Wall clock time and date at job start Sun Mar 29 2020 23:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.50371 * 2 1 4 4 C 1.53032 * 109.50503 * 239.91771 * 2 1 3 5 5 N 1.46850 * 109.52238 * 180.88357 * 4 2 1 6 6 C 1.46909 * 110.99744 * 185.83959 * 5 4 2 7 7 C 1.46842 * 111.20491 * 61.73947 * 5 4 2 8 8 H 1.09000 * 109.46622 * 178.25322 * 7 5 4 9 9 C 1.53000 * 109.45984 * 58.27105 * 7 5 4 10 10 C 1.53037 * 109.52055 * 298.25883 * 7 5 4 11 11 C 1.53119 * 109.27925 * 59.17890 * 10 7 5 12 12 H 1.08997 * 109.52811 * 62.24598 * 11 10 7 13 13 N 1.46901 * 109.52547 * 182.43923 * 11 10 7 14 14 C 1.46901 * 111.00157 * 274.68198 * 13 11 10 15 15 C 1.52999 * 109.47225 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.47164 * 179.97438 * 15 14 13 17 17 C 1.50693 * 109.47176 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99890 * 0.02562 * 17 16 15 19 19 C 1.37882 * 120.00011 * 180.02562 * 17 16 15 20 20 N 1.31504 * 120.00071 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99786 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47237 * 90.00155 * 21 19 17 23 23 H 1.48496 * 109.47079 * 209.99968 * 21 19 17 24 24 H 1.48496 * 109.47362 * 330.00050 * 21 19 17 25 25 H 1.09002 * 109.47153 * 180.08317 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.08508 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.08489 * 1 2 3 28 28 H 1.09006 * 109.45925 * 300.89194 * 4 2 1 29 29 H 1.08998 * 109.46727 * 60.86164 * 4 2 1 30 30 H 1.08998 * 109.47317 * 63.95051 * 6 5 4 31 31 H 1.08998 * 109.46933 * 183.94997 * 6 5 4 32 32 H 1.08997 * 109.46991 * 303.94743 * 6 5 4 33 33 H 1.08997 * 109.47494 * 60.00530 * 9 7 5 34 34 H 1.09009 * 109.46944 * 180.02562 * 9 7 5 35 35 H 1.09002 * 109.47593 * 300.00272 * 9 7 5 36 36 H 1.09000 * 109.50560 * 179.11675 * 10 7 5 37 37 H 1.08993 * 109.50529 * 299.19422 * 10 7 5 38 38 H 1.00909 * 110.99871 * 38.63582 * 13 11 10 39 39 H 1.08998 * 109.46752 * 299.99658 * 14 13 11 40 40 H 1.09003 * 109.46892 * 59.99849 * 14 13 11 41 41 H 1.09003 * 109.47151 * 300.00432 * 15 14 13 42 42 H 1.09003 * 109.46977 * 60.00307 * 15 14 13 43 43 H 1.08992 * 109.47388 * 300.00761 * 16 15 14 44 44 H 1.09003 * 109.46709 * 60.00405 * 16 15 14 45 45 H 0.97004 * 120.00439 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0409 -0.7230 -1.2482 5 7 3.5093 -0.7418 -1.2379 6 6 4.0373 -1.3052 -2.4877 7 6 4.0230 -1.4729 -0.0727 8 1 5.1121 -1.4960 -0.1096 9 6 3.4819 -2.9039 -0.0897 10 6 3.5712 -0.7722 1.2106 11 6 2.0412 -0.7241 1.2486 12 1 1.6452 -1.7394 1.2685 13 7 1.6024 -0.0010 2.4497 14 6 1.5325 -0.9001 3.6093 15 6 1.0736 -0.1126 4.8382 16 6 1.0001 -1.0491 6.0458 17 6 0.5488 -0.2734 7.2564 18 1 0.3352 0.7820 7.1727 19 6 0.4084 -0.9110 8.4708 20 7 0.6689 -2.1959 8.5729 21 14 -0.1517 0.0505 9.9712 22 1 -1.6335 0.0104 10.0600 23 1 0.4339 -0.5550 11.1941 24 1 0.2990 1.4604 9.8524 25 1 -0.3633 -1.0277 0.0015 26 1 -0.3633 0.5125 -0.8908 27 1 -0.3634 0.5152 0.8892 28 1 1.6648 -1.7461 -1.2548 29 1 1.6905 -0.2017 -2.1390 30 1 3.7602 -0.6611 -3.3223 31 1 5.1234 -1.3723 -2.4256 32 1 3.6201 -2.3002 -2.6425 33 1 3.8044 -3.4035 -1.0032 34 1 3.8628 -3.4467 0.7755 35 1 2.3927 -2.8811 -0.0532 36 1 3.9395 -1.3239 2.0755 37 1 3.9684 0.2426 1.2303 38 1 2.2050 0.7861 2.6382 39 1 0.8227 -1.7017 3.4052 40 1 2.5177 -1.3264 3.7984 41 1 1.7836 0.6889 5.0421 42 1 0.0885 0.3140 4.6493 43 1 0.2900 -1.8503 5.8417 44 1 1.9851 -1.4761 6.2349 45 1 0.5699 -2.6446 9.4272 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167257280.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:50 Heat of formation + Delta-G solvation = -21.544948 kcal Electronic energy + Delta-G solvation = -19549.695371 eV Core-core repulsion = 16793.835330 eV Total energy + Delta-G solvation = -2755.860042 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.10235 -36.46028 -34.17922 -33.08827 -32.19617 -30.43732 -28.01851 -26.99458 -25.92676 -24.77947 -22.99179 -21.86455 -21.20477 -20.10489 -18.79915 -16.36839 -16.24083 -15.53279 -15.04783 -14.84856 -14.51973 -14.40264 -14.26041 -13.69216 -13.46581 -13.00759 -12.61352 -12.46968 -12.31159 -12.20022 -11.99882 -11.78041 -11.71736 -11.49652 -11.29276 -11.07573 -10.87373 -10.69352 -10.58174 -10.53118 -10.42673 -10.16189 -9.65190 -9.27979 -9.01319 -8.45759 -8.31627 -8.02004 -5.96858 -3.98708 3.34313 3.40207 3.44022 3.74586 4.35923 4.50343 4.60977 4.69510 4.89002 5.04213 5.06334 5.12722 5.26211 5.28417 5.38970 5.40874 5.47810 5.52920 5.59994 5.62249 5.68682 5.75212 5.77090 5.88070 5.91649 5.95396 6.05597 6.11469 6.18465 6.37464 6.39589 6.46297 6.77343 6.84141 6.92031 6.95083 7.18253 7.43583 7.70906 7.73059 7.87698 8.03945 8.47546 9.08653 9.65131 11.14628 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.041857 B = 0.003529 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.787738 B = 7933.113956 C = 8268.669830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.074 4.074 3 H 0.076 0.924 4 C 0.056 3.944 5 N -0.537 5.537 6 C 0.024 3.976 7 C 0.085 3.915 8 H 0.079 0.921 9 C -0.190 4.190 10 C -0.142 4.142 11 C 0.090 3.910 12 H 0.074 0.926 13 N -0.683 5.683 14 C 0.061 3.939 15 C -0.107 4.107 16 C 0.022 3.978 17 C -0.518 4.518 18 H 0.055 0.945 19 C 0.055 3.945 20 N -0.897 5.897 21 Si 0.892 3.108 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 H 0.045 0.955 26 H 0.044 0.956 27 H 0.074 0.926 28 H 0.037 0.963 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.026 0.974 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.337 0.663 39 H 0.064 0.936 40 H 0.023 0.977 41 H 0.044 0.956 42 H 0.055 0.945 43 H 0.015 0.985 44 H 0.013 0.987 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.630 1.064 -21.730 22.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.094 4.094 3 H 0.094 0.906 4 C -0.072 4.072 5 N -0.260 5.260 6 C -0.125 4.125 7 C -0.024 4.024 8 H 0.097 0.903 9 C -0.249 4.249 10 C -0.181 4.181 11 C -0.020 4.020 12 H 0.092 0.908 13 N -0.312 5.312 14 C -0.068 4.068 15 C -0.145 4.145 16 C -0.015 4.015 17 C -0.556 4.556 18 H 0.073 0.927 19 C -0.146 4.146 20 N -0.537 5.537 21 Si 0.720 3.280 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.093 0.907 28 H 0.055 0.945 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.045 0.955 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.155 0.845 39 H 0.082 0.918 40 H 0.041 0.959 41 H 0.063 0.937 42 H 0.074 0.926 43 H 0.033 0.967 44 H 0.031 0.969 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.118 1.349 -21.704 22.340 hybrid contribution 0.463 -0.668 1.024 1.307 sum 5.581 0.681 -20.679 21.430 Atomic orbital electron populations 1.21675 0.94380 1.01440 1.02003 1.21094 0.95868 0.99953 0.92471 0.90582 1.22225 0.86931 0.99257 0.98789 1.62147 1.08473 1.53304 1.02120 1.22355 1.00233 0.97779 0.92105 1.21623 0.99131 0.91009 0.90627 0.90286 1.22523 1.02366 0.97919 1.02082 1.22354 0.97889 1.01428 0.96452 1.21673 0.91899 0.97601 0.90842 0.90780 1.60637 1.56057 1.10943 1.03561 1.22124 0.98974 0.95503 0.90186 1.21616 1.00197 0.98752 0.93902 1.19057 0.96948 0.94441 0.91090 1.21268 1.44839 0.95618 0.93899 0.92678 1.25032 0.95626 0.94899 0.99000 1.69963 1.49466 1.09046 1.25195 0.86598 0.78840 0.80171 0.82425 1.20670 1.21284 1.19869 0.93542 0.93658 0.90668 0.94486 0.90962 0.91540 0.91616 0.95547 0.92779 0.91841 0.91770 0.91409 0.91017 0.84482 0.91769 0.95916 0.93703 0.92623 0.96670 0.96884 0.93071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.06 37.16 0.34 -1.19 16 2 C -0.07 -0.83 2.58 -90.54 -0.23 -1.06 16 3 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 4 C 0.06 0.56 4.45 -3.83 -0.02 0.54 16 5 N -0.54 -5.38 4.86 -234.92 -1.14 -6.53 16 6 C 0.02 0.19 9.14 60.07 0.55 0.74 16 7 C 0.09 0.87 2.93 -67.73 -0.20 0.67 16 8 H 0.08 0.77 8.04 -51.93 -0.42 0.36 16 9 C -0.19 -1.86 8.18 37.16 0.30 -1.56 16 10 C -0.14 -1.63 4.87 -26.65 -0.13 -1.76 16 11 C 0.09 1.12 1.64 -67.59 -0.11 1.00 16 12 H 0.07 0.99 6.22 -51.93 -0.32 0.67 16 13 N -0.68 -9.86 5.61 -106.59 -0.60 -10.46 16 14 C 0.06 1.05 5.49 -3.82 -0.02 1.03 16 15 C -0.11 -2.24 5.41 -26.73 -0.14 -2.38 16 16 C 0.02 0.58 4.97 -27.89 -0.14 0.45 16 17 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 18 H 0.05 1.55 7.74 -52.48 -0.41 1.14 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.90 -27.37 13.29 55.43 0.74 -26.63 16 21 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.96 7.69 -51.93 -0.40 0.56 16 28 H 0.04 0.38 6.19 -51.93 -0.32 0.06 16 29 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.49 8.02 -51.93 -0.42 0.07 16 32 H 0.03 0.21 6.87 -51.93 -0.36 -0.15 16 33 H 0.05 0.48 6.73 -51.93 -0.35 0.13 16 34 H 0.06 0.63 8.14 -51.92 -0.42 0.20 16 35 H 0.06 0.67 4.80 -51.93 -0.25 0.43 16 36 H 0.07 0.83 7.54 -51.93 -0.39 0.44 16 37 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 38 H 0.34 4.71 8.45 -39.29 -0.33 4.37 16 39 H 0.06 1.15 8.06 -51.93 -0.42 0.74 16 40 H 0.02 0.40 7.51 -51.93 -0.39 0.01 16 41 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 339.56 15.07 5.12 5.12 Total: -1.00 -29.68 339.56 -9.68 -39.35 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -8.55 Total: -0.54 kcal Atomic # 6 Polarization: -17.05 SS G_CDS: -0.22 Total: -17.27 kcal Atomic # 7 Polarization: -42.61 SS G_CDS: -1.00 Total: -43.62 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.68 -9.68 -39.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167257280.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.806 kcal (2) G-P(sol) polarization free energy of solvation -29.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds