Wall clock time and date at job start Sun Mar 29 2020 23:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46904 * 109.47092 * 2 1 4 4 C 1.46900 * 110.99848 * 61.08317 * 3 2 1 5 5 C 1.50693 * 109.47370 * 66.04636 * 4 3 2 6 6 H 1.08000 * 119.99843 * 0.02562 * 5 4 3 7 7 C 1.37882 * 120.00144 * 179.97438 * 5 4 3 8 8 N 1.31508 * 119.99606 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 119.99865 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47180 * 90.00230 * 9 7 5 11 11 H 1.48506 * 109.47241 * 209.99992 * 9 7 5 12 12 H 1.48499 * 109.47369 * 330.00085 * 9 7 5 13 13 C 1.46902 * 110.99688 * 297.13054 * 3 2 1 14 14 C 1.53003 * 109.46987 * 289.65640 * 13 3 2 15 15 C 1.53000 * 109.46775 * 179.71245 * 14 13 3 16 16 H 1.08993 * 109.46366 * 56.20379 * 15 14 13 17 17 C 1.53032 * 109.46527 * 296.21501 * 15 14 13 18 18 C 1.53114 * 109.28005 * 180.80618 * 17 15 14 19 19 C 1.53120 * 109.16205 * 57.66062 * 18 17 15 20 20 C 1.53042 * 109.27214 * 302.34529 * 19 18 17 21 21 N 1.46846 * 109.45815 * 176.17648 * 15 14 13 22 22 C 1.46894 * 111.00255 * 305.85602 * 21 15 14 23 23 H 1.09003 * 109.46927 * 181.59861 * 1 2 3 24 24 H 1.08996 * 109.47173 * 301.59709 * 1 2 3 25 25 H 1.08998 * 109.47338 * 61.60417 * 1 2 3 26 26 H 1.08997 * 109.47136 * 119.99771 * 2 1 3 27 27 H 1.08997 * 109.47327 * 240.00154 * 2 1 3 28 28 H 1.09003 * 109.46813 * 186.05291 * 4 3 2 29 29 H 1.09003 * 109.47054 * 306.04688 * 4 3 2 30 30 H 0.97006 * 120.00108 * 179.97438 * 8 7 5 31 31 H 1.08997 * 109.47078 * 49.65762 * 13 3 2 32 32 H 1.09002 * 109.47056 * 169.66061 * 13 3 2 33 33 H 1.09000 * 109.47116 * 299.71496 * 14 13 3 34 34 H 1.09000 * 109.46806 * 59.71608 * 14 13 3 35 35 H 1.08993 * 109.50703 * 300.75194 * 17 15 14 36 36 H 1.09008 * 109.50208 * 60.82818 * 17 15 14 37 37 H 1.09009 * 109.52359 * 177.56509 * 18 17 15 38 38 H 1.09004 * 109.52668 * 297.69078 * 18 17 15 39 39 H 1.08995 * 109.50091 * 62.27996 * 19 18 17 40 40 H 1.08992 * 109.50710 * 182.36767 * 19 18 17 41 41 H 1.09008 * 109.45634 * 179.19474 * 20 19 18 42 42 H 1.08997 * 109.46419 * 299.15882 * 20 19 18 43 43 H 1.09005 * 109.47433 * 66.62161 * 22 21 15 44 44 H 1.09006 * 109.47322 * 186.62582 * 22 21 15 45 45 H 1.09002 * 109.47287 * 306.62393 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5699 2.1024 1.2005 5 6 2.2139 1.4945 2.4197 6 1 2.8900 0.6590 2.3135 7 6 1.9407 2.0055 3.6709 8 7 1.1178 3.0231 3.8001 9 14 2.7395 1.2524 5.1821 10 1 4.0274 1.9393 5.4555 11 1 1.8364 1.4107 6.3503 12 1 2.9899 -0.1916 4.9421 13 6 1.6055 2.0898 -1.2206 14 6 2.3758 1.5307 -2.4185 15 6 1.9391 2.2599 -3.6908 16 1 2.0858 3.3323 -3.5632 17 6 0.4596 1.9757 -3.9591 18 6 0.0323 2.6908 -5.2438 19 6 0.9168 2.2173 -6.4006 20 6 2.3832 2.4944 -6.0614 21 7 2.7429 1.7878 -4.8255 22 6 4.1787 1.9178 -4.5438 23 1 -0.3633 -1.0273 0.0287 24 1 -0.3633 0.5384 0.8753 25 1 -0.3634 0.4887 -0.9040 26 1 1.8933 -0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8542 3.1519 1.1244 29 1 0.4860 2.0249 1.2853 30 1 0.9252 3.3824 4.6804 31 1 0.5363 1.9471 -1.3774 32 1 1.8186 3.1536 -1.1159 33 1 3.4447 1.6780 -2.2640 34 1 2.1666 0.4658 -2.5201 35 1 0.3101 0.9021 -4.0733 36 1 -0.1383 2.3395 -3.1234 37 1 -1.0095 2.4560 -5.4622 38 1 0.1440 3.7675 -5.1159 39 1 0.7745 1.1475 -6.5531 40 1 0.6453 2.7538 -7.3096 41 1 3.0167 2.1454 -6.8770 42 1 2.5276 3.5658 -5.9226 43 1 4.4547 1.2350 -3.7401 44 1 4.7485 1.6730 -5.4403 45 1 4.3986 2.9418 -4.2420 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230202589.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:19:13 Heat of formation + Delta-G solvation = -26.385544 kcal Electronic energy + Delta-G solvation = -19920.166184 eV Core-core repulsion = 17164.096238 eV Total energy + Delta-G solvation = -2756.069946 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.45784 -38.82052 -34.96265 -34.49760 -33.79067 -31.07157 -29.97613 -27.94235 -27.20318 -25.26681 -24.66866 -23.60537 -21.97513 -20.65463 -20.49266 -18.35367 -17.08589 -16.92730 -16.41741 -16.26825 -15.81364 -15.53244 -15.13444 -15.02310 -14.60444 -14.46709 -14.00431 -13.67614 -13.57712 -13.17551 -13.08384 -13.03299 -12.88921 -12.59103 -12.55385 -12.46980 -12.30332 -12.14871 -11.85558 -11.78306 -11.59691 -11.38444 -11.26974 -11.08767 -10.93608 -10.57884 -9.25410 -8.86267 -8.18212 -6.27429 1.40982 1.42327 1.53362 2.41226 2.90954 3.14231 3.41945 3.83315 3.92243 4.00040 4.08490 4.25060 4.31760 4.35573 4.45900 4.49755 4.51102 4.59944 4.63386 4.65333 4.70955 4.75936 4.80799 4.90353 4.96875 5.02170 5.06278 5.07818 5.10723 5.18303 5.23679 5.26246 5.29124 5.36639 5.41473 5.49436 5.54247 5.70089 6.09555 6.15758 6.22303 6.42438 6.72197 6.89470 7.41894 8.92675 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.035909 B = 0.004274 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.569138 B = 6549.595223 C = 6770.149776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.061 3.939 3 N -0.545 5.545 4 C 0.205 3.795 5 C -0.519 4.519 6 H 0.061 0.939 7 C 0.001 3.999 8 N -0.936 5.936 9 Si 0.966 3.034 10 H -0.275 1.275 11 H -0.282 1.282 12 H -0.264 1.264 13 C 0.056 3.944 14 C -0.092 4.092 15 C 0.094 3.906 16 H 0.027 0.973 17 C -0.112 4.112 18 C -0.121 4.121 19 C -0.112 4.112 20 C 0.053 3.947 21 N -0.545 5.545 22 C 0.022 3.978 23 H 0.072 0.928 24 H 0.032 0.968 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.082 0.918 28 H -0.007 1.007 29 H -0.023 1.023 30 H 0.263 0.737 31 H 0.037 0.963 32 H 0.045 0.955 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.055 0.945 39 H 0.068 0.932 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.027 0.973 43 H 0.067 0.933 44 H 0.081 0.919 45 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.279 -2.930 -20.033 20.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.067 4.067 3 N -0.268 5.268 4 C 0.079 3.921 5 C -0.557 4.557 6 H 0.079 0.921 7 C -0.196 4.196 8 N -0.577 5.577 9 Si 0.791 3.209 10 H -0.200 1.200 11 H -0.208 1.208 12 H -0.188 1.188 13 C -0.073 4.073 14 C -0.131 4.131 15 C -0.015 4.015 16 H 0.045 0.955 17 C -0.150 4.150 18 C -0.159 4.159 19 C -0.150 4.150 20 C -0.075 4.075 21 N -0.270 5.270 22 C -0.126 4.126 23 H 0.091 0.909 24 H 0.051 0.949 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.100 0.900 28 H 0.011 0.989 29 H -0.005 1.005 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.101 0.899 41 H 0.105 0.895 42 H 0.045 0.955 43 H 0.086 0.914 44 H 0.100 0.900 45 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 0.627 -3.323 -19.975 20.259 hybrid contribution -0.440 1.060 1.398 1.809 sum 0.187 -2.263 -18.577 18.715 Atomic orbital electron populations 1.22260 0.98504 1.02165 1.00792 1.21991 0.92914 0.90236 1.01509 1.62204 1.59790 1.02856 1.01971 1.19404 0.92727 0.92349 0.87653 1.21468 1.26510 1.16200 0.91530 0.92119 1.25879 0.95862 0.95531 1.02363 1.70087 1.37120 1.26022 1.24425 0.85425 0.78158 0.79109 0.78189 1.20016 1.20800 1.18814 1.22104 0.97586 0.97164 0.90402 1.21504 0.99867 1.00202 0.91485 1.21510 0.94170 0.95856 0.89963 0.95508 1.21654 0.93941 1.01391 0.97996 1.21600 1.00071 0.99549 0.94661 1.21574 0.93266 1.02121 0.98028 1.22190 0.97733 0.95643 0.91923 1.61953 1.04698 1.57204 1.03133 1.22427 0.87964 0.99663 1.02528 0.90943 0.94926 0.92291 0.92431 0.90011 0.98869 1.00518 0.92814 0.94454 0.93629 0.91960 0.91222 0.91313 0.92184 0.90766 0.92615 0.91295 0.89911 0.89521 0.95518 0.91389 0.90024 0.96210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.42 9.27 71.98 0.67 -5.75 16 2 C 0.06 2.38 5.72 86.30 0.49 2.87 16 3 N -0.54 -23.93 4.67 -900.79 -4.21 -28.13 16 4 C 0.20 11.12 4.49 85.55 0.38 11.50 16 5 C -0.52 -29.89 8.50 25.60 0.22 -29.67 16 6 H 0.06 3.44 7.11 -2.91 -0.02 3.42 16 7 C 0.00 0.07 5.46 84.66 0.46 0.54 16 8 N -0.94 -57.14 13.29 21.45 0.28 -56.85 16 9 Si 0.97 44.95 29.54 68.60 2.03 46.97 16 10 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 12 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 13 C 0.06 2.05 4.56 86.30 0.39 2.44 16 14 C -0.09 -2.74 4.42 30.60 0.14 -2.61 16 15 C 0.09 2.39 1.91 44.94 0.09 2.47 16 16 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 17 C -0.11 -2.59 5.08 30.64 0.16 -2.43 16 18 C -0.12 -2.26 6.00 30.67 0.18 -2.07 16 19 C -0.11 -1.83 6.09 30.65 0.19 -1.64 16 20 C 0.05 0.96 5.46 86.33 0.47 1.43 16 21 N -0.55 -12.29 4.75 -897.17 -4.26 -16.55 16 22 C 0.02 0.46 8.88 127.69 1.13 1.60 16 23 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 24 H 0.03 1.40 6.22 -2.39 -0.01 1.38 16 25 H 0.06 1.93 6.34 -2.39 -0.02 1.91 16 26 H 0.06 2.45 6.83 -2.39 -0.02 2.44 16 27 H 0.08 2.69 6.52 -2.39 -0.02 2.68 16 28 H -0.01 -0.41 7.88 -2.39 -0.02 -0.42 16 29 H -0.02 -1.31 6.00 -2.39 -0.01 -1.33 16 30 H 0.26 15.11 8.31 -92.70 -0.77 14.34 16 31 H 0.04 1.32 4.35 -2.39 -0.01 1.31 16 32 H 0.05 1.78 7.84 -2.39 -0.02 1.76 16 33 H 0.06 1.94 6.25 -2.39 -0.01 1.93 16 34 H 0.07 2.05 6.63 -2.39 -0.02 2.03 16 35 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.06 1.49 6.56 -2.38 -0.02 1.48 16 37 H 0.07 1.21 8.14 -2.38 -0.02 1.20 16 38 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 39 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.09 1.33 8.01 -2.38 -0.02 1.31 16 42 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 43 H 0.07 1.54 6.54 -2.38 -0.02 1.52 16 44 H 0.08 1.38 7.97 -2.38 -0.02 1.36 16 45 H 0.02 0.43 8.12 -2.39 -0.02 0.41 16 Total: -1.00 -63.60 332.02 -0.25 -63.85 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: 0.93 Total: 12.02 kcal Atomic # 6 Polarization: -26.29 SS G_CDS: 4.97 Total: -21.32 kcal Atomic # 7 Polarization: -93.35 SS G_CDS: -8.18 Total: -101.53 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Total: -63.60 -0.25 -63.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230202589.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.461 kcal (2) G-P(sol) polarization free energy of solvation -63.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds