Wall clock time and date at job start Sun Mar 29 2020 23:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46899 * 109.47195 * 2 1 4 4 C 1.46901 * 111.00236 * 299.24804 * 3 2 1 5 5 C 1.53004 * 109.46960 * 288.51235 * 4 3 2 6 6 C 1.46900 * 110.99718 * 63.20078 * 3 2 1 7 7 C 1.53001 * 109.47131 * 66.04902 * 6 3 2 8 8 C 1.53120 * 109.52275 * 184.99750 * 7 6 3 9 9 C 1.53042 * 109.27686 * 182.37250 * 8 7 6 10 10 N 1.46847 * 109.52186 * 59.18278 * 9 8 7 11 11 C 1.46897 * 110.99938 * 174.16243 * 10 9 8 12 12 C 1.50695 * 109.47367 * 64.75726 * 11 10 9 13 13 H 1.07993 * 119.99926 * 354.71564 * 12 11 10 14 14 C 1.37878 * 119.99763 * 174.99302 * 12 11 10 15 15 N 1.31518 * 120.00021 * 179.72515 * 14 12 11 16 16 Si 1.86800 * 120.00259 * 359.72302 * 14 12 11 17 17 H 1.48508 * 109.47121 * 90.00019 * 16 14 12 18 18 H 1.48501 * 109.47496 * 210.00091 * 16 14 12 19 19 H 1.48500 * 109.46899 * 330.00021 * 16 14 12 20 20 C 1.46853 * 111.19412 * 298.25244 * 10 9 8 21 21 C 1.53036 * 109.52241 * 61.74695 * 20 10 9 22 22 H 1.09008 * 109.46644 * 305.53820 * 1 2 3 23 23 H 1.08992 * 109.47467 * 65.53277 * 1 2 3 24 24 H 1.09001 * 109.47286 * 185.54432 * 1 2 3 25 25 H 1.09005 * 109.46498 * 239.99956 * 2 1 3 26 26 H 1.08997 * 109.47145 * 120.00446 * 2 1 3 27 27 H 1.09001 * 109.46875 * 48.50803 * 4 3 2 28 28 H 1.08992 * 109.47280 * 168.51018 * 4 3 2 29 29 H 1.08999 * 109.46751 * 305.76219 * 5 4 3 30 30 H 1.08998 * 109.47199 * 65.75997 * 5 4 3 31 31 H 1.08999 * 109.46919 * 185.76775 * 5 4 3 32 32 H 1.08993 * 109.47807 * 306.04545 * 6 3 2 33 33 H 1.09002 * 109.46832 * 186.04386 * 6 3 2 34 34 H 1.09002 * 109.52197 * 305.12605 * 7 6 3 35 35 H 1.08999 * 109.50392 * 62.43278 * 8 7 6 36 36 H 1.09000 * 109.50246 * 302.31482 * 8 7 6 37 37 H 1.08990 * 109.46160 * 299.16506 * 9 8 7 38 38 H 1.08998 * 109.45047 * 179.18463 * 9 8 7 39 39 H 1.09006 * 109.46874 * 304.75291 * 11 10 9 40 40 H 1.09002 * 109.47169 * 184.75844 * 11 10 9 41 41 H 0.97003 * 120.00059 * 180.02562 * 15 14 12 42 42 H 1.09001 * 109.45989 * 181.75706 * 20 10 9 43 43 H 1.08988 * 109.46720 * 301.72818 * 20 10 9 44 44 H 1.09000 * 109.50331 * 180.87493 * 21 20 10 45 45 H 1.09002 * 109.50687 * 60.76011 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5635 2.1047 -1.1966 5 6 2.3122 1.5803 -2.4236 6 6 1.6122 2.0874 1.2242 7 6 2.3087 1.4551 2.4308 8 6 1.7910 2.1030 3.7180 9 6 2.5335 1.5086 4.9169 10 7 3.9745 1.7509 4.7710 11 6 4.7053 1.3166 5.9690 12 6 4.5789 -0.1774 6.1205 13 1 3.9434 -0.7363 5.4497 14 6 5.2702 -0.8299 7.1192 15 7 5.1556 -2.1330 7.2549 16 14 6.3694 0.1369 8.2796 17 1 5.5793 0.5787 9.4569 18 1 7.4913 -0.7246 8.7315 19 1 6.9113 1.3252 7.5729 20 6 4.5033 1.0981 3.5665 21 6 3.8196 1.6802 2.3273 22 1 -0.3633 0.5974 0.8363 23 1 -0.3634 0.4256 -0.9353 24 1 -0.3634 -1.0228 0.0993 25 1 1.8932 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 0.4931 1.9471 -1.3293 28 1 1.7619 3.1698 -1.0776 29 1 3.3861 1.6438 -2.2483 30 1 2.0340 0.5418 -2.6025 31 1 2.0499 2.1820 -3.2938 32 1 0.5319 2.0087 1.3458 33 1 1.8941 3.1378 1.1512 34 1 2.1005 0.3853 2.4523 35 1 0.7231 1.9094 3.8189 36 1 1.9644 3.1784 3.6792 37 1 2.3485 0.4355 4.9630 38 1 2.1774 1.9783 5.8337 39 1 4.2870 1.8077 6.8477 40 1 5.7573 1.5840 5.8697 41 1 5.6417 -2.5921 7.9578 42 1 5.5779 1.2696 3.5026 43 1 4.3091 0.0269 3.6189 44 1 4.2011 1.1846 1.4346 45 1 4.0249 2.7490 2.2666 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051908085.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:16:08 Heat of formation + Delta-G solvation = -5.951521 kcal Electronic energy + Delta-G solvation = -20007.193761 eV Core-core repulsion = 17252.009901 eV Total energy + Delta-G solvation = -2755.183860 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.20900 -37.59144 -33.98412 -32.15228 -31.37622 -30.14635 -29.58756 -27.38918 -25.23037 -24.08186 -22.34944 -22.26930 -20.67681 -19.56904 -18.95299 -16.80797 -16.06581 -15.94323 -15.08059 -14.46553 -14.17943 -14.14129 -13.95270 -13.41089 -13.11159 -13.07202 -12.81230 -12.44613 -12.19390 -12.13730 -11.84564 -11.69076 -11.55393 -11.43739 -11.19091 -11.12923 -10.81167 -10.72496 -10.44687 -10.25517 -10.14826 -9.86103 -9.67623 -9.63917 -9.36436 -8.56542 -8.21933 -7.09196 -6.07460 -4.06655 3.30047 3.37465 3.41846 3.91197 4.42623 4.82163 4.87394 5.06375 5.11413 5.17787 5.22789 5.26435 5.27816 5.36973 5.39155 5.46559 5.55191 5.62944 5.81007 5.86027 5.87877 5.92263 5.98030 6.03306 6.06249 6.18618 6.23568 6.24042 6.44415 6.56025 6.58138 6.62746 6.80463 6.85846 7.02564 7.05005 7.12077 7.13971 7.16488 7.62417 8.15707 8.24362 8.49358 8.95567 9.56002 11.05614 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.035534 B = 0.004453 C = 0.004383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.797854 B = 6287.010953 C = 6386.097815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.044 3.956 3 N -0.532 5.532 4 C 0.045 3.955 5 C -0.146 4.146 6 C 0.058 3.942 7 C -0.082 4.082 8 C -0.109 4.109 9 C 0.063 3.937 10 N -0.534 5.534 11 C 0.151 3.849 12 C -0.548 4.548 13 H 0.074 0.926 14 C 0.071 3.929 15 N -0.901 5.901 16 Si 0.878 3.122 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.263 1.263 20 C 0.062 3.938 21 C -0.098 4.098 22 H 0.059 0.941 23 H 0.053 0.947 24 H 0.059 0.941 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.036 0.964 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.034 0.966 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.053 0.947 36 H 0.062 0.938 37 H 0.040 0.960 38 H 0.061 0.939 39 H 0.022 0.978 40 H 0.030 0.970 41 H 0.263 0.737 42 H 0.061 0.939 43 H 0.041 0.959 44 H 0.066 0.934 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.225 7.930 -15.482 19.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.084 4.084 3 N -0.255 5.255 4 C -0.083 4.083 5 C -0.204 4.204 6 C -0.069 4.069 7 C -0.101 4.101 8 C -0.148 4.148 9 C -0.065 4.065 10 N -0.258 5.258 11 C 0.024 3.976 12 C -0.586 4.586 13 H 0.092 0.908 14 C -0.131 4.131 15 N -0.540 5.540 16 Si 0.706 3.294 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.187 1.187 20 C -0.067 4.067 21 C -0.136 4.136 22 H 0.078 0.922 23 H 0.072 0.928 24 H 0.078 0.922 25 H 0.091 0.909 26 H 0.100 0.900 27 H 0.054 0.946 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.052 0.948 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.058 0.942 38 H 0.080 0.920 39 H 0.040 0.960 40 H 0.048 0.952 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.059 0.941 44 H 0.085 0.915 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.566 8.284 -15.446 19.090 hybrid contribution -0.474 -0.629 0.902 1.197 sum -8.039 7.656 -14.543 18.296 Atomic orbital electron populations 1.22417 0.98681 1.02349 1.01728 1.22218 0.92561 0.90547 1.03055 1.62239 1.59331 1.02168 1.01770 1.22113 0.97271 0.98201 0.90705 1.21757 1.01548 1.00720 0.96371 1.22251 0.97219 0.97984 0.89474 1.21195 0.96379 0.99729 0.92795 1.21630 0.98165 1.00368 0.94598 1.21838 0.89261 0.99076 0.96355 1.62378 1.02513 1.57155 1.03763 1.20199 0.94139 0.94854 0.88387 1.21716 1.28744 0.91945 1.16226 0.90805 1.24979 0.96288 0.94702 0.97169 1.69934 1.42798 1.07990 1.33246 0.86802 0.80727 0.80442 0.81476 1.20263 1.21355 1.18739 1.21900 0.98252 0.97141 0.89392 1.21524 0.93689 1.00854 0.97517 0.92214 0.92780 0.92168 0.90877 0.90048 0.94631 0.91266 0.91725 0.92987 0.92765 0.94825 0.91103 0.91521 0.92851 0.91898 0.94212 0.92018 0.96003 0.95201 0.92761 0.92059 0.94052 0.91499 0.92461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.91 9.25 37.16 0.34 -1.57 16 2 C 0.04 0.49 5.71 -3.82 -0.02 0.47 16 3 N -0.53 -6.12 4.19 -234.63 -0.98 -7.10 16 4 C 0.04 0.44 5.53 -3.82 -0.02 0.41 16 5 C -0.15 -1.28 9.83 37.16 0.37 -0.91 16 6 C 0.06 0.70 4.16 -3.82 -0.02 0.69 16 7 C -0.08 -1.20 2.17 -90.50 -0.20 -1.39 16 8 C -0.11 -1.67 5.38 -26.65 -0.14 -1.81 16 9 C 0.06 1.23 5.11 -3.83 -0.02 1.21 16 10 N -0.53 -11.39 4.86 -236.12 -1.15 -12.54 16 11 C 0.15 3.71 4.22 -4.98 -0.02 3.69 16 12 C -0.55 -15.43 8.27 -34.44 -0.28 -15.72 16 13 H 0.07 2.26 6.11 -52.49 -0.32 1.94 16 14 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 15 N -0.90 -27.69 13.96 55.43 0.77 -26.92 16 16 Si 0.88 21.67 27.57 -169.99 -4.69 16.99 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.26 -6.26 6.40 56.52 0.36 -5.90 16 20 C 0.06 1.23 5.03 -3.83 -0.02 1.21 16 21 C -0.10 -1.57 5.24 -26.65 -0.14 -1.71 16 22 H 0.06 0.63 6.10 -51.92 -0.32 0.31 16 23 H 0.05 0.49 6.48 -51.93 -0.34 0.16 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.07 0.76 6.78 -51.93 -0.35 0.41 16 26 H 0.08 1.03 6.23 -51.93 -0.32 0.70 16 27 H 0.04 0.33 5.91 -51.93 -0.31 0.02 16 28 H 0.07 0.65 7.82 -51.93 -0.41 0.25 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.45 6.98 -51.93 -0.36 0.09 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.03 0.39 6.00 -51.93 -0.31 0.08 16 33 H 0.07 0.85 7.87 -51.93 -0.41 0.44 16 34 H 0.07 1.06 6.27 -51.93 -0.33 0.73 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.04 0.87 6.85 -51.93 -0.36 0.52 16 38 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 39 H 0.02 0.54 7.77 -51.93 -0.40 0.13 16 40 H 0.03 0.75 6.84 -51.93 -0.35 0.39 16 41 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 42 H 0.06 1.24 8.12 -51.93 -0.42 0.82 16 43 H 0.04 0.93 6.74 -51.94 -0.35 0.58 16 44 H 0.07 1.05 7.84 -51.93 -0.41 0.64 16 45 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 328.51 15.07 4.95 4.95 Total: -1.00 -29.55 328.51 -9.56 -39.11 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -8.19 Total: -1.02 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: -0.27 Total: -13.47 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: -1.36 Total: -46.56 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.69 Total: 16.99 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.55 -9.56 -39.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051908085.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.156 kcal (2) G-P(sol) polarization free energy of solvation -29.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds