Wall clock time and date at job start Sun Mar 29 2020 23:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46904 * 109.46880 * 2 1 4 4 C 1.48071 * 110.99528 * 62.40469 * 3 2 1 5 5 C 1.50792 * 112.87824 * 84.34417 * 4 3 2 6 6 C 1.54523 * 108.92639 * 92.73290 * 5 4 3 7 7 N 1.40085 * 111.44886 * 283.90398 * 6 5 4 8 8 C 1.46897 * 110.99837 * 188.18136 * 7 6 5 9 9 C 1.53004 * 109.47041 * 66.04804 * 8 7 6 10 10 C 1.52996 * 109.46662 * 179.97438 * 9 8 7 11 11 C 1.50700 * 109.46807 * 179.97438 * 10 9 8 12 12 H 1.07997 * 120.00459 * 359.97438 * 11 10 9 13 13 C 1.37878 * 120.00085 * 179.97438 * 11 10 9 14 14 N 1.31519 * 120.00089 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00226 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46956 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47068 * 119.99946 * 15 13 11 18 18 H 1.48501 * 109.47158 * 239.99956 * 15 13 11 19 19 C 1.47680 * 114.57328 * 61.48117 * 7 6 5 20 20 H 1.09001 * 109.74379 * 38.32402 * 19 7 6 21 21 C 1.53001 * 109.73681 * 158.97962 * 19 7 6 22 22 C 1.47743 * 111.00056 * 189.99971 * 3 2 1 23 23 H 1.08998 * 109.47253 * 299.99484 * 1 2 3 24 24 H 1.08999 * 109.47093 * 59.99810 * 1 2 3 25 25 H 1.09001 * 109.46949 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46901 * 240.00769 * 2 1 3 27 27 H 1.08999 * 109.47093 * 120.00190 * 2 1 3 28 28 H 1.09003 * 108.78736 * 205.23942 * 4 3 2 29 29 H 1.09001 * 108.79377 * 323.56912 * 4 3 2 30 30 H 1.08999 * 109.62341 * 332.87020 * 5 4 3 31 31 H 1.08997 * 109.52063 * 212.53152 * 5 4 3 32 32 H 1.09002 * 109.07452 * 163.41616 * 6 5 4 33 33 H 1.08995 * 109.07262 * 44.38936 * 6 5 4 34 34 H 1.09002 * 109.47005 * 186.04636 * 8 7 6 35 35 H 1.09001 * 109.47171 * 306.04699 * 8 7 6 36 36 H 1.08998 * 109.46614 * 299.99879 * 9 8 7 37 37 H 1.09001 * 109.47224 * 59.99928 * 9 8 7 38 38 H 1.08998 * 109.47572 * 299.99371 * 10 9 8 39 39 H 1.09001 * 109.47750 * 59.99770 * 10 9 8 40 40 H 0.97001 * 119.99750 * 179.97438 * 14 13 11 41 41 H 1.09003 * 109.47576 * 60.00230 * 21 19 7 42 42 H 1.09001 * 109.47208 * 179.97438 * 21 19 7 43 43 H 1.08997 * 109.47154 * 299.99791 * 21 19 7 44 44 H 1.09000 * 108.99159 * 72.19000 * 22 3 2 45 45 H 1.09005 * 108.93024 * 313.40202 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5927 2.0987 1.2251 5 6 2.5149 1.8599 2.3941 6 6 3.5813 2.9777 2.4277 7 7 4.5613 2.7804 1.4464 8 6 5.6685 3.7318 1.6095 9 6 6.4022 3.4407 2.9202 10 6 7.5558 4.4313 3.0897 11 6 8.2781 4.1450 4.3809 12 1 7.9471 3.3376 5.0173 13 6 9.3614 4.9138 4.7500 14 7 9.7649 5.8968 3.9749 15 14 10.2563 4.5594 6.3510 16 1 9.6107 3.4102 7.0350 17 1 11.6752 4.2296 6.0625 18 1 10.1947 5.7563 7.2279 19 6 4.0531 2.7923 0.0598 20 1 3.2770 3.5510 -0.0414 21 6 5.1992 3.0934 -0.9080 22 6 3.4768 1.4315 -0.2395 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5137 -0.8901 27 1 1.8934 -0.5139 0.8900 28 1 1.5604 3.1678 1.0154 29 1 0.5912 1.7640 1.4955 30 1 3.0040 0.8922 2.2828 31 1 1.9405 1.8757 3.3203 32 1 4.0564 2.9873 3.4087 33 1 3.0955 3.9385 2.2579 34 1 6.3617 3.6291 0.7745 35 1 5.2743 4.7478 1.6316 36 1 5.7090 3.5434 3.7550 37 1 6.7964 2.4247 2.8981 38 1 8.2489 4.3282 2.2548 39 1 7.1621 5.4474 3.1116 40 1 10.5268 6.4379 4.2348 41 1 5.9672 2.3259 -0.8117 42 1 4.8196 3.1007 -1.9297 43 1 5.6275 4.0676 -0.6722 44 1 3.6728 1.1849 -1.2830 45 1 3.9635 0.6923 0.3968 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000320301218.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:14:56 Heat of formation + Delta-G solvation = 3.739585 kcal Electronic energy + Delta-G solvation = -19811.223217 eV Core-core repulsion = 17056.459595 eV Total energy + Delta-G solvation = -2754.763622 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.00902 -36.89269 -33.87759 -33.34185 -32.12858 -30.62340 -28.76251 -27.23250 -25.42404 -24.67446 -22.72875 -22.26963 -20.33384 -19.56260 -19.40242 -16.45610 -16.29190 -15.94218 -15.77499 -15.00139 -14.71972 -14.36015 -13.94100 -13.36128 -13.30132 -12.87696 -12.67300 -12.54226 -12.35132 -12.14904 -11.99429 -11.63759 -11.44879 -11.43670 -11.23898 -11.03656 -10.88750 -10.77122 -10.64973 -10.49714 -10.30542 -10.22385 -9.50624 -9.29498 -9.01068 -8.32349 -8.25068 -7.87908 -5.97629 -3.99387 3.32349 3.39682 3.44260 3.77309 4.13441 4.48890 4.73490 4.80863 5.02299 5.03764 5.15038 5.18993 5.26392 5.32171 5.38251 5.39609 5.54864 5.59677 5.70627 5.74776 5.78726 5.80948 5.85930 5.90143 5.95710 5.99378 6.02552 6.11672 6.22979 6.28742 6.33326 6.40745 6.76283 6.83983 7.02381 7.04779 7.19208 7.48892 7.71346 7.73819 7.87634 8.03311 8.47014 9.08115 9.64515 11.13853 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.039696 B = 0.003878 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.199772 B = 7218.636442 C = 7616.792205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.052 3.948 3 N -0.548 5.548 4 C 0.050 3.950 5 C -0.149 4.149 6 C 0.071 3.929 7 N -0.553 5.553 8 C 0.052 3.948 9 C -0.106 4.106 10 C 0.022 3.978 11 C -0.517 4.517 12 H 0.055 0.945 13 C 0.055 3.945 14 N -0.896 5.896 15 Si 0.891 3.109 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C 0.088 3.912 20 H 0.051 0.949 21 C -0.152 4.152 22 C 0.067 3.933 23 H 0.056 0.944 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.071 0.929 27 H 0.032 0.968 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.016 0.984 34 H 0.081 0.919 35 H 0.027 0.973 36 H 0.045 0.955 37 H 0.054 0.946 38 H 0.015 0.985 39 H 0.013 0.987 40 H 0.259 0.741 41 H 0.066 0.934 42 H 0.058 0.942 43 H 0.066 0.934 44 H 0.073 0.927 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.916 -9.225 -9.076 21.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.076 4.076 3 N -0.273 5.273 4 C -0.078 4.078 5 C -0.188 4.188 6 C -0.058 4.058 7 N -0.278 5.278 8 C -0.074 4.074 9 C -0.144 4.144 10 C -0.016 4.016 11 C -0.555 4.555 12 H 0.073 0.927 13 C -0.146 4.146 14 N -0.536 5.536 15 Si 0.719 3.281 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.211 1.211 19 C -0.020 4.020 20 H 0.069 0.931 21 C -0.209 4.209 22 C -0.061 4.061 23 H 0.074 0.926 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.089 0.911 27 H 0.050 0.950 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.034 0.966 34 H 0.100 0.900 35 H 0.045 0.955 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.034 0.966 39 H 0.031 0.969 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.085 0.915 44 H 0.091 0.909 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -16.845 -9.295 -9.398 21.412 hybrid contribution 0.633 0.277 1.510 1.661 sum -16.213 -9.017 -7.888 20.159 Atomic orbital electron populations 1.21858 0.95185 1.01301 1.02369 1.22001 0.95669 0.89366 1.00548 1.62255 1.13936 1.14760 1.36388 1.22078 0.98293 0.99364 0.88031 1.22064 0.97614 1.00212 0.98908 1.21070 0.92477 0.95444 0.96835 1.59149 1.11702 1.54622 1.02293 1.22457 0.92057 0.92054 1.00820 1.21693 0.98003 1.00951 0.93712 1.19068 0.91976 0.93700 0.96810 1.21295 1.13096 1.15417 1.05706 0.92695 1.25032 0.97277 0.95193 0.97052 1.69979 1.26535 1.19746 1.37358 0.86555 0.79619 0.78156 0.83786 1.19747 1.21027 1.21062 1.21289 0.96106 0.96329 0.88270 0.93083 1.22046 0.98274 1.02690 0.97927 1.21945 0.86014 0.97454 1.00675 0.92559 0.92000 0.92515 0.91096 0.94995 0.91326 0.91093 0.91072 0.91216 0.90069 0.96555 0.90028 0.95515 0.93634 0.92765 0.96625 0.96884 0.93121 0.91543 0.92264 0.91487 0.90900 0.93213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.82 37.16 0.37 -0.84 16 2 C 0.05 0.50 5.59 -3.82 -0.02 0.48 16 3 N -0.55 -6.16 4.76 -235.64 -1.12 -7.28 16 4 C 0.05 0.55 5.00 -4.29 -0.02 0.53 16 5 C -0.15 -1.78 5.62 -27.04 -0.15 -1.93 16 6 C 0.07 1.03 4.84 -6.55 -0.03 1.00 16 7 N -0.55 -8.42 3.96 -231.68 -0.92 -9.34 16 8 C 0.05 0.92 4.20 -3.82 -0.02 0.91 16 9 C -0.11 -2.24 5.05 -26.73 -0.14 -2.37 16 10 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 11 C -0.52 -14.89 9.11 -34.44 -0.31 -15.21 16 12 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -27.27 13.29 55.43 0.74 -26.53 16 15 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 16 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 19 C 0.09 1.15 2.47 -68.40 -0.17 0.98 16 20 H 0.05 0.71 6.77 -51.93 -0.35 0.36 16 21 C -0.15 -1.85 7.71 37.16 0.29 -1.57 16 22 C 0.07 0.80 4.64 -4.47 -0.02 0.78 16 23 H 0.06 0.45 6.07 -51.93 -0.32 0.14 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 27 H 0.03 0.32 7.65 -51.93 -0.40 -0.08 16 28 H 0.07 0.82 6.52 -51.93 -0.34 0.48 16 29 H 0.07 0.69 5.59 -51.93 -0.29 0.40 16 30 H 0.07 0.93 6.66 -51.93 -0.35 0.59 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.08 1.29 5.94 -51.93 -0.31 0.98 16 33 H 0.02 0.24 7.59 -51.93 -0.39 -0.15 16 34 H 0.08 1.41 5.34 -51.93 -0.28 1.14 16 35 H 0.03 0.48 8.11 -51.93 -0.42 0.06 16 36 H 0.05 0.96 6.36 -51.93 -0.33 0.63 16 37 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.07 0.83 8.01 -51.93 -0.42 0.42 16 42 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 43 H 0.07 0.87 6.34 -51.93 -0.33 0.54 16 44 H 0.07 0.80 7.71 -51.93 -0.40 0.40 16 45 H 0.05 0.66 7.07 -51.93 -0.37 0.30 16 LS Contribution 330.17 15.07 4.98 4.98 Total: -1.00 -29.85 330.17 -10.01 -39.87 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -8.20 Total: -3.32 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: -0.47 Total: -15.29 kcal Atomic # 7 Polarization: -41.84 SS G_CDS: -1.30 Total: -43.15 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.85 -10.01 -39.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000320301218.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.607 kcal (2) G-P(sol) polarization free energy of solvation -29.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds