 -41.45 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -7.35 Total: -0.24 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -1.32 Total: 0.84 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: -0.27 Total: -53.11 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.09 Total: -11.09 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.03 Total: 17.04 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.68 -8.77 -41.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663254200.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.898 kcal (2) G-P(sol) polarization free energy of solvation -32.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds