Wall clock time and date at job start Sun Mar 29 2020 23:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.50371 * 2 1 4 4 C 1.53032 * 109.50503 * 239.91771 * 2 1 3 5 5 N 1.46850 * 109.52238 * 180.88357 * 4 2 1 6 6 C 1.46909 * 110.99744 * 185.83959 * 5 4 2 7 7 C 1.46842 * 111.20491 * 61.73947 * 5 4 2 8 8 H 1.09000 * 109.46622 * 178.25322 * 7 5 4 9 9 C 1.53000 * 109.45984 * 58.27105 * 7 5 4 10 10 C 1.53037 * 109.52055 * 298.25883 * 7 5 4 11 11 C 1.53119 * 109.27925 * 59.17890 * 10 7 5 12 12 H 1.08997 * 109.52811 * 62.24598 * 11 10 7 13 13 N 1.46901 * 109.52547 * 182.43923 * 11 10 7 14 14 C 1.46901 * 111.00157 * 274.68198 * 13 11 10 15 15 C 1.52999 * 109.47225 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.47164 * 179.97438 * 15 14 13 17 17 C 1.50693 * 109.47176 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99890 * 0.02562 * 17 16 15 19 19 C 1.37882 * 120.00011 * 180.02562 * 17 16 15 20 20 N 1.31504 * 120.00071 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99786 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47237 * 90.00155 * 21 19 17 23 23 H 1.48496 * 109.47079 * 209.99968 * 21 19 17 24 24 H 1.48496 * 109.47362 * 330.00050 * 21 19 17 25 25 H 1.09002 * 109.47153 * 180.08317 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.08508 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.08489 * 1 2 3 28 28 H 1.09006 * 109.45925 * 300.89194 * 4 2 1 29 29 H 1.08998 * 109.46727 * 60.86164 * 4 2 1 30 30 H 1.08998 * 109.47317 * 63.95051 * 6 5 4 31 31 H 1.08998 * 109.46933 * 183.94997 * 6 5 4 32 32 H 1.08997 * 109.46991 * 303.94743 * 6 5 4 33 33 H 1.08997 * 109.47494 * 60.00530 * 9 7 5 34 34 H 1.09009 * 109.46944 * 180.02562 * 9 7 5 35 35 H 1.09002 * 109.47593 * 300.00272 * 9 7 5 36 36 H 1.09000 * 109.50560 * 179.11675 * 10 7 5 37 37 H 1.08993 * 109.50529 * 299.19422 * 10 7 5 38 38 H 1.00909 * 110.99871 * 38.63582 * 13 11 10 39 39 H 1.08998 * 109.46752 * 299.99658 * 14 13 11 40 40 H 1.09003 * 109.46892 * 59.99849 * 14 13 11 41 41 H 1.09003 * 109.47151 * 300.00432 * 15 14 13 42 42 H 1.09003 * 109.46977 * 60.00307 * 15 14 13 43 43 H 1.08992 * 109.47388 * 300.00761 * 16 15 14 44 44 H 1.09003 * 109.46709 * 60.00405 * 16 15 14 45 45 H 0.97004 * 120.00439 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0409 -0.7230 -1.2482 5 7 3.5093 -0.7418 -1.2379 6 6 4.0373 -1.3052 -2.4877 7 6 4.0230 -1.4729 -0.0727 8 1 5.1121 -1.4960 -0.1096 9 6 3.4819 -2.9039 -0.0897 10 6 3.5712 -0.7722 1.2106 11 6 2.0412 -0.7241 1.2486 12 1 1.6452 -1.7394 1.2685 13 7 1.6024 -0.0010 2.4497 14 6 1.5325 -0.9001 3.6093 15 6 1.0736 -0.1126 4.8382 16 6 1.0001 -1.0491 6.0458 17 6 0.5488 -0.2734 7.2564 18 1 0.3352 0.7820 7.1727 19 6 0.4084 -0.9110 8.4708 20 7 0.6689 -2.1959 8.5729 21 14 -0.1517 0.0505 9.9712 22 1 -1.6335 0.0104 10.0600 23 1 0.4339 -0.5550 11.1941 24 1 0.2990 1.4604 9.8524 25 1 -0.3633 -1.0277 0.0015 26 1 -0.3633 0.5125 -0.8908 27 1 -0.3634 0.5152 0.8892 28 1 1.6648 -1.7461 -1.2548 29 1 1.6905 -0.2017 -2.1390 30 1 3.7602 -0.6611 -3.3223 31 1 5.1234 -1.3723 -2.4256 32 1 3.6201 -2.3002 -2.6425 33 1 3.8044 -3.4035 -1.0032 34 1 3.8628 -3.4467 0.7755 35 1 2.3927 -2.8811 -0.0532 36 1 3.9395 -1.3239 2.0755 37 1 3.9684 0.2426 1.2303 38 1 2.2050 0.7861 2.6382 39 1 0.8227 -1.7017 3.4052 40 1 2.5177 -1.3264 3.7984 41 1 1.7836 0.6889 5.0421 42 1 0.0885 0.3140 4.6493 43 1 0.2900 -1.8503 5.8417 44 1 1.9851 -1.4761 6.2349 45 1 0.5699 -2.6446 9.4272 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167257280.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:49 Heat of formation + Delta-G solvation = -40.509923 kcal Electronic energy + Delta-G solvation = -19550.517754 eV Core-core repulsion = 16793.835330 eV Total energy + Delta-G solvation = -2756.682425 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.98820 -37.68147 -35.80407 -34.45561 -33.50365 -31.92002 -29.10018 -28.09741 -27.24875 -25.81667 -24.43978 -23.12802 -22.29836 -21.67568 -19.73907 -18.46763 -17.25884 -16.62154 -16.39373 -16.12510 -15.98380 -15.45461 -15.15989 -15.01144 -14.47881 -14.25404 -14.13398 -13.53020 -13.42752 -13.34144 -13.22879 -13.07362 -12.79305 -12.73730 -12.53985 -12.46272 -12.31265 -12.13937 -11.97784 -11.69892 -11.57006 -11.43919 -11.34196 -11.23351 -10.87830 -10.55562 -9.26920 -9.17022 -8.20290 -6.31350 1.39922 1.41536 1.52766 2.41026 2.98968 3.12746 3.22254 3.70027 3.85101 4.03235 4.10934 4.22794 4.26386 4.37627 4.40733 4.45757 4.51257 4.59272 4.63304 4.71974 4.74777 4.78052 4.81618 4.89319 4.94510 5.01648 5.03674 5.08147 5.10871 5.13910 5.23688 5.27312 5.28167 5.47006 5.53279 5.54577 5.75627 5.85954 6.13251 6.16764 6.18421 6.28411 6.53809 6.85675 7.37892 8.91693 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.041857 B = 0.003529 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.787738 B = 7933.113956 C = 8268.669830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.068 4.068 3 H 0.071 0.929 4 C 0.060 3.940 5 N -0.546 5.546 6 C 0.023 3.977 7 C 0.087 3.913 8 H 0.086 0.914 9 C -0.186 4.186 10 C -0.137 4.137 11 C 0.093 3.907 12 H 0.064 0.936 13 N -0.681 5.681 14 C 0.077 3.923 15 C -0.091 4.091 16 C 0.026 3.974 17 C -0.543 4.543 18 H 0.059 0.941 19 C -0.002 4.002 20 N -0.934 5.934 21 Si 0.966 3.034 22 H -0.272 1.272 23 H -0.281 1.281 24 H -0.263 1.263 25 H 0.043 0.957 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.036 0.964 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.029 0.971 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.342 0.658 39 H 0.056 0.944 40 H 0.020 0.980 41 H 0.050 0.950 42 H 0.052 0.948 43 H -0.010 1.010 44 H -0.010 1.010 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.798 2.078 -22.740 23.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.088 4.088 3 H 0.090 0.910 4 C -0.068 4.068 5 N -0.269 5.269 6 C -0.125 4.125 7 C -0.022 4.022 8 H 0.104 0.896 9 C -0.245 4.245 10 C -0.177 4.177 11 C -0.017 4.017 12 H 0.082 0.918 13 N -0.310 5.310 14 C -0.053 4.053 15 C -0.129 4.129 16 C -0.012 4.012 17 C -0.581 4.581 18 H 0.078 0.922 19 C -0.200 4.200 20 N -0.575 5.575 21 Si 0.790 3.210 22 H -0.197 1.197 23 H -0.207 1.207 24 H -0.187 1.187 25 H 0.062 0.938 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.054 0.946 29 H 0.103 0.897 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.048 0.952 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.161 0.839 39 H 0.074 0.926 40 H 0.039 0.961 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.008 0.992 44 H 0.008 0.992 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.291 2.374 -22.740 23.468 hybrid contribution 0.424 -1.007 1.298 1.697 sum 5.715 1.366 -21.442 22.233 Atomic orbital electron populations 1.21624 0.94356 1.01220 1.01914 1.21031 0.95823 0.99599 0.92333 0.91022 1.22177 0.87093 0.99131 0.98390 1.62152 1.08389 1.53635 1.02747 1.22410 1.00643 0.98070 0.91346 1.21584 0.99523 0.90951 0.90115 0.89571 1.22476 1.01707 0.97796 1.02481 1.22277 0.96957 1.01415 0.97037 1.21691 0.92652 0.97016 0.90360 0.91766 1.60572 1.56724 1.10671 1.03048 1.21789 0.98400 0.95106 0.89958 1.21366 1.00330 0.97938 0.93313 1.18960 0.94678 0.94540 0.92994 1.21707 1.45154 0.96114 0.95130 0.92243 1.26004 0.95488 0.95937 1.02530 1.70095 1.50291 1.10812 1.26266 0.85433 0.78593 0.78940 0.78006 1.19746 1.20663 1.18693 0.93803 0.91954 0.92537 0.94579 0.89714 0.90591 0.90919 0.95204 0.91622 0.92292 0.92639 0.92441 0.91110 0.83916 0.92569 0.96145 0.93159 0.92943 0.99194 0.99186 0.92769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.82 9.06 71.98 0.65 -2.16 16 2 C -0.07 -1.43 2.58 -10.74 -0.03 -1.46 16 3 H 0.07 1.59 8.14 -2.38 -0.02 1.58 16 4 C 0.06 1.08 4.45 86.32 0.38 1.47 16 5 N -0.55 -9.82 4.86 -897.17 -4.36 -14.17 16 6 C 0.02 0.32 9.14 127.69 1.17 1.48 16 7 C 0.09 1.65 2.93 44.94 0.13 1.79 16 8 H 0.09 1.53 8.04 -2.39 -0.02 1.51 16 9 C -0.19 -3.42 8.18 71.98 0.59 -2.83 16 10 C -0.14 -3.04 4.87 30.65 0.15 -2.89 16 11 C 0.09 2.24 1.64 45.00 0.07 2.31 16 12 H 0.06 1.70 6.22 -2.39 -0.01 1.69 16 13 N -0.68 -19.41 5.61 -491.15 -2.76 -22.17 16 14 C 0.08 2.69 5.49 86.30 0.47 3.17 16 15 C -0.09 -3.88 5.41 30.59 0.17 -3.71 16 16 C 0.03 1.41 4.97 29.84 0.15 1.55 16 17 C -0.54 -31.73 9.11 25.60 0.23 -31.49 16 18 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16 19 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 20 N -0.93 -57.87 13.29 21.45 0.28 -57.58 16 21 Si 0.97 44.99 29.54 68.60 2.03 47.01 16 22 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 23 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 24 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 25 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.06 1.41 7.69 -2.38 -0.02 1.39 16 28 H 0.04 0.67 6.19 -2.38 -0.01 0.65 16 29 H 0.08 1.34 8.12 -2.39 -0.02 1.32 16 30 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.07 0.90 8.02 -2.39 -0.02 0.88 16 32 H 0.03 0.39 6.87 -2.39 -0.02 0.38 16 33 H 0.06 1.05 6.73 -2.39 -0.02 1.03 16 34 H 0.06 1.12 8.14 -2.38 -0.02 1.11 16 35 H 0.05 1.12 4.80 -2.39 -0.01 1.10 16 36 H 0.06 1.39 7.54 -2.39 -0.02 1.37 16 37 H 0.07 1.58 8.10 -2.39 -0.02 1.56 16 38 H 0.34 9.29 8.45 -89.69 -0.76 8.53 16 39 H 0.06 2.06 8.06 -2.39 -0.02 2.04 16 40 H 0.02 0.72 7.51 -2.39 -0.02 0.71 16 41 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.05 2.24 8.14 -2.39 -0.02 2.23 16 43 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 44 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 45 H 0.26 15.28 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -63.29 339.56 -0.03 -63.32 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 0.17 Total: 16.04 kcal Atomic # 6 Polarization: -37.05 SS G_CDS: 4.60 Total: -32.45 kcal Atomic # 7 Polarization: -87.09 SS G_CDS: -6.83 Total: -93.92 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -63.29 -0.03 -63.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167257280.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.809 kcal (2) G-P(sol) polarization free energy of solvation -63.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds