Wall clock time and date at job start Sun Mar 29 2020 23:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36935 * 120.00312 * 2 1 4 4 H 1.08007 * 119.99909 * 200.36391 * 3 2 1 5 5 C 1.38808 * 120.00012 * 20.36457 * 3 2 1 6 6 N 1.31620 * 120.00317 * 14.98660 * 5 3 2 7 7 Si 1.86808 * 119.99897 * 194.98777 * 5 3 2 8 8 H 1.48500 * 109.46955 * 85.00284 * 7 5 3 9 9 H 1.48497 * 109.46847 * 205.00308 * 7 5 3 10 10 H 1.48498 * 109.46967 * 325.00020 * 7 5 3 11 11 C 1.46503 * 119.99839 * 179.97438 * 2 1 3 12 12 C 1.52996 * 109.47625 * 270.00114 * 11 2 1 13 13 N 1.46494 * 109.47298 * 179.97438 * 12 11 2 14 14 C 1.34784 * 119.99601 * 180.02562 * 13 12 11 15 15 O 1.21273 * 120.00276 * 0.02562 * 14 13 12 16 16 C 1.50699 * 119.99473 * 179.97438 * 14 13 12 17 17 C 1.53008 * 109.46897 * 179.97438 * 16 14 13 18 18 C 1.52997 * 109.47132 * 180.02562 * 17 16 14 19 19 C 1.52996 * 109.47405 * 180.02562 * 18 17 16 20 20 C 1.53001 * 117.49974 * 243.75020 * 19 18 17 21 21 C 1.52999 * 117.50419 * 175.08492 * 19 18 17 22 22 H 1.08997 * 109.46797 * 275.09674 * 1 2 3 23 23 H 1.09003 * 109.46451 * 35.09263 * 1 2 3 24 24 H 1.09000 * 109.47395 * 155.09260 * 1 2 3 25 25 H 0.96995 * 120.00447 * 180.02562 * 6 5 3 26 26 H 1.09007 * 109.47021 * 149.99836 * 11 2 1 27 27 H 1.09009 * 109.47067 * 30.00381 * 11 2 1 28 28 H 1.09007 * 109.46841 * 59.99347 * 12 11 2 29 29 H 1.09000 * 109.46969 * 300.00382 * 12 11 2 30 30 H 0.96992 * 120.00386 * 0.02562 * 13 12 11 31 31 H 1.09000 * 109.47737 * 300.00125 * 16 14 13 32 32 H 1.08998 * 109.47509 * 60.00192 * 16 14 13 33 33 H 1.08999 * 109.46849 * 300.00229 * 17 16 14 34 34 H 1.08998 * 109.47032 * 60.00359 * 17 16 14 35 35 H 1.09000 * 109.47516 * 300.00328 * 18 17 16 36 36 H 1.09007 * 109.47507 * 60.00035 * 18 17 16 37 37 H 1.09006 * 115.54921 * 29.41588 * 19 18 17 38 38 H 1.08994 * 117.49839 * 359.97438 * 20 19 18 39 39 H 1.08998 * 117.49505 * 145.01855 * 20 19 18 40 40 H 1.08997 * 117.50269 * 214.98302 * 21 19 18 41 41 H 1.09005 * 117.49732 * 0.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1792 1.2150 -0.3255 5 6 1.5208 2.3504 0.4183 6 7 0.3877 2.2837 1.0846 7 14 2.2827 4.0126 0.0356 8 1 1.8684 4.4460 -1.3230 9 1 1.8226 5.0098 1.0351 10 1 3.7626 3.9032 0.0906 11 6 2.1975 -1.2688 0.0006 12 6 2.4525 -1.7099 1.4432 13 7 3.1844 -2.9789 1.4437 14 6 3.5207 -3.5624 2.6112 15 8 3.2171 -3.0371 3.6612 16 6 4.2731 -4.8681 2.6117 17 6 4.5283 -5.3091 4.0544 18 6 5.2927 -6.6345 4.0549 19 6 5.5473 -7.0759 5.4976 20 6 7.0020 -7.1618 5.9638 21 6 6.2011 -8.4421 5.7135 22 1 -0.3633 0.0913 1.0236 23 1 -0.3632 0.8409 -0.5908 24 1 -0.3634 -0.9321 -0.4328 25 1 -0.0520 3.0974 1.3766 26 1 3.1499 -1.1387 -0.5134 27 1 1.6083 -2.0287 -0.5130 28 1 1.5000 -1.8399 1.9571 29 1 3.0415 -0.9501 1.9567 30 1 3.4269 -3.3993 0.6039 31 1 3.6835 -5.6275 2.0981 32 1 5.2257 -4.7388 2.0979 33 1 5.1181 -4.5496 4.5676 34 1 3.5759 -5.4384 4.5686 35 1 4.7033 -7.3942 3.5416 36 1 6.2451 -6.5048 3.5408 37 1 4.8035 -6.7531 6.2262 38 1 7.7776 -6.9043 5.2427 39 1 7.2151 -6.8960 6.9992 40 1 5.8878 -9.0181 6.5842 41 1 6.4503 -9.0265 4.8277 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663254200.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:35:34 Heat of formation + Delta-G solvation = -32.332272 kcal Electronic energy + Delta-G solvation = -18166.606437 eV Core-core repulsion = 15274.445527 eV Total energy + Delta-G solvation = -2892.160910 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.71771 -38.57328 -37.86005 -35.70152 -34.69601 -33.27263 -30.35136 -28.50159 -27.90968 -25.14413 -23.32569 -23.04434 -22.36881 -21.35237 -21.05343 -18.81505 -17.96151 -16.98112 -16.95386 -16.68685 -16.34142 -15.84705 -15.35957 -15.27392 -14.87907 -14.71950 -14.26037 -14.10736 -13.28973 -13.16865 -12.96126 -12.79932 -12.65570 -12.62332 -12.47421 -12.34359 -12.10147 -12.01004 -11.92991 -11.77622 -11.74062 -11.11905 -10.83428 -10.69385 -10.66200 -10.03767 -8.90178 -7.86396 -5.34052 1.46093 1.47394 1.55828 1.72197 2.25729 2.52689 2.95180 3.28197 3.65906 3.78028 3.89825 4.06384 4.08890 4.20519 4.24511 4.27897 4.38601 4.44900 4.65122 4.77224 4.80951 4.81880 4.82551 4.91011 4.96146 5.06062 5.11050 5.18546 5.27693 5.29106 5.30182 5.37960 5.49204 5.54517 5.62151 5.69952 6.28735 6.67669 7.10736 7.38238 7.82524 8.24185 9.17529 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.041424 B = 0.002981 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.773535 B = 9391.506669 C = 9664.176531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.616 5.616 3 C -0.266 4.266 4 H 0.077 0.923 5 C -0.058 4.058 6 N -0.940 5.940 7 Si 0.972 3.028 8 H -0.281 1.281 9 H -0.298 1.298 10 H -0.269 1.269 11 C 0.147 3.853 12 C 0.114 3.886 13 N -0.712 5.712 14 C 0.496 3.504 15 O -0.602 6.602 16 C -0.126 4.126 17 C -0.099 4.099 18 C -0.079 4.079 19 C -0.168 4.168 20 C -0.188 4.188 21 C -0.175 4.175 22 H -0.002 1.002 23 H 0.021 0.979 24 H 0.038 0.962 25 H 0.248 0.752 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.029 0.971 29 H 0.025 0.975 30 H 0.418 0.582 31 H 0.124 0.876 32 H 0.121 0.879 33 H 0.047 0.953 34 H 0.049 0.951 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.236 -21.696 1.032 24.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.339 5.339 3 C -0.396 4.396 4 H 0.095 0.905 5 C -0.253 4.253 6 N -0.587 5.587 7 Si 0.800 3.200 8 H -0.207 1.207 9 H -0.225 1.225 10 H -0.193 1.193 11 C 0.020 3.980 12 C -0.013 4.013 13 N -0.366 5.366 14 C 0.285 3.715 15 O -0.483 6.483 16 C -0.166 4.166 17 C -0.138 4.138 18 C -0.116 4.116 19 C -0.187 4.187 20 C -0.225 4.225 21 C -0.212 4.212 22 H 0.016 0.984 23 H 0.039 0.961 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.048 0.952 29 H 0.044 0.956 30 H 0.255 0.745 31 H 0.142 0.858 32 H 0.139 0.861 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.110 0.890 38 H 0.118 0.882 39 H 0.109 0.891 40 H 0.114 0.886 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 10.910 -21.184 1.786 23.895 hybrid contribution -0.067 1.353 0.179 1.366 sum 10.843 -19.831 1.966 22.688 Atomic orbital electron populations 1.20605 0.82457 0.96526 0.97552 1.44232 1.02412 1.01727 1.85538 1.19599 0.97426 0.85998 1.36573 0.90511 1.25842 0.98641 1.02094 0.98711 1.70266 1.20351 1.27308 1.40736 0.85213 0.78296 0.79382 0.77139 1.20702 1.22500 1.19334 1.21148 0.97172 0.87508 0.92190 1.21877 0.94110 0.84247 1.01107 1.45962 1.57610 1.23584 1.09394 1.21758 0.78976 0.87850 0.82944 1.90692 1.56948 1.67137 1.33515 1.21727 1.02182 0.92616 1.00061 1.21260 1.00206 0.97304 0.94989 1.21134 1.00784 0.95693 0.93996 1.22395 0.96313 1.01410 0.98545 1.23129 0.94334 1.02519 1.02493 1.23053 1.03895 0.90430 1.03840 0.98361 0.96066 0.94322 0.94277 0.91603 0.90561 0.95232 0.95643 0.74451 0.85826 0.86128 0.93440 0.93169 0.90081 0.90516 0.89011 0.88181 0.89112 0.88581 0.87730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.67 9.02 127.77 1.15 9.82 16 2 N -0.62 -30.87 2.93 -726.92 -2.13 -33.00 16 3 C -0.27 -14.67 9.68 84.03 0.81 -13.85 16 4 H 0.08 4.05 7.86 -2.91 -0.02 4.03 16 5 C -0.06 -3.31 5.06 84.86 0.43 -2.88 16 6 N -0.94 -57.26 10.67 21.65 0.23 -57.03 16 7 Si 0.97 45.78 29.58 68.60 2.03 47.81 16 8 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 9 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 10 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 11 C 0.15 5.55 5.82 86.38 0.50 6.05 16 12 C 0.11 4.51 6.00 86.38 0.52 5.03 16 13 N -0.71 -20.17 5.56 -463.07 -2.57 -22.74 16 14 C 0.50 14.95 7.83 87.66 0.69 15.64 16 15 O -0.60 -25.39 15.98 -3.01 -0.05 -25.44 16 16 C -0.13 -2.22 5.70 29.85 0.17 -2.05 16 17 C -0.10 -2.00 4.46 30.60 0.14 -1.87 16 18 C -0.08 -1.10 5.49 30.59 0.17 -0.93 16 19 C -0.17 -2.64 5.73 -10.79 -0.06 -2.70 16 20 C -0.19 -2.65 10.18 30.62 0.31 -2.34 16 21 C -0.18 -2.20 10.26 30.62 0.31 -1.89 16 22 H 0.00 -0.11 7.40 -2.39 -0.02 -0.13 16 23 H 0.02 1.12 7.21 -2.39 -0.02 1.11 16 24 H 0.04 1.59 7.84 -2.39 -0.02 1.57 16 25 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 26 H 0.07 2.29 8.03 -2.38 -0.02 2.27 16 27 H 0.08 2.40 7.86 -2.38 -0.02 2.38 16 28 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 29 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.42 7.89 8.47 -92.71 -0.79 7.11 16 31 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.05 1.17 8.10 -2.39 -0.02 1.15 16 34 H 0.05 1.20 8.10 -2.39 -0.02 1.18 16 35 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.08 0.89 7.88 -2.38 -0.02 0.88 16 37 H 0.09 1.65 8.08 -2.38 -0.02 1.63 16 38 H 0.10 1.27 8.03 -2.39 -0.02 1.25 16 39 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 Total: -1.00 -74.23 339.57 2.85 -71.38 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: 0.20 Total: 10.98 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: 5.14 Total: 8.03 kcal Atomic # 7 Polarization: -108.30 SS G_CDS: -4.47 Total: -112.77 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.05 Total: -25.44 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -74.23 2.85 -71.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663254200.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.047 kcal (2) G-P(sol) polarization free energy of solvation -74.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds